{"id":"https://openalex.org/W4409001922","doi":"https://doi.org/10.1021/acs.jcim.4c01335","title":"Drug-Target Affinity Prediction Based on Topological Enhanced Graph Neural Networks","display_name":"Drug-Target Affinity Prediction Based on Topological Enhanced Graph Neural Networks","publication_year":2025,"publication_date":"2025-03-31","ids":{"openalex":"https://openalex.org/W4409001922","doi":"https://doi.org/10.1021/acs.jcim.4c01335","pmid":"https://pubmed.ncbi.nlm.nih.gov/40159647"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01335","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01335","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056815618","display_name":"Hengliang Guo","orcid":"https://orcid.org/0000-0001-5796-233X"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hengliang Guo","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0000-0001-5796-233X","affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034633626","display_name":"Congxiang Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Congxiang Zhang","raw_affiliation_strings":["School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0009-0002-7473-6355","affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022800604","display_name":"Jiandong Shang","orcid":"https://orcid.org/0009-0001-7673-2641"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiandong Shang","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068068809","display_name":"Dujuan Zhang","orcid":"https://orcid.org/0009-0004-2733-3064"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dujuan Zhang","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100591627","display_name":"Yang Guo","orcid":"https://orcid.org/0009-0003-3517-2005"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Guo","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020174469","display_name":"Kang Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kang Gao","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061398124","display_name":"Kecheng Yang","orcid":"https://orcid.org/0000-0001-9664-1395"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kecheng Yang","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0000-0001-9664-1395","affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101587625","display_name":"Xu Gao","orcid":"https://orcid.org/0009-0003-7817-6786"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Gao","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018644308","display_name":"Dezhong Yao","orcid":"https://orcid.org/0000-0003-0336-0522"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dezhong Yao","raw_affiliation_strings":["Huazhong University of Science and Technology","National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","School of Computer and Technology","Zhengzhou University","School of Computer and Technology, Huazhong University of Science and Technology, Wuhan 420100, China","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong University of Science and Technology","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer and Technology","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Technology, Huazhong University of Science and Technology, Wuhan 420100, China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069344375","display_name":"Wanting Chen","orcid":"https://orcid.org/0009-0001-8487-4068"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanting Chen","raw_affiliation_strings":["School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114038545","display_name":"Mengfan Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengfan Yan","raw_affiliation_strings":["School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101846482","display_name":"Gang Wu","orcid":"https://orcid.org/0000-0002-6615-0699"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210158984","display_name":"National Supercomputing Center in Wuxi","ror":"https://ror.org/04ypjrs34","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210158984"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Gang Wu","raw_affiliation_strings":["National Supercomputing Center in Zhengzhou","School of Computer and Artificial Intelligence","Zhengzhou University","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0000-0002-6615-0699","affiliations":[{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou","institution_ids":["https://openalex.org/I4210158984"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Zhengzhou University","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I38877650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101846482"],"corresponding_institution_ids":["https://openalex.org/I38877650","https://openalex.org/I4210158984"],"apc_list":null,"apc_paid":null,"fwci":3.0486,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.91411664,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"65","issue":"7","first_page":"3749","last_page":"3760"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.8019026517868042},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7395344972610474},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5812097787857056},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5113944411277771},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4649447500705719},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4640141725540161},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42440569400787354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41515910625457764},{"id":"https://openalex.org/keywords/power-graph-analysis","display_name":"Power graph