{"id":"https://openalex.org/W4400183654","doi":"https://doi.org/10.1021/acs.jcim.4c00342","title":"Scaffold-Hopped Compound Identification by Ligand-Based Approaches with a Prospective Affinity Test","display_name":"Scaffold-Hopped Compound Identification by Ligand-Based Approaches with a Prospective Affinity Test","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400183654","doi":"https://doi.org/10.1021/acs.jcim.4c00342","pmid":"https://pubmed.ncbi.nlm.nih.gov/38950192"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00342","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00342","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00342","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00342","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087319223","display_name":"Itsuki Maeda","orcid":"https://orcid.org/0000-0001-8097-6166"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Itsuki Maeda","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan"],"raw_orcid":"https://orcid.org/0000-0001-8097-6166","affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052401015","display_name":"Shunsuke Tamura","orcid":"https://orcid.org/0000-0003-4889-6603"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shunsuke Tamura","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan"],"raw_orcid":"https://orcid.org/0000-0003-4889-6603","affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110443328","display_name":"Yoshihiro Ogura","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104626","display_name":"Daiichi-Sankyo (Japan)","ror":"https://ror.org/027y26122","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210104626"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Ogura","raw_affiliation_strings":["Medicinal Chemistry Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan","institution_ids":["https://openalex.org/I4210104626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090829980","display_name":"Takayuki Serizawa","orcid":"https://orcid.org/0000-0002-0576-9439"},"institutions":[{"id":"https://openalex.org/I4210104626","display_name":"Daiichi-Sankyo (Japan)","ror":"https://ror.org/027y26122","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210104626"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takayuki Serizawa","raw_affiliation_strings":["Medicinal Chemistry Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan","institution_ids":["https://openalex.org/I4210104626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103087279","display_name":"Takashi Shimada","orcid":"https://orcid.org/0000-0002-4310-4235"},"institutions":[{"id":"https://openalex.org/I4210104626","display_name":"Daiichi-Sankyo (Japan)","ror":"https://ror.org/027y26122","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210104626"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takashi Shimada","raw_affiliation_strings":["Structure-Based Drug Design Group, Organic & Biomolecular Chemistry Department, Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan"],"raw_orcid":"https://orcid.org/0000-0002-4310-4235","affiliations":[{"raw_affiliation_string":"Structure-Based Drug Design Group, Organic & Biomolecular Chemistry Department, Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan","institution_ids":["https://openalex.org/I4210104626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082844597","display_name":"Ryo Kunimoto","orcid":"https://orcid.org/0000-0003-4895-9686"},"institutions":[{"id":"https://openalex.org/I4210104626","display_name":"Daiichi-Sankyo (Japan)","ror":"https://ror.org/027y26122","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210104626"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ryo Kunimoto","raw_affiliation_strings":["Discovery Intelligence Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan"],"raw_orcid":"https://orcid.org/0000-0003-4895-9686","affiliations":[{"raw_affiliation_string":"Discovery Intelligence Research Laboratories, R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan","institution_ids":["https://openalex.org/I4210104626"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007145690","display_name":"Tomoyuki Miyao","orcid":"https://orcid.org/0000-0002-8769-2702"},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tomoyuki Miyao","raw_affiliation_strings":["Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan","Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan"],"raw_orcid":"https://orcid.org/0000-0002-8769-2702","affiliations":[{"raw_affiliation_string":"Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan","institution_ids":["https://openalex.org/I75917431"]},{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007145690","https://openalex.org/A5082844597"],"corresponding_institution_ids":["https://openalex.org/I4210104626","https://openalex.org/I75917431"],"apc_list":null,"apc_paid":null,"fwci":1.1529,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.79901422,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"64","issue":"14","first_page":"5557","last_page":"5569"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7223303914070129},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.565163254737854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5022025108337402},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4738785922527313},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.4620833098888397},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4460050165653229},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4212692975997925},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.42010068893432617},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.3906642496585846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.379092812538147},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.2523233890533447},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18409833312034607},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.138459712266922}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7223303914070129},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.565163254737854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5022025108337402},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4738785922527313},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