{"id":"https://openalex.org/W4400447881","doi":"https://doi.org/10.1021/acs.jcim.4c00355","title":"CageCavityCalc ( <i>C</i> 3): A Computational Tool for Calculating and Visualizing Cavities in Molecular Cages","display_name":"CageCavityCalc ( <i>C</i> 3): A Computational Tool for Calculating and Visualizing Cavities in Molecular Cages","publication_year":2024,"publication_date":"2024-07-09","ids":{"openalex":"https://openalex.org/W4400447881","doi":"https://doi.org/10.1021/acs.jcim.4c00355","pmid":"https://pubmed.ncbi.nlm.nih.gov/38980812"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00355","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00355","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.4c00355","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001891484","display_name":"Vicente Mart\u00ed\u2010Centelles","orcid":"https://orcid.org/0000-0002-9142-9392"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Vicente Mart\u00ed-Centelles","raw_affiliation_strings":["CIBER de Bioingenier\u00eda Biomateriales y Nanomedicina, Instituto de Salud Carlos III, Madrid 28029, Spain","Departamento de Qu\u00edmica, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, Valencia 46022, Spain","Instituto Interuniversitario de Investigaci\u00f3n de Reconocimiento Molecular y Desarrollo Tecnol\u00f3gico (IDM), Universitat Polit\u00e8cnica de Val\u00e8ncia, Universitat de Val\u00e8ncia, Camino de Vera s/n, Valencia 46022, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9142-9392","affiliations":[{"raw_affiliation_string":"CIBER de Bioingenier\u00eda Biomateriales y Nanomedicina, Instituto de Salud Carlos III, Madrid 28029, Spain","institution_ids":["https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Departamento de Qu\u00edmica, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"Instituto Interuniversitario de Investigaci\u00f3n de Reconocimiento Molecular y Desarrollo Tecnol\u00f3gico (IDM), Universitat Polit\u00e8cnica de Val\u00e8ncia, Universitat de Val\u00e8ncia, Camino de Vera s/n, Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951","https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036720694","display_name":"Tomasz K. Piskorz","orcid":"https://orcid.org/0000-0003-0716-6874"},"institutions":[{"id":"https://openalex.org/I131579929","display_name":"Mansfield University","ror":"https://ror.org/01emtgd92","country_code":"US","type":"education","lineage":["https://openalex.org/I131579929"]},{"id":"https://openalex.org/I2802123492","display_name":"Oxford Research Group","ror":"https://ror.org/00z4w4f29","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802123492"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Tomasz K. Piskorz","raw_affiliation_strings":["Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K"],"raw_orcid":"https://orcid.org/0000-0003-0716-6874","affiliations":[{"raw_affiliation_string":"Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K","institution_ids":["https://openalex.org/I131579929","https://openalex.org/I2802123492"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080148464","display_name":"Fernanda Duarte","orcid":"https://orcid.org/0000-0002-6062-8209"},"institutions":[{"id":"https://openalex.org/I131579929","display_name":"Mansfield University","ror":"https://ror.org/01emtgd92","country_code":"US","type":"education","lineage":["https://openalex.org/I131579929"]},{"id":"https://openalex.org/I2802123492","display_name":"Oxford Research Group","ror":"https://ror.org/00z4w4f29","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802123492"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Fernanda Duarte","raw_affiliation_strings":["Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K"],"raw_orcid":"https://orcid.org/0000-0002-6062-8209","affiliations":[{"raw_affiliation_string":"Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K","institution_ids":["https://openalex.org/I131579929","https://openalex.org/I2802123492"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001891484","https://openalex.org/A5080148464"],"corresponding_institution_ids":["https://openalex.org/I131579929","https://openalex.org/I16097986","https://openalex.org/I2801357902","https://openalex.org/I2802123492","https://openalex.org/I60053951"],"apc_list":null,"apc_paid":null,"fwci":8.5887,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.98555892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"64","issue":"14","first_page":"5604","last_page":"5616"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13047","display_name":"Pharmacological