{"id":"https://openalex.org/W4401461669","doi":"https://doi.org/10.1021/acs.jcim.4c01153","title":"RLpMIEC: High-Affinity Peptide Generation Targeting Major Histocompatibility Complex-I Guided and Interpreted by Interaction Spectrum-Navigated Reinforcement Learning","display_name":"RLpMIEC: High-Affinity Peptide Generation Targeting Major Histocompatibility Complex-I Guided and Interpreted by Interaction Spectrum-Navigated Reinforcement Learning","publication_year":2024,"publication_date":"2024-08-09","ids":{"openalex":"https://openalex.org/W4401461669","doi":"https://doi.org/10.1021/acs.jcim.4c01153","pmid":"https://pubmed.ncbi.nlm.nih.gov/39118363"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01153","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1021/acs.jcim.4c01153","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113328134","display_name":"Qirui Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I161716053","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718","country_code":"CN","type":"education","lineage":["https://openalex.org/I161716053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qirui Deng","raw_affiliation_strings":["Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China"],"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China","institution_ids":["https://openalex.org/I161716053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407681","display_name":"Zhe Wang","orcid":"https://orcid.org/0000-0003-4102-1353"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Wang","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China","School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, P. R. China"],"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, P. R. China","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101268945","display_name":"Sutong Xiang","orcid":null},"institutions":[{"id":"https://openalex.org/I161716053","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718","country_code":"CN","type":"education","lineage":["https://openalex.org/I161716053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sutong Xiang","raw_affiliation_strings":["Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China"],"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China","institution_ids":["https://openalex.org/I161716053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432295","display_name":"Qinghua Wang","orcid":"https://orcid.org/0000-0002-8032-6291"},"institutions":[{"id":"https://openalex.org/I161716053","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718","country_code":"CN","type":"education","lineage":["https://openalex.org/I161716053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghua Wang","raw_affiliation_strings":["Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China"],"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China","institution_ids":["https://openalex.org/I161716053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032122232","display_name":"Yifei Liu","orcid":"https://orcid.org/0000-0002-5321-8172"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifei Liu","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China"],"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tingjun Hou","raw_affiliation_strings":["Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China"],"affiliations":[{"raw_affiliation_string":"Innovation Institute for Artificial Intelligence in Medicine of Zhejiang University, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058 Zhejiang, P. R. China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011434518","display_name":"Huiyong Sun","orcid":"https://orcid.org/0000-0002-7107-7481"},"institutions":[{"id":"https://openalex.org/I161716053","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718","country_code":"CN","type":"education","lineage":["https://openalex.org/I161716053"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huiyong Sun","raw_affiliation_strings":["Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China"],"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, China Pharmaceutical University, Nanjing 210009 Jiangsu, P. R. China","institution_ids":["https://openalex.org/I161716053"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5011434518","https://openalex.org/A5028525523"],"corresponding_institution_ids":["https://openalex.org/I161716053","https://openalex.org/I76130692"],"apc_list":null,"apc_paid":null,"fwci":0.2494,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5728839,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"64","issue":"16","first_page":"6432","last_page":"6449"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reinforcement-learning","display_name":"Reinforcement learning","score":0.5876468420028687},{"id":"https://openalex.org/keywords/reinforcement","display_name":"Reinforcement","score":0.5652973651885986},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5143214464187622},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4988834857940674},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44512224197387695},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.40170201659202576},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3484485149383545},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2795387804508209},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.24678605794906616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18531760573387146},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1581549048423767}],"concepts":[{"id":"https://openalex.org/C97541855","wikidata":"https://www.wikidata.org/wiki/Q830687","display_name":"Reinforcement learning","level":2,"score":0.5876468420028687},{"id":"https://openalex.org/C67203356","wikidata":"https://www.wikidata.org/wiki/Q1321905","display_name":"Reinforcement","level":2,"score":0.5652973651885986},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5143214464187622},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4988834857940674},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44512224197387695},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.40170201659202576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3484485149383545},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2795387804508209},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.24678605794906616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18531760573387146},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1581549048423767},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c01153","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1021/acs.jcim.4c01153","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39118363","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39118363","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2944339812","display_name":null,"funder_award_id":"1132010013","funder_id":"https://openalex.org/F4320321542","funder_display_name":"China