{"id":"https://openalex.org/W4403646525","doi":"https://doi.org/10.1021/acs.jcim.4c01398","title":"CosolvKit: a Versatile Tool for Cosolvent MD Preparation and Analysis","display_name":"CosolvKit: a Versatile Tool for Cosolvent MD Preparation and Analysis","publication_year":2024,"publication_date":"2024-10-22","ids":{"openalex":"https://openalex.org/W4403646525","doi":"https://doi.org/10.1021/acs.jcim.4c01398","pmid":"https://pubmed.ncbi.nlm.nih.gov/39436011"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01398","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01398","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12810578/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018181593","display_name":"Niccol\u00f2 Bruciaferri","orcid":"https://orcid.org/0000-0003-0223-3214"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Niccolo\u2019 Bruciaferri","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090448722","display_name":"J\u00e9r\u00f4me Eberhardt","orcid":"https://orcid.org/0000-0002-2974-7541"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH","US"],"is_corresponding":false,"raw_author_name":"Jerome Eberhardt","raw_affiliation_strings":["Biozentrum, University of Basel, Spitalstrasse 41, Basel 4056, Switzerland","Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Spitalstrasse 41, Basel 4056, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087897560","display_name":"Manuel A. Llanos","orcid":"https://orcid.org/0000-0002-9120-4951"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manuel A. Llanos","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":"https://orcid.org/0000-0002-9120-4951","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108319874","display_name":"Johannes R. Loeffler","orcid":null},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johannes R. Loeffler","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088974803","display_name":"Matthew Holcomb","orcid":"https://orcid.org/0000-0002-8409-4344"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Holcomb","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":"https://orcid.org/0000-0002-8409-4344","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034034027","display_name":"Monica L. Fern\u00e1ndez\u2010Quintero","orcid":"https://orcid.org/0000-0002-6811-6283"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica L. Fernandez-Quintero","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":"https://orcid.org/0000-0002-6811-6283","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072196443","display_name":"Diogo Santos\u2010Martins","orcid":"https://orcid.org/0000-0003-4622-3747"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Diogo Santos-Martins","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":"https://orcid.org/0000-0003-4622-3747","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067790213","display_name":"Andrew B. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew B. Ward","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068867875","display_name":"Stefano Forli","orcid":"https://orcid.org/0000-0002-5964-7111"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stefano Forli","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States"],"raw_orcid":"https://orcid.org/0000-0002-5964-7111","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, California 92037, United States","institution_ids":["https://openalex.org/I150209017"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5068867875"],"corresponding_institution_ids":["https://openalex.org/I150209017"],"apc_list":null,"apc_paid":null,"fwci":1.8139,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.88234176,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"64","issue":"21","first_page":"8227","last_page":"8235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11903","display_name":"Private Equity and Venture Capital","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/1402","display_name":"Accounting"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11903","display_name":"Private Equity and Venture Capital","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/1402","display_name":"Accounting"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43260452151298523},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.41442248225212097}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43260452151298523},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.41442248225212097}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.4c01398","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01398","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39436011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39436011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12810578","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12810578/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12810578","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12810578/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1046346996","display_name":null,"funder_award_id":"R24-GM145962","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5662654025","display_name":null,"funder_award_id":"R01-GM069832","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1973296424","https://openalex.org/W1985469117","https://openalex.org/W1991072488","https://openalex.org/W2019048640","https://openalex.org/W2025699090","https://openalex.org/W2035687084","https://openalex.org/W2039588355","https://openalex.org/W2041526132","https://openalex.org/W2044973463","https://openalex.org/W2057806291","https://openalex.org/W2100561975","https://openalex.org/W2107361996","https://openalex.org/W2111012458","https://openalex.org/W2118233996","https://openalex.org/W2132262459","https://openalex.org/W2140831051","https://openalex.org/W2147993766","https://openalex.org/W2164088236","https://openalex.org/W2333149052","https://openalex.org/W2404280981","https://openalex.org/W2410463796","https://openalex.org/W2485938665","https://openalex.org/W2530847795","https://openalex.org/W2618686671","https://openalex.org/W2803311943","https://openalex.org/W2804171113","https://openalex.org/W2808015727","https://openalex.org/W2898389621","https://openalex.org/W2940255832","https://openalex.org/W2945999173","https://openalex.org/W2970011539","https://openalex.org/W2995119220","https://openalex.org/W3009690250","https://openalex.org/W3046156454","https://openalex.org/W3046383151","https://openalex.org/W3154455195","https://openalex.org/W3164365109","https://openalex.org/W3164917922","https://openalex.org/W3209777115","https://openalex.org/W4230386739","https://openalex.org/W4255584963","https://openalex.org/W4295096853","https://openalex.org/W4322732093","https://openalex.org/W4376226284","https://openalex.org/W4388870365","https://openalex.org/W4389627623"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"Cosolvent":[0],"molecular":[1],"dynamics":[2],"(MDs)":[3],"are":[4,15],"an":[5],"increasingly":[6],"popular":[7],"form":[8],"of":[9,41,52,76,91,107,110,122,142,150,162],"simulations":[10,22,85],"where":[11],"small":[12],"molecule":[13],"cosolvents":[14,59,93,112],"added":[16],"to":[17,45,57,64,133,139],"water-solvated":[18],"protein":[19,47],"systems.":[20],"These":[21],"can":[23],"perform":[24],"diverse":[25,66],"target":[26],"characterization":[27],"tasks,":[28],"including":[29],"cryptic":[30],"and":[31,35,38,67,94,105,113,136],"allosteric":[32],"pocket":[33],"identification":[34],"pharmacophore":[36],"profiling":[37],"supplement":[39],"suites":[40],"enhanced":[42],"sampling":[43],"methods":[44,81],"explore":[46],"conformational":[48],"landscapes.":[49],"The":[50],"behavior":[51],"these":[53,163],"systems":[54,108],"is":[55,70,117],"tied":[56],"the":[58,62,74,77,103,120,148,155,160],"used,":[60],"so":[61],"ability":[63],"define":[65],"complex":[68],"mixtures":[69],"critical":[71],"in":[72],"dictating":[73],"outcome":[75],"simulations.":[78,164],"However,":[79],"existing":[80],"for":[82,102,124,159],"preparing":[83],"cosolvent":[84],"only":[86],"support":[87],"a":[88,100,140],"limited":[89],"number":[90],"predefined":[92],"concentrations.":[95,114],"Here,":[96],"we":[97],"present":[98],"CosolvKit,":[99],"tool":[101,116],"preparation":[104],"analysis":[106],"composed":[109],"user-defined":[111],"This":[115],"modular,":[118],"supporting":[119],"creation":[121],"files":[123],"multiple":[125],"MD":[126],"engines,":[127],"as":[128,130],"well":[129],"direct":[131],"access":[132,138],"OpenMM":[134],"simulations,":[135],"offering":[137],"variety":[141],"generalizable":[143],"small-molecule":[144],"force":[145],"fields.":[146],"To":[147],"best":[149],"our":[151],"knowledge,":[152],"CosolvKit":[153],"represents":[154],"first":[156],"generalized":[157],"approach":[158],"construction":[161]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
