{"id":"https://openalex.org/W4401116262","doi":"https://doi.org/10.1021/acs.jcim.4c00669","title":"Fully Flexible Molecular Alignment Enables Accurate Ligand Structure Modeling","display_name":"Fully Flexible Molecular Alignment Enables Accurate Ligand Structure Modeling","publication_year":2024,"publication_date":"2024-07-29","ids":{"openalex":"https://openalex.org/W4401116262","doi":"https://doi.org/10.1021/acs.jcim.4c00669","pmid":"https://pubmed.ncbi.nlm.nih.gov/39074901"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00669","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00669","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100409115","display_name":"Zhihao Wang","orcid":"https://orcid.org/0000-0001-6924-4079"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Wang","raw_affiliation_strings":["School of Physics, Shandong University, Jinan, 250100, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University, Jinan, 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100403505","display_name":"Fan Zhou","orcid":"https://orcid.org/0000-0002-8038-8150"},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Zhou","raw_affiliation_strings":["Shanghai Zelixir Biotech, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210159344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101519736","display_name":"Zechen Wang","orcid":"https://orcid.org/0000-0003-4554-133X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zechen Wang","raw_affiliation_strings":["School of Physics, Shandong University, Jinan, 250100, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University, Jinan, 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073364442","display_name":"Qiuyue Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiuyue Hu","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100462244","display_name":"Yongqiang Li","orcid":"https://orcid.org/0000-0003-1551-3020"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong-Qiang Li","raw_affiliation_strings":["School of Physics, Shandong University, Jinan, 250100, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University, Jinan, 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Shanghai Zelixir Biotech, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210159344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029472602","display_name":"Liangzhen Zheng","orcid":"https://orcid.org/0000-0003-1179-2106"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]},{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liangzhen Zheng","raw_affiliation_strings":["Shanghai Zelixir Biotech, Shanghai, 200030, China","Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210159344"]},{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007365792","display_name":"Weifeng Li","orcid":"https://orcid.org/0000-0002-0244-2908"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weifeng Li","raw_affiliation_strings":["School of Physics, Shandong University, Jinan, 250100, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shandong University, Jinan, 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073136684","display_name":"Xiangda Peng","orcid":"https://orcid.org/0000-0001-9013-3090"},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangda Peng","raw_affiliation_strings":["Shanghai Zelixir Biotech, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech, Shanghai, 200030, China","institution_ids":["https://openalex.org/I4210159344"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5007365792","https://openalex.org/A5029472602","https://openalex.org/A5073136684"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210159344"],"apc_list":null,"apc_paid":null,"fwci":1.8085,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86467432,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"64","issue":"15","first_page":"6205","last_page":"6215"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.970300018787384,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5520039200782776},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5060204863548279},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.28754937648773193},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.05605015158653259}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5520039200782776},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5060204863548279},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.28754937648773193},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.05605015158653259},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c00669","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00669","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39074901","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39074901","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1597517502","display_name":null,"funder_award_id":"YDZX2022089","funder_id":"https://openalex.org/F4320338074","funder_display_name":"Government