analysis","score":0.4150477349758148},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3653299808502197},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.30947232246398926}],"concepts":[{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.8019026517868042},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7395344972610474},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5812097787857056},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5113944411277771},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4649447500705719},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4640141725540161},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42440569400787354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41515910625457764},{"id":"https://openalex.org/C106937863","wikidata":"https://www.wikidata.org/wiki/Q7236518","display_name":"Power graph analysis","level":3,"score":0.4150477349758148},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3653299808502197},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.30947232246398926},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c01335","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01335","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40159647","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40159647","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6050715050","display_name":null,"funder_award_id":"232300421118","funder_id":"https://openalex.org/F4320323845","funder_display_name":"Natural Science Foundation of Henan Province"}],"funders":[{"id":"https://openalex.org/F4320323845","display_name":"Natural Science Foundation of Henan Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W317957491","https://openalex.org/W1972987731","https://openalex.org/W1986049988","https://openalex.org/W2035585923","https://openalex.org/W2039280129","https://openalex.org/W2049266248","https://openalex.org/W2074631079","https://openalex.org/W2086286404","https://openalex.org/W2096864392","https://openalex.org/W2109991441","https://openalex.org/W2147580225","https://openalex.org/W2605952223","https://openalex.org/W2785947426","https://openalex.org/W2906084236","https://openalex.org/W2916534270","https://openalex.org/W2936616646","https://openalex.org/W2956081200","https://openalex.org/W2989848927","https://openalex.org/W3000369508","https://openalex.org/W3004604833","https://openalex.org/W3018980093","https://openalex.org/W3032123378","https://openalex.org/W3153418506","https://openalex.org/W3175599101","https://openalex.org/W3191666000","https://openalex.org/W3194218357","https://openalex.org/W4200547951","https://openalex.org/W4205167309","https://openalex.org/W4210702584","https://openalex.org/W4220853970","https://openalex.org/W4224326917","https://openalex.org/W4283259285","https://openalex.org/W4285041843","https://openalex.org/W4295298624","https://openalex.org/W4296890795","https://openalex.org/W4300717171","https://openalex.org/W4318391592","https://openalex.org/W4319999782","https://openalex.org/W4321004126","https://openalex.org/W4361985865","https://openalex.org/W4362459640","https://openalex.org/W4366991255","https://openalex.org/W4367042263","https://openalex.org/W4375863032","https://openalex.org/W4376131123","https://openalex.org/W4377968189","https://openalex.org/W4378782647","https://openalex.org/W4380786758","https://openalex.org/W4382632004","https://openalex.org/W4383874146","https://openalex.org/W4386525718","https://openalex.org/W4386703040","https://openalex.org/W4386898749","https://openalex.org/W4388196326","https://openalex.org/W4388838206","https://openalex.org/W4390659208","https://openalex.org/W4390883205","https://openalex.org/W4392693790","https://openalex.org/W4393255958","https://openalex.org/W4399356619"],"related_works":["https://openalex.org/W2787993192","https://openalex.org/W2158269427","https://openalex.org/W4381280689","https://openalex.org/W2847365777","https://openalex.org/W3128025644","https://openalex.org/W4368755543","https://openalex.org/W3088104186","https://openalex.org/W1543023114","https://openalex.org/W4245709619","https://openalex.org/W85088162"],"abstract_inverted_index":{"Graph":[0],"neural":[1],"networks":[2],"(GNNs)":[3],"have":[4],"achieved":[5],"remarkable":[6],"success":[7],"in":[8],"drug-target":[9],"affinity":[10],"(DTA)":[11],"analysis,":[12],"reducing":[13],"the":[14,88,99,110],"cost":[15],"of":[16,56],"drug":[17,34],"development.":[18],"Unlike":[19],"traditional":[20],"one-dimensional":[21],"(1D)":[22],"sequence-based":[23],"methods,":[24],"GNNs":[25],"leverage":[26],"graph":[27],"structures":[28],"to":[29,37,47,86,108],"capture":[30,109],"richer":[31],"protein":[32,50,57,76],"and":[33,83,101,115],"features,":[35],"leading":[36],"improved":[38],"DTA":[39,72],"prediction":[40,73],"performance.":[41],"However,":[42],"existing":[43],"methods":[44],"often":[45],"neglect":[46],"incorporate":[48],"valuable":[49],"cavity":[51],"information,":[52],"a":[53,67],"key":[54],"aspect":[55],"physical":[58],"chemistry.":[59],"This":[60],"study":[61],"addresses":[62],"this":[63],"gap":[64],"by":[65],"proposing":[66],"novel":[68],"topology-enhanced":[69],"GNN":[70],"for":[71],"that":[74],"integrates":[75],"pocket":[77],"data.":[78],"Additionally,":[79],"we":[80],"optimize":[81],"training":[82],"message-passing":[84],"strategies":[85],"enhance":[87],"model's":[89,94],"feature":[90],"representation":[91],"capabilities.":[92],"Our":[93],"effectiveness":[95],"is":[96,120],"validated":[97],"on":[98,123],"Davis":[100],"KIBA":[102],"data":[103],"sets,":[104],"demonstrating":[105],"its":[106],"ability":[107],"intricate":[111],"interplay":[112],"between":[113],"drugs":[114],"targets.":[116],"The":[117],"source":[118],"code":[119],"publicly":[121],"available":[122],"https://github.com/ZZDXgangwu/DTA.":[124]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
