{"id":"https://openalex.org/W4401391156","doi":"https://doi.org/10.1021/acs.jcim.4c00689","title":"Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models","display_name":"Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models","publication_year":2024,"publication_date":"2024-08-07","ids":{"openalex":"https://openalex.org/W4401391156","doi":"https://doi.org/10.1021/acs.jcim.4c00689","pmid":"https://pubmed.ncbi.nlm.nih.gov/39110130"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00689","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00689","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101964468","display_name":"Yang Tan","orcid":"https://orcid.org/0009-0004-7261-1705"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":null,"type":"facility","lineage":["https://openalex.org/I4391012619"]},{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Tan","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4391012619"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044250758","display_name":"Mingchen Li","orcid":"https://orcid.org/0000-0001-6862-0052"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":null,"type":"facility","lineage":["https://openalex.org/I4391012619"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingchen Li","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4391012619"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027695625","display_name":"Bingxin Zhou","orcid":"https://orcid.org/0000-0002-3897-9766"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingxin Zhou","raw_affiliation_strings":["Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090728932","display_name":"Bozitao Zhong","orcid":"https://orcid.org/0000-0001-9363-6099"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bozitao Zhong","raw_affiliation_strings":["Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065268874","display_name":"Lirong Zheng","orcid":"https://orcid.org/0000-0001-6803-5048"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Lirong Zheng","raw_affiliation_strings":["Department of Cell and Developmental Biology & Michigan Neuroscience Institute, University of Michigan Medical School, Ann Arbor, Michigan 48104, United States","Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Developmental Biology & Michigan Neuroscience Institute, University of Michigan Medical School, Ann Arbor, Michigan 48104, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014735098","display_name":"Pan Tan","orcid":"https://orcid.org/0000-0003-2086-0940"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":null,"type":"facility","lineage":["https://openalex.org/I4391012619"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pan Tan","raw_affiliation_strings":["Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China"],"affiliations":[{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4391012619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062633180","display_name":"Ziyi Zhou","orcid":"https://orcid.org/0000-0003-1589-0598"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyi Zhou","raw_affiliation_strings":["Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058941949","display_name":"Huiqun Yu","orcid":"https://orcid.org/0000-0002-1899-1135"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huiqun Yu","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034901082","display_name":"Guisheng Fan","orcid":"https://orcid.org/0000-0002-2702-0242"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guisheng Fan","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai 200237, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009852060","display_name":"Liang Hong","orcid":"https://orcid.org/0000-0003-1101-7046"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4210111959","display_name":"Shanghai Advanced Research Institute","ror":"https://ror.org/02br7py06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210111959"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":null,"type":"facility","lineage":["https://openalex.org/I4391012619"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liang Hong","raw_affiliation_strings":["Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4391012619"]},{"raw_affiliation_string":"Shanghai National Center for Applied Mathematics (SJTU Center), Shanghai 200240, China","institution_ids":[]},{"raw_affiliation_string":"Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai 200240, China","institution_ids":["https://openalex.org/I4210111959","https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5009852060","https://openalex.org/A5034901082","https://openalex.org/A5058941949"],"corresponding_institution_ids":["https://openalex.org/I143593769","https://openalex.org/I183067930","https://openalex.org/I4210100255","https://openalex.org/I4210111959","https://openalex.org/I4391012619"],"apc_list":null,"apc_paid":null,"fwci":4.0144,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.94621178,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"64","issue":"16","first_page":"6338","last_page":"6349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adapter","display_name":"Adapter (computing)","score":0.9169617891311646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7783968448638916},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7563945055007935},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44885843992233276},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4338945746421814},{"id":"https://openalex.org/keywords/casp","display_name":"CASP","score":0.416523814201355},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40184205770492554},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.3132769763469696},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.1869925856590271},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11537110805511475},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.09349468350410461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08695882558822632}],"concepts":[{"id":"https://openalex.org/C177284502","wikidata":"https://www.wikidata.org/wiki/Q1005390","display_name":"Adapter (computing)","level":2,"score":0.9169617891311646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7783968448638916},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7563945055007935},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44885843992233276},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4338945746421814},{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.416523814201355},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40184205770492554},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.3132769763469696},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.1869925856590271},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11537110805511475},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.09349468350410461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08695882558822632},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c00689","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00689","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39110130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39110130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2914917180","display_name":null,"funder_award_id":"2019-01-07-00-02-E00076","funder_id":"https://openalex.org/F4320321881","funder_display_name":"Shanghai Municipal Education Commission"},{"id":"https://openalex.org/G4718777326","display_name":null,"funder_award_id":"12104295","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5201216583","display_name":null,"funder_award_id":"21X010200843","funder_id":"https://openalex.org/F4320322999","funder_display_name":"Shanghai Jiao Tong University"},{"id":"https://openalex.org/G5785647597","display_name":null,"funder_award_id":"11974239","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8948483455","display_name":null,"funder_award_id":"2021-GYHLW-01007","funder_id":"https://openalex.org/F4320329901","funder_display_name":"Shanghai Municipal People's Government"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321881","display_name":"Shanghai Municipal Education Commission","ror":"https://ror.org/05tewj457"},{"id":"https://openalex.org/F4320322999","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320329901","display_name":"Shanghai Municipal People's Government","ror":"https://ror.org/05xp2yp46"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1496604422","https://openalex.org/W1982023788","https://openalex.org/W2008708467","https://openalex.org/W2108862644","https://openalex.org/W2147863530","https://openalex.org/W2612690371","https://openalex.org/W2614053601","https://openalex.org/W2730472814","https://openalex.org/W2794004073","https://openalex.org/W2898364362","https://openalex.org/W2908510526","https://openalex.org/W3044145717","https://openalex.org/W3098365587","https://openalex.org/W3119438769","https://openalex.org/W3146944767","https://openalex.org/W3164046276","https://openalex.org/W3166142427","https://openalex.org/W3167479850","https://openalex.org/W3168867926","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3211795435","https://openalex.org/W3213545574","https://openalex.org/W3216325381","https://openalex.org/W4205939631","https://openalex.org/W4210984894","https://openalex.org/W4212774754","https://openalex.org/W4225264859","https://openalex.org/W4226239309","https://openalex.org/W4242765109","https://openalex.org/W4281478251","https://openalex.org/W4281790889","https://openalex.org/W4282024169","https://openalex.org/W4287208373","https://openalex.org/W4296032638","https://openalex.org/W4308834893","https://openalex.org/W4317853066","https://openalex.org/W4319078047","https://openalex.org/W4319983921","https://openalex.org/W4327550249","https://openalex.org/W4362663312","https://openalex.org/W4375858802","https://openalex.org/W4386496033","https://openalex.org/W4387303685","https://openalex.org/W4387966974","https://openalex.org/W4388399759","https://openalex.org/W4388979610","https://openalex.org/W4389174567","https://openalex.org/W4389279578","https://openalex.org/W4389767566","https://openalex.org/W4390970101","https://openalex.org/W4391335285","https://openalex.org/W4391590637","https://openalex.org/W4391710057","https://openalex.org/W4392302569","https://openalex.org/W4392885247","https://openalex.org/W4394892342","https://openalex.org/W4400231442"],"related_works":["https://openalex.org/W2411998238","https://openalex.org/W3198923619","https://openalex.org/W2093959518","https://openalex.org/W2334085108","https://openalex.org/W3199799076","https://openalex.org/W2561391236","https://openalex.org/W1599064615","https://openalex.org/W2147472674","https://openalex.org/W3199104097","https://openalex.org/W2155201844"],"abstract_inverted_index":{"Fine-tuning":[0],"pretrained":[1],"protein":[2],"language":[3,31],"models":[4],"(PLMs)":[5],"has":[6],"emerged":[7],"as":[8],"a":[9,24,70,151,166],"prominent":[10],"strategy":[11],"for":[12,77,198],"enhancing":[13,78],"downstream":[14,136,147],"prediction":[15],"tasks,":[16],"often":[17],"outperforming":[18],"traditional":[19],"supervised":[20],"learning":[21,81],"approaches.":[22],"As":[23],"widely":[25],"applied":[26],"powerful":[27],"technique":[28],"in":[29],"natural":[30],"processing,":[32],"employing":[33],"parameter-efficient":[34],"fine-tuning":[35],"techniques":[36],"could":[37],"potentially":[38],"enhance":[39],"the":[40,45,56,79,99,175],"performance":[41,149],"of":[42,82,119,153,158,168,173],"PLMs.":[43,83],"However,":[44],"direct":[46],"transfer":[47],"to":[48,55,92,142],"life":[49],"science":[50],"tasks":[51],"is":[52,102,178,188,200],"nontrivial":[53],"due":[54],"different":[57,105],"training":[58,176],"strategies":[59],"and":[60,73,108,129,155,170],"data":[61,132],"forms.":[62],"To":[63],"address":[64],"this":[65],"gap,":[66],"we":[67],"introduce":[68],"SES-Adapter,":[69],"simple,":[71],"efficient,":[72],"scalable":[74],"adapter":[75],"method":[76,101],"representation":[80],"SES-Adapter":[84,145,199],"incorporates":[85],"PLM":[86,106],"embeddings":[87,91],"with":[88,104,122,160,191],"structural":[89],"sequence":[90],"create":[93],"structure-aware":[94],"representations.":[95],"We":[96],"show":[97,139],"that":[98,140],"proposed":[100],"compatible":[103],"architectures":[107],"across":[109,134],"diverse":[110],"tasks.":[111,137],"Extensive":[112],"evaluations":[113],"are":[114],"conducted":[115],"on":[116],"2":[117,183],"types":[118],"folding":[120],"structures":[121],"notable":[123],"quality":[124],"differences,":[125],"9":[126,130],"state-of-the-art":[127],"baselines,":[128],"benchmark":[131],"sets":[133],"distinct":[135],"Results":[138],"compared":[141],"vanilla":[143],"PLMs,":[144],"improves":[146],"task":[148],"by":[150,165,181],"maximum":[152,167],"11%":[154],"an":[156,171],"average":[157,172],"3%,":[159],"significantly":[161],"accelerated":[162],"convergence":[163],"speed":[164],"1034%":[169],"362%,":[174],"efficiency":[177],"also":[179],"improved":[180],"approximately":[182],"times.":[184],"Moreover,":[185],"positive":[186],"optimization":[187],"observed":[189],"even":[190],"low-quality":[192],"predicted":[193],"structures.":[194],"The":[195],"source":[196],"code":[197],"available":[201],"at":[202],"https://github.com/tyang816/SES-Adapter.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