Receptor Mechanisms and Effects","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4195471704006195},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.36509937047958374},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3498843312263489},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.32641905546188354},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.32267314195632935},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3041805624961853},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1708175241947174}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4195471704006195},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.36509937047958374},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3498843312263489},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.32641905546188354},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.32267314195632935},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3041805624961853},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1708175241947174}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016062","descriptor_name":"Porosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.4c00355","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00355","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38980812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38980812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:riunet.upv.es:10251/214531","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/214531","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11267575","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11267575","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.4c00355","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00355","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2788643634","display_name":null,"funder_award_id":"EP/W009803/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3239203624","display_name":"Electrostatic Catalysis","funder_award_id":"EP/W010666/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7830792668","display_name":null,"funder_award_id":"EP/W010666/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W1493508983","https://openalex.org/W1972121438","https://openalex.org/W1975058685","https://openalex.org/W1978316605","https://openalex.org/W1982503491","https://openalex.org/W1997917406","https://openalex.org/W1999335455","https://openalex.org/W2005488138","https://openalex.org/W2013836123","https://openalex.org/W2019498797","https://openalex.org/W2020288705","https://openalex.org/W2025860914","https://openalex.org/W2028918517","https://openalex.org/W2034542871","https://openalex.org/W2047730466","https://openalex.org/W2050373956","https://openalex.org/W2051622977","https://openalex.org/W2053294416","https://openalex.org/W2061650979","https://openalex.org/W2063298529","https://openalex.org/W2063725620","https://openalex.org/W2081270303","https://openalex.org/W2081872306","https://openalex.org/W2084828082","https://openalex.org/W2086178214","https://openalex.org/W2088395107","https://openalex.org/W2092988196","https://openalex.org/W2094956070","https://openalex.org/W2094997513","https://openalex.org/W2101025022","https://openalex.org/W2103794058","https://openalex.org/W2105902442","https://openalex.org/W2106315897","https://openalex.org/W2108862685","https://openalex.org/W2118902670","https://openalex.org/W2126773213","https://openalex.org/W2131080603","https://openalex.org/W2131676587","https://openalex.org/W2131777290","https://openalex.org/W2158076215","https://openalex.org/W2160238947","https://openalex.org/W2164088236","https://openalex.org/W2169242540","https://openalex.org/W2169678694","https://openalex.org/W2171312987","https://openalex.org/W2183132306","https://openalex.org/W2273965959","https://openalex.org/W2319902168","https://openalex.org/W2467187082","https://openalex.org/W2510475640","https://openalex.org/W2547495690","https://openalex.org/W2565825795","https://openalex.org/W2621171687","https://openalex.org/W2657089668","https://openalex.org/W2762073982","https://openalex.org/W2788166458","https://openalex.org/W2799161498","https://openalex.org/W2889593484","https://openalex.org/W2891112270