{"id":"https://openalex.org/W4394873331","doi":"https://doi.org/10.1021/acs.jcim.4c00227","title":"Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations","display_name":"Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations","publication_year":2024,"publication_date":"2024-04-17","ids":{"openalex":"https://openalex.org/W4394873331","doi":"https://doi.org/10.1021/acs.jcim.4c00227","pmid":"https://pubmed.ncbi.nlm.nih.gov/38630447"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00227","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00227","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.4c00227","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082662826","display_name":"Zhengyue Zhang","orcid":"https://orcid.org/0000-0002-5322-7087"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Zhengyue Zhang","raw_affiliation_strings":["CEITEC\u2212Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic","Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-5322-7087","affiliations":[{"raw_affiliation_string":"CEITEC\u2212Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]},{"raw_affiliation_string":"National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054472409","display_name":"Vojt\u011bch Ml\u00fdnsk\u00fd","orcid":"https://orcid.org/0000-0003-2769-1553"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vojt\u011bch Ml\u00fdnsk\u00fd","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-2769-1553","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009175551","display_name":"Miroslav Krepl","orcid":"https://orcid.org/0000-0002-9833-4281"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Miroslav Krepl","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-9833-4281","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026399646","display_name":"Ji\u0159\u0131\u0301 \u0160poner","orcid":"https://orcid.org/0000-0001-6558-6186"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ji\u0159\u00ed \u0160poner","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0001-6558-6186","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028187203","display_name":"Petr Stadlbauer","orcid":"https://orcid.org/0000-0002-5470-8376"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Petr Stadlbauer","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-5470-8376","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, Brno 61200, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028187203"],"corresponding_institution_ids":["https://openalex.org/I4210089928"],"apc_list":null,"apc_paid":null,"fwci":1.0049,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.74289185,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"64","issue":"9","first_page":"3896","last_page":"3911"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/g-quadruplex","display_name":"G-quadruplex","score":0.7398110628128052},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.734542965888977},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.6771628260612488},{"id":"https://openalex.org/keywords/slippage","display_name":"Slippage","score":0.6121654510498047},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6016907095909119},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4397997558116913},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.38745832443237305},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3205726444721222},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1891956925392151},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.15287965536117554}],"concepts":[{"id":"https://openalex.org/C83762044","wikidata":"https://www.wikidata.org/wiki/Q411641","display_name":"G-quadruplex","level":3,"score":0.7398110628128052},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.734542965888977},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6771628260612488},{"id":"https://openalex.org/C2776096238","wikidata":"https://www.wikidata.org/wiki/Q6130172","display_name":"Slippage","level":2,"score":0.6121654510498047},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6016907095909119},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4397997558116913},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.38745832443237305},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3205726444721222},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1891956925392151},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.15287965536117554},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055595","descriptor_name":"Mechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.4c00227","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00227","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38630447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38630447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11094737","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11094737","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11094737/pdf/ci4c00227.