Pharmaceutical University"},{"id":"https://openalex.org/G4005280399","display_name":null,"funder_award_id":"22303082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4012713274","display_name":null,"funder_award_id":"1131810011","funder_id":"https://openalex.org/F4320321542","funder_display_name":"China Pharmaceutical University"},{"id":"https://openalex.org/G7903508730","display_name":null,"funder_award_id":"22220102001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8503206293","display_name":null,"funder_award_id":"81603031","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321542","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":88,"referenced_works":["https://openalex.org/W1971302107","https://openalex.org/W1973983282","https://openalex.org/W1976499671","https://openalex.org/W1991461541","https://openalex.org/W2000305183","https://openalex.org/W2012523084","https://openalex.org/W2012540061","https://openalex.org/W2015688756","https://openalex.org/W2019711015","https://openalex.org/W2029993034","https://openalex.org/W2033048068","https://openalex.org/W2043056723","https://openalex.org/W2049553585","https://openalex.org/W2051599163","https://openalex.org/W2053931156","https://openalex.org/W2063580217","https://openalex.org/W2067174909","https://openalex.org/W2073621589","https://openalex.org/W2083685984","https://openalex.org/W2093381148","https://openalex.org/W2104885590","https://openalex.org/W2110574412","https://openalex.org/W2110694683","https://openalex.org/W2112752664","https://openalex.org/W2129386377","https://openalex.org/W2130479394","https://openalex.org/W2148146008","https://openalex.org/W2154509769","https://openalex.org/W2156669671","https://openalex.org/W2168688111","https://openalex.org/W2172170289","https://openalex.org/W2218629053","https://openalex.org/W2271914738","https://openalex.org/W2326870000","https://openalex.org/W2336411773","https://openalex.org/W2514929667","https://openalex.org/W2725466029","https://openalex.org/W2728365508","https://openalex.org/W2743893844","https://openalex.org/W2757986951","https://openalex.org/W2762980752","https://openalex.org/W2795499450","https://openalex.org/W2898389621","https://openalex.org/W2899127365","https://openalex.org/W2900213018","https://openalex.org/W2903912606","https://openalex.org/W2912067875","https://openalex.org/W2915949494","https://openalex.org/W2941612414","https://openalex.org/W2953065444","https://openalex.org/W2958431331","https://openalex.org/W2967717440","https://openalex.org/W2982086622","https://openalex.org/W2983176158","https://openalex.org/W2984164384","https://openalex.org/W2989052455","https://openalex.org/W3024570138","https://openalex.org/W3038053523","https://openalex.org/W3049184299","https://openalex.org/W3094686696","https://openalex.org/W3111171798","https://openalex.org/W3116865743","https://openalex.org/W3156232187","https://openalex.org/W3159295432","https://openalex.org/W3161700513","https://openalex.org/W3177828909","https://openalex.org/W3188721994","https://openalex.org/W3198942356","https://openalex.org/W3213287264","https://openalex.org/W4210421570","https://openalex.org/W4220655797","https://openalex.org/W4256407664","https://openalex.org/W4293567576","https://openalex.org/W4295242625","https://openalex.org/W4312195711","https://openalex.org/W4313492115","https://openalex.org/W4317869953","https://openalex.org/W4323320132","https://openalex.org/W4327810158","https://openalex.org/W4360999048","https://openalex.org/W4364351652","https://openalex.org/W4381432905","https://openalex.org/W4384820308","https://openalex.org/W4384934897","https://openalex.org/W4385693120","https://openalex.org/W4387701199","https://openalex.org/W4396813784","https://openalex.org/W4396932403"],"related_works":["https://openalex.org/W2920061524","https://openalex.org/W4310083477","https://openalex.org/W2328553770","https://openalex.org/W1977959518","https://openalex.org/W2038908348","https://openalex.org/W2107890255","https://openalex.org/W2106552856","https://openalex.org/W2145821588","https://openalex.org/W2086122291","https://openalex.org/W1987513656"],"abstract_inverted_index":{"Major":[0],"histocompatibility":[1],"complex":[2],"(MHC)":[3],"plays":[4],"a":[5,36,104],"vital":[6],"role":[7],"in":[8,79,162,188],"presenting":[9],"epitopes":[10,34,47],"(short":[11],"peptides":[12,142,171],"from":[13],"pathogenic":[14],"proteins)":[15],"to":[16,20,32,44,111,140,151],"T-cell":[17],"receptors":[18],"(TCRs)":[19],"trigger":[21],"the":[22,66,72,121,125,133,137,153,164],"subsequent":[23],"immune":[24],"responses.":[25],"Vaccine":[26],"design":[27,113],"targeting":[28,115],"MHC":[29,41],"generally":[30],"aims":[31],"find":[33,45],"with":[35,143,172,181],"high":[37,182],"binding":[38,145,174],"affinity":[39,146],"for":[40,190],"presentation.":[42],"Nevertheless,":[43],"novel":[46],"usually":[48],"requires":[49],"high-throughput":[50],"screening":[51],"of":[52,75,155],"bulk":[53],"peptide":[54,114,157],"database,":[55],"which":[56],"is":[57],"time-consuming,":[58],"labor-intensive,":[59],"more":[60],"unaffordable,":[61],"and":[62,93,97,136,147,168,176],"very":[63],"expensive.":[64],"Excitingly,":[65],"past":[67],"several":[68],"years":[69],"have":[70],"witnessed":[71],"great":[73],"success":[74],"artificial":[76],"intelligence":[77],"(AI)":[78],"various":[80],"fields,":[81],"such":[82],"as":[83],"natural":[84],"language":[85],"processing":[86],"(NLP,":[87],"e.g.,":[88],"GPT-4),":[89],"protein":[90],"structure":[91],"prediction":[92],"engineering":[94],"(e.g.,":[95],"AlphaFold2),":[96],"so":[98],"on.":[99],"Therefore,":[100],"herein,":[101],"we":[102],"propose":[103],"deep":[105],"reinforcement-learning":[106],"(RL)-based":[107],"generative":[108,165],"algorithm,":[109],"RLpMIEC,":[110],"quantitatively":[112],"MHC-I":[116],"systems.":[117],"Specifically,":[118],"RLpMIEC":[119,159],"combines":[120],"energetic":[122],"spectrum":[123],"(namely,":[124],"molecular":[126],"interaction":[127,135],"energy":[128],"component,":[129],"MIEC)":[130],"based":[131],"on":[132],"peptide-MHC":[134],"sequence":[138],"information":[139],"generate":[141,170],"strong":[144,173],"precise":[148,177],"MIEC":[149],"spectra":[150],"accelerate":[152],"discovery":[154],"candidate":[156],"vaccines.":[158],"performs":[160],"well":[161],"all":[163],"capability":[166,187],"evaluations":[167],"can":[169],"affinities":[175],"MIECs":[178],"and,":[179],"moreover,":[180],"interpretability,":[183],"demonstrating":[184],"its":[185],"powerful":[186],"participation":[189],"accelerating":[191],"peptide-based":[192],"vaccine":[193],"development.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2025-12-26T23:08:49.675405","created_date":"2025-10-10T00:00:00"}