of Shandong Province"},{"id":"https://openalex.org/G6591655030","display_name":null,"funder_award_id":"2023YFA0915500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G840821475","display_name":null,"funder_award_id":"ZR2020JQ04","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338074","display_name":"Government of Shandong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1653739410","https://openalex.org/W1968319881","https://openalex.org/W1975447903","https://openalex.org/W1994037959","https://openalex.org/W2000864931","https://openalex.org/W2025006523","https://openalex.org/W2025970767","https://openalex.org/W2030286884","https://openalex.org/W2045683699","https://openalex.org/W2052030759","https://openalex.org/W2058181174","https://openalex.org/W2067236515","https://openalex.org/W2102475066","https://openalex.org/W2114162221","https://openalex.org/W2123356345","https://openalex.org/W2134967712","https://openalex.org/W2138825634","https://openalex.org/W2144659448","https://openalex.org/W2147993766","https://openalex.org/W2148512505","https://openalex.org/W2152964937","https://openalex.org/W2169678694","https://openalex.org/W2559890467","https://openalex.org/W2789748145","https://openalex.org/W2909063104","https://openalex.org/W2921473648","https://openalex.org/W2944535254","https://openalex.org/W2949223833","https://openalex.org/W2949867299","https://openalex.org/W2971801381","https://openalex.org/W2974531988","https://openalex.org/W2985816842","https://openalex.org/W2985881898","https://openalex.org/W2999639376","https://openalex.org/W3012012790","https://openalex.org/W3081528324","https://openalex.org/W3098189759","https://openalex.org/W3157078379","https://openalex.org/W3168430821","https://openalex.org/W3168436232","https://openalex.org/W3177828909","https://openalex.org/W3209909976","https://openalex.org/W4200509818","https://openalex.org/W4210716706","https://openalex.org/W4213370488","https://openalex.org/W4283013935","https://openalex.org/W4293475204","https://openalex.org/W4310018788","https://openalex.org/W4311048978","https://openalex.org/W4379600614","https://openalex.org/W4386046621","https://openalex.org/W4386151261","https://openalex.org/W4386623903","https://openalex.org/W4387357260","https://openalex.org/W4394014753"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Accurate":[0],"protein-ligand":[1,187],"binding":[2,9,35,72,184],"poses":[3,36,185],"are":[4,67],"the":[5,14,42,47,60,127,191],"prerequisites":[6],"of":[7,34,46,50,143,149,163,193],"structure-based":[8],"affinity":[10],"prediction":[11],"and":[12,44,156,161],"provide":[13,31],"structural":[15,118],"basis":[16],"for":[17,37,123],"in-depth":[18],"lead":[19],"optimization":[20],"in":[21,180,186],"small":[22,51,194],"molecule":[23,195],"drug":[24],"design.":[25],"However,":[26,83],"it":[27],"is":[28,86,198],"challenging":[29],"to":[30,41,69,79,95,100],"reasonable":[32],"predictions":[33],"different":[38],"molecules":[39,66,91],"due":[40],"complexity":[43],"diversity":[45],"chemical":[48],"space":[49],"molecules.":[52,174],"Similarity-based":[53],"molecular":[54,84,130],"alignment":[55,102,112],"techniques":[56],"can":[57,154],"effectively":[58],"narrow":[59],"search":[61],"range,":[62],"as":[63,120,201],"structurally":[64],"similar":[65,71],"likely":[68],"have":[70],"modes,":[73],"with":[74,172],"higher":[75,80,140],"similarity":[76,85],"usually":[77],"correlated":[78],"success":[81,137],"rates.":[82],"not":[87],"consistently":[88],"high":[89,167],"because":[90],"often":[92],"require":[93],"changes":[94],"achieve":[96],"specific":[97],"purposes,":[98],"leading":[99],"reduced":[101],"precision.":[103],"To":[104],"address":[105],"this":[106],"issue,":[107],"we":[108],"propose":[109],"a":[110,121,166,202],"new":[111],"method\u2500Z-align.":[113],"This":[114],"method":[115,134],"uses":[116],"topological":[117],"information":[119],"criterion":[122],"evaluating":[124],"similarity,":[125],"reducing":[126],"reliance":[128],"on":[129],"fingerprint":[131],"similarity.":[132,150],"Our":[133],"has":[135],"achieved":[136],"rates":[138],"significantly":[139],"than":[141],"those":[142],"other":[144],"methods":[145],"at":[146,205],"moderate":[147],"levels":[148],"Additionally,":[151],"our":[152,176],"approach":[153],"comprehensively":[155],"flexibly":[157],"optimize":[158],"bond":[159],"lengths":[160],"angles":[162],"molecules,":[164],"maintaining":[165],"accuracy":[168],"even":[169],"when":[170],"dealing":[171],"larger":[173],"Consequently,":[175],"proposed":[177],"solution":[178],"helps":[179],"achieving":[181],"more":[182],"accurate":[183],"docking":[188],"problems,":[189],"facilitating":[190],"development":[192],"drugs.":[196],"Z-align":[197],"freely":[199],"available":[200],"web":[203],"server":[204],"https://cloud.zelixir.com/zalign/home.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