","https://openalex.org/W2893471587","https://openalex.org/W2904209188","https://openalex.org/W2909813131","https://openalex.org/W2913700118","https://openalex.org/W2915655911","https://openalex.org/W2915714446","https://openalex.org/W2942252912","https://openalex.org/W2982437619","https://openalex.org/W2994933009","https://openalex.org/W3003257820","https://openalex.org/W3005152559","https://openalex.org/W3035965352","https://openalex.org/W3037876848","https://openalex.org/W3087743505","https://openalex.org/W3099878876","https://openalex.org/W3103145119","https://openalex.org/W3103588515","https://openalex.org/W3110291329","https://openalex.org/W3124502979","https://openalex.org/W3126139346","https://openalex.org/W3169620691","https://openalex.org/W3176040596","https://openalex.org/W3195588649","https://openalex.org/W4200077323","https://openalex.org/W4200613668","https://openalex.org/W4210412563","https://openalex.org/W4211072423","https://openalex.org/W4220948469","https://openalex.org/W4225289262","https://openalex.org/W4229051348","https://openalex.org/W4282944566","https://openalex.org/W4283374866","https://openalex.org/W4286559882","https://openalex.org/W4293095771","https://openalex.org/W4308179945","https://openalex.org/W4310459977","https://openalex.org/W4317553726","https://openalex.org/W4320006285","https://openalex.org/W4367668471","https://openalex.org/W4368357923","https://openalex.org/W4386543772","https://openalex.org/W4393935500"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"High":[0],"Resolution":[1],"Image":[2],"Download":[3],"MS":[4],"PowerPoint":[5],"Slide":[6],"Organic(porous)":[7],"and":[8,21,47,65,135,151],"metal\u2013organic":[9],"cages":[10,67],"are":[11],"promising":[12],"biomimetic":[13],"platforms":[14],"with":[15,68],"diverse":[16,64],"applications":[17],"spanning":[18],"recognition,":[19],"sensing,":[20],"catalysis.":[22],"The":[23,106],"key":[24],"to":[25,192],"the":[26,32,53,59,82,100,122,145,160,163,204,218],"emergence":[27],"of":[28,34,39,44,62,84,103,125,132,144,206,220],"these":[29],"functions":[30],"is":[31,78,108],"presence":[33],"well-defined":[35],"inner":[36],"cavities":[37],"capable":[38],"binding":[40],"a":[41,95,117,129,184],"wide":[42,130],"range":[43,131],"guest":[45],"molecules":[46],"modulating":[48],"their":[49],"properties.":[50],"However,":[51],"despite":[52],"myriad":[54],"cage":[55,213],"architectures":[56],"currently":[57],"available,":[58],"rational":[60],"design":[61],"structurally":[63],"functional":[66,86,221],"specific":[69],"host\u2013guest":[70,157],"properties":[71,77],"remains":[72],"challenging.":[73],"Efficiently":[74],"predicting":[75],"such":[76,174],"critical":[79],"for":[80,98,128],"accelerating":[81,217],"discovery":[83,219],"novel":[85,118],"cages.":[87,105,222],"Herein,":[88],"we":[89],"introduce":[90],"CageCavityCalc":[91],"(":[92],"C":[93,139],"3),":[94],"Python-based":[96],"tool":[97,195,209],"calculating":[99],"cavity":[101,126,147,165,214],"size":[102,148],"molecular":[104,133],"code":[107],"available":[109,171],"on":[110],"GitHub":[111],"at":[112],"https://github.com/VicenteMartiCentelles/CageCavityCalc":[113],".":[114],"C3":[115],"utilizes":[116],"algorithm":[119],"that":[120,203],"enables":[121],"rapid":[123],"calculation":[124],"sizes":[127],"structures":[134],"porous":[136],"systems.":[137],"Moreover,":[138],"3":[140],"facilitates":[141],"easy":[142],"visualization":[143,172],"computed":[146],"alongside":[149],"hydrophobic":[150],"electrostatic":[152],"potentials,":[153],"providing":[154],"insights":[155],"into":[156],"interactions":[158],"within":[159],"cage.":[161],"Furthermore,":[162],"calculated":[164],"can":[166],"be":[167],"visualized":[168],"using":[169],"widely":[170],"software,":[173],"as":[175],"PyMol,":[176],"VMD,":[177],"or":[178],"ChimeraX.":[179],"To":[180],"enhance":[181],"user":[182],"accessibility,":[183],"PyMol":[185],"plugin":[186],"has":[187],"been":[188],"created,":[189],"allowing":[190],"nonspecialists":[191],"use":[193],"this":[194,207],"without":[196],"requiring":[197],"computer":[198],"programming":[199],"expertise.":[200],"We":[201],"anticipate":[202],"deployment":[205],"computational":[208],"will":[210],"significantly":[211],"streamline":[212],"calculations,":[215],"thereby":[216]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":7}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2024-07-10T00:00:00"}