.4620833098888397},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4460050165653229},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4212692975997925},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.42010068893432617},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.3906642496585846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.379092812538147},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2523233890533447},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18409833312034607},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.138459712266922},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.4c00342","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00342","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00342","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38950192","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38950192","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11267578","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11267578","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11267578/pdf/ci4c00342.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},{"id":"pmh:oai:irdb.nii.ac.jp:01146:0006859820","is_oa":true,"landing_page_url":"https://naist.repo.nii.ac.jp/records/2001041","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.4c00342","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00342","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00342","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1815017171","display_name":"\u65b0\u898f\u9aa8\u683c\u69cb\u9020\u3092\u6709\u3059\u308b\u533b\u85ac\u54c1\u5019\u88dc\u5316\u5408\u7269\u63a2\u7d22\u624b\u6cd5\u306e\u958b\u767a","funder_award_id":"23KJ1582","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320324900","display_name":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn","ror":"https://ror.org/041nas322"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400183654.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1604884792","https://openalex.org/W1966716734","https://openalex.org/W1968319881","https://openalex.org/W1974240614","https://openalex.org/W1988037271","https://openalex.org/W1993452491","https://openalex.org/W2020118174","https://openalex.org/W2027065525","https://openalex.org/W2031168104","https://openalex.org/W2031372687","https://openalex.org/W2043202573","https://openalex.org/W2052933929","https://openalex.org/W2053558984","https://openalex.org/W2060531713","https://openalex.org/W2061937956","https://openalex.org/W2065014569","https://openalex.org/W2071579644","https://openalex.org/W2081240806","https://openalex.org/W2081301924","https://openalex.org/W2087347434","https://openalex.org/W2107845562","https://openalex.org/W2114162221","https://openalex.org/W2130479394","https://openalex.org/W2132049552","https://openalex.org/W2159675211","https://openalex.org/W2160592148","https://openalex.org/W2200017991","https://openalex.org/W2208203352","https://openalex.org/W2221103459","https://openalex.org/W2320534770","https://openalex.org/W2412446857","https://openalex.org/W2562257444","https://openalex.org/W2885883357","https://openalex.org/W2899216155","https://openalex.org/W2900090807","https://openalex.org/W2969617645","https://openalex.org/W3012836410","https://openalex.org/W3094640617","https://openalex.org/W3097145107","https://openalex.org/W3168436232","https://openalex.org/W4230674625","https://openalex.org/W4234756747","https://openalex.org/W4303475549"],"related_works":["https://openalex.org/W3180887190","https://openalex.org/W2320211095","https://openalex.org/W2308164565","https://openalex.org/W2062768126","https://openalex.org/W3003855012","https://openalex.org/W2059230675","https://openalex.org/W2347569454","https://openalex.org/W4241018400","https://openalex.org/W4211208557","https://openalex.org/W1566373881"],"abstract_inverted_index":{"Scaffold-hopped":[0],"(SH)":[1],"compounds":[2,5,14,131,161],"are":[3],"bioactive":[4],"structurally":[6],"different":[7],"from":[8],"known":[9],"active":[10,144,183],"compounds.":[11,95],"Identifying":[12],"SH":[13,41,50,94,160],"in":[15,24,186],"the":[16,47,67,70,90,99,102,118,143,156,166,187],"ligand-based":[17],"approaches":[18],"has":[19],"been":[20,35],"a":[21,126],"central":[22],"issue":[23],"medicinal":[25],"chemistry,":[26],"and":[27,63,76,79,106,115,117],"various":[28],"molecular":[29,81],"representations":[30,39,55,82],"of":[31,49,72,93,101,121],"scaffold":[32],"hopping":[33],"have":[34],"proposed.":[36],"However,":[37],"appropriate":[38],"for":[40,89],"compound":[42,51],"identification":[43,52,92],"remain":[44],"unclear.":[45],"Herein,":[46],"ability":[48],"among":[53],"several":[54],"was":[56],"fairly":[57],"evaluated":[58],"based":[59],"on":[60],"retrospective":[61,68],"validation":[62],"prospective":[64,157],"demonstration.":[65],"In":[66,155],"validation,":[69],"combinations":[71],"two":[73],"screening":[74,165,176],"algorithms":[75],"four":[77],"two-":[78],"three-dimensional":[80],"were":[83,133,152,162,196],"compared":[84],"using":[85,169,177],"controlled":[86],"data":[87],"sets":[88],"early":[91],"We":[96],"found":[97],"that":[98,132],"combination":[100],"support":[103],"vector":[104],"machine":[105],"extended":[107],"connectivity":[108],"fingerprint":[109],"with":[110,142,191],"bond":[111],"diameter":[112],"4":[113],"(SVM-ECFP4)":[114],"SVM":[116],"rapid":[119],"overlay":[120],"chemical":[122],"structures":[123],"(SVM-ROCS)":[124],"showed":[125],"relatively":[127],"high":[128],"performance.":[129],"The":[130,174],"highly":[134],"ranked":[135,149],"by":[136,150,164],"SVM-ROCS":[137],"did":[138],"not":[139],"share":[140],"substructures":[141],"training":[145],"compounds,":[146],"while":[147],"those":[148],"SVM-ECFP4":[151],"mostly":[153],"recombinant.":[154],"demonstration,":[158],"93":[159],"prepared":[163],"Namiki":[167],"database":[168],"SVM-ROCS,":[170],"targeting":[171],"ABL1":[172],"inhibitors.":[173],"primary":[175],"surface":[178],"plasmon":[179],"resonance":[180],"suggested":[181],"five":[182],"compounds;":[184],"however,":[185],"competitive":[188],"binding":[189],"assays":[190],"adenosine":[192],"triphosphate,":[193],"no":[194],"hits":[195],"found.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-10T00:00:00"}