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.4c00227","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00227","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4399999976158142,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G5530956659","display_name":null,"funder_award_id":"21-23718S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":161,"referenced_works":["https://openalex.org/W922834","https://openalex.org/W203363010","https://openalex.org/W1523125680","https://openalex.org/W1894711354","https://openalex.org/W1914649288","https://openalex.org/W1942920752","https://openalex.org/W1964086912","https://openalex.org/W1969189143","https://openalex.org/W1971985277","https://openalex.org/W1975566644","https://openalex.org/W1976499671","https://openalex.org/W1981225934","https://openalex.org/W1981840107","https://openalex.org/W1984854099","https://openalex.org/W1985907793","https://openalex.org/W1986648841","https://openalex.org/W1991601892","https://openalex.org/W1994809040","https://openalex.org/W1996154258","https://openalex.org/W1998085469","https://openalex.org/W2001785938","https://openalex.org/W2002025936","https://openalex.org/W2007880166","https://openalex.org/W2010051472","https://openalex.org/W2012293288","https://openalex.org/W2024721587","https://openalex.org/W2025228898","https://openalex.org/W2028498464","https://openalex.org/W2028953093","https://openalex.org/W2029667189","https://openalex.org/W2032486500","https://openalex.org/W2034512710","https://openalex.org/W2035687084","https://openalex.org/W2037863064","https://openalex.org/W2038929178","https://openalex.org/W2039330528","https://openalex.org/W2039880173","https://openalex.org/W2039986352","https://openalex.org/W2040847130","https://openalex.org/W2042994965","https://openalex.org/W2044723896","https://openalex.org/W2046320299","https://openalex.org/W2047210598","https://openalex.org/W2049475242","https://openalex.org/W2051229583","https://openalex.org/W2053586924","https://openalex.org/W2055556069","https://openalex.org/W2057477511","https://openalex.org/W2057640610","https://openalex.org/W2058306355","https://openalex.org/W2060386011","https://openalex.org/W2062724831","https://openalex.org/W2063273283","https://openalex.org/W2063702714","https://openalex.org/W2066690664","https://openalex.org/W2067174909","https://openalex.org/W2068049270","https://openalex.org/W2069885913","https://openalex.org/W2071453065","https://openalex.org/W2076314977","https://openalex.org/W2076335297","https://openalex.org/W2079768304","https://openalex.org/W2080923819","https://openalex.org/W2081159106","https://openalex.org/W2081693079","https://openalex.org/W2082168427","https://openalex.org/W2083276919","https://openalex.org/W2083703501","https://openalex.org/W2088047441","https://openalex.org/W2088456802","https://openalex.org/W2088844185","https://openalex.org/W2089527788","https://openalex.org/W2089619525","https://openalex.org/W2093275781","https://openalex.org/W2093320042","https://openalex.org/W2094690099","https://openalex.org/W2096481692","https://openalex.org/W2097928736","https://openalex.org/W2105543230","https://openalex.org/W2106140689","https://openalex.org/W2115218099","https://openalex.org/W2122475097","https://openalex.org/W2124423899","https://openalex.org/W2126398144","https://openalex.org/W2129800037","https://openalex.org/W2132629607","https://openalex.org/W2146411229","https://openalex.org/W2150093019","https://openalex.org/W2155414988","https://openalex.org/W2170240523","https://openalex.org/W2170453701","https://openalex.org/W2170711116","https://openalex.org/W2171830519","https://openalex.org/W2172060739","https://openalex.org/W2271579024","https://openalex.org/W2275411324","https://openalex.org/W2314002872","https://openalex.org/W2314252118","https://openalex.org/W2318033929","https://openalex.org/W2318161296","https://openalex.org/W2328901289","https://openalex.org/W2332712348","https://openalex.org/W2344252179","https://openalex.org/W2510475640","https://openalex.org/W2518087534","https://openalex.org/W2537246643","https://openalex.org/W2556695498","https://openalex.org/W2561564177","https://openalex.org/W2590327834","https://openalex.org/W2595859407","https://openalex.org/W2610750301","https://openalex.org/W2617223242","https://openalex.org/W2724349047","https://openalex.org/W2737371027","https://openalex.org/W2770563537","https://openalex.org/W2782369838","https://openalex.org/W2799773617","https://openalex.org/W2904668937","https://openalex.org/W2918019000","https://openalex.org/W2929870603","https://openalex.org/W2951831607","https://openalex.org/W2953085595","https://openalex.org/W2969512040","https://openalex.org/W2977231214","https://openalex.org/W2980565286","https://openalex.org/W3006884793","https://openalex.org/W3017349264","https://openalex.org/W3026365268","https://openalex.org/W3035965352","https://openalex.org/W3046434230","https://openalex.org/W3083572893","https://openalex.org/W3099878876","https://openalex.org/W3105643282","https://openalex.org/W3122863656","https://openalex.org/W3123384049","https://openalex.org/W3132995658","https://openalex.org/W3159185663","https://openalex.org/W3166193066","https://openalex.org/W3176438142","https://openalex.org/W3181567073","https://openalex.org/W3192328034","https://openalex.org/W3198188221","https://openalex.org/W3206907992","https://openalex.org/W3209202935","https://openalex.org/W3217379700","https://openalex.org/W4220760543","https://openalex.org/W4220991348","https://openalex.org/W4236002076","https://openalex.org/W4283591586","https://openalex.org/W4294295937","https://openalex.org/W4297372980","https://openalex.org/W4307219071","https://openalex.org/W4328129849","https://openalex.org/W4379796854","https://openalex.org/W4380576779","https://openalex.org/W4384560243","https://openalex.org/W4385331470","https://openalex.org/W4385456027","https://openalex.org/W4386285208","https://openalex.org/W4388517902","https://openalex.org/W4388819022"],"related_works":["https://openalex.org/W2917225013","https://openalex.org/W845789065","https://openalex.org/W2039606477","https://openalex.org/W2361542615","https://openalex.org/W585312555","https://openalex.org/W2055370323","https://openalex.org/W2052447287","https://openalex.org/W2623595002","https://openalex.org/W2052460325","https://openalex.org/W1673912714"],"abstract_inverted_index":{"Guanine":[0],"quadruplex":[1],"(GQ)":[2],"is":[3,19],"a":[4,20,43,58,97,119,207],"noncanonical":[5],"nucleic":[6],"acid":[7],"structure":[8,33],"formed":[9],"by":[10],"guanine-rich":[11],"DNA":[12],"and":[13,35,92,126,147,168,180,184,196],"RNA":[14],"sequences.":[15],"Folding":[16],"of":[17,38,53,78,86,100,109,136,150,163,213],"GQs":[18,158],"complex":[21],"process,":[22],"where":[23],"several":[24],"aspects":[25],"remain":[26],"elusive,":[27],"despite":[28],"being":[29],"important":[30],"for":[31,46,155],"understanding":[32],"formation":[34],"biological":[36],"functions":[37],"GQs.":[39,54,81,214],"Pulling":[40],"experiments":[41],"are":[42],"common":[44],"tool":[45],"acquiring":[47],"insights":[48],"into":[49],"the":[50,75,106,114,134,137,143,148,164,178,189,211],"folding":[51],"landscape":[52],"Herein,":[55],"we":[56,103],"applied":[57],"computational":[59],"pulling":[60,110,144],"strategy\u2500steered":[61],"molecular":[62,69],"dynamics":[63,70],"(SMD)":[64],"simulations\u2500in":[65],"combination":[66],"with":[67],"standard":[68,197],"(MD)":[71],"simulations":[72,199],"to":[73,113,170],"explore":[74],"unfolding":[76,90,153,182],"landscapes":[77],"tetrameric":[79,156],"parallel":[80,157],"We":[82,131],"identified":[83],"anisotropic":[84],"properties":[85],"elastic":[87],"conformational":[88],"changes,":[89],"transitions,":[91],"GQ":[93,124],"mechanical":[94,129],"stabilities.":[95,130],"Using":[96],"special":[98],"set":[99],"structural":[101],"parameters,":[102],"found":[104],"that":[105,133,201],"vertical":[107,138],"component":[108,140],"force":[111,139],"(perpendicular":[112],"average":[115],"G-quartet":[116],"plane)":[117],"plays":[118],"significant":[120],"role":[121],"in":[122],"disrupting":[123],"structures":[125],"weakening":[127],"their":[128],"demonstrated":[132],"magnitude":[135],"depends":[141],"on":[142],"anchor":[145],"positions":[146],"number":[149],"G-quartets.":[151],"Typical":[152],"transitions":[154],"involve":[159],"base":[160],"unzipping,":[161],"opening":[162],"G-stem,":[165],"strand":[166],"slippage,":[167],"rotation":[169],"cross-like":[171],"structures.":[172],"The":[173],"unzipping":[174],"was":[175],"detected":[176],"as":[177,206],"first":[179],"dominant":[181],"event,":[183],"it":[185],"usually":[186],"started":[187],"at":[188],"3'-end.":[190],"Furthermore,":[191],"results":[192],"from":[193],"both":[194],"SMD":[195],"MD":[198],"indicate":[200],"partial":[202],"spiral":[203],"conformations":[204],"serve":[205],"transient":[208],"ensemble":[209],"during":[210],"(un)folding":[212]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
