{"id":"https://openalex.org/W4393939997","doi":"https://doi.org/10.1021/acs.jcim.4c00132","title":"Hodge Decomposition of Single-Cell RNA Velocity","display_name":"Hodge Decomposition of Single-Cell RNA Velocity","publication_year":2024,"publication_date":"2024-04-04","ids":{"openalex":"https://openalex.org/W4393939997","doi":"https://doi.org/10.1021/acs.jcim.4c00132","pmid":"https://pubmed.ncbi.nlm.nih.gov/38572676"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00132","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00132","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00132","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00132","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101980614","display_name":"Zhe Su","orcid":"https://orcid.org/0000-0003-3499-6814"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhe Su","raw_affiliation_strings":["Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042762771","display_name":"Yiying Tong","orcid":"https://orcid.org/0000-0002-7929-4333"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yiying Tong","raw_affiliation_strings":["Department of Computer Science and Engineering, Michigan State University, East Lansing, Michigan 48824, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Michigan State University, East Lansing, Michigan 48824, United States","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038778212","display_name":"Guo\u2010Wei Wei","orcid":"https://orcid.org/0000-0002-5781-2937"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guo-Wei Wei","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States","Department of Electrical and Computer Engineering, Michigan State University, East Lansing, Michigan 48824, United States","Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States"],"raw_orcid":"https://orcid.org/0000-0002-5781-2937","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Michigan State University, East Lansing, Michigan 48824, United States","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038778212","https://openalex.org/A5042762771"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":null,"apc_paid":null,"fwci":2.8439,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.90957238,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"64","issue":"8","first_page":"3558","last_page":"3568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vector-field","display_name":"Vector field","score":0.5287430286407471},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48926445841789246},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.4726523458957672},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.45685866475105286},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.42970722913742065},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3922586441040039},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32419195771217346},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.17972832918167114},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1747901439666748},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16679519414901733},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.11148667335510254}],"concepts":[{"id":"https://openalex.org/C91188154","wikidata":"https://www.wikidata.org/wiki/Q186247","display_name":"Vector field","level":2,"score":0.5287430286407471},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48926445841789246},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.4726523458957672},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.45685866475105286},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.42970722913742065},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3922586441040039},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32419195771217346},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.17972832918167114},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1747901439666748},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16679519414901733},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11148667335510254},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.4c00132","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00132","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00132","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38572676","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38572676","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11035094","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11035094","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11035094/pdf/ci4c00132.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.4c00132","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00132","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c00132","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1048490812","display_name":null,"funder_award_id":"R35GM148196","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2037743780","display_name":null,"funder_award_id":"DMS2052983","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2333693723","display_name":null,"funder_award_id":"R01AI164266","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4189064270","display_name":null,"funder_award_id":"R01GM126189","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4604530488","display_name":null,"funder_award_id":"80NSSC21M0023","funder_id":"https://openalex.org/F4320306101","funder_display_name":"National Aeronautics and Space Administration"},{"id":"https://openalex.org/G4934647071","display_name":null,"funder_award_id":"R35GM148196","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5509327845","display_name":null,"funder_award_id":"1761320","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6065440738","display_name":null,"funder_award_id":"65109","funder_id":"https://openalex.org/F4320307115","funder_display_name":"Bristol-Myers Squibb"},{"id":"https://openalex.org/G6223757425","display_name":null,"funder_award_id":"1900473","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6765076800","display_name":null,"funder_award_id":"R01AI164266","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6772009293","display_name":null,"funder_award_id":"IIS-1900473","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7398210851","display_name":null,"funder_award_id":"DMS-1761320","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G754965114","display_name":null,"funder_award_id":"IIS-1900473","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"},{"id":"https://openalex.org/F4320307115","display_name":"Bristol-Myers Squibb","ror":"https://ror.org/00gtmwv55"},{"id":"https://openalex.org/F4320310016","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320322037","display_name":"Nuclear Safety and Security Commission","ror":"https://ror.org/05qk3ge34"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332431","display_name":"College of Engineering, Michigan State University","ror":"https://ror.org/05hs6h993"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4393939997.pdf"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W46507908","https://openalex.org/W1530355788","https://openalex.org/W1981382127","https://openalex.org/W1986504569","https://openalex.org/W2002854257","https://openalex.org/W2015442042","https://openalex.org/W2017765063","https://openalex.org/W2073178762","https://openalex.org/W2087763194","https://openalex.org/W2094563755","https://openalex.org/W2123315447","https://openalex.org/W2156260168","https://openalex.org/W2327198928","https://openalex.org/W2474819416","https://openalex.org/W2766437506","https://openalex.org/W2800392236","https://openalex.org/W2889326414","https://openalex.org/W2902652978","https://openalex.org/W2906022956","https://openalex.org/W2923521062","https://openalex.org/W2944073176","https://openalex.org/W2984291132","https://openalex.org/W2989807288","https://openalex.org/W3047076447","https://openalex.org/W3047141442","https://openalex.org/W3048242768","https://openalex.org/W3082042165","https://openalex.org/W3100171530","https://openalex.org/W3132829024","https://openalex.org/W3145635506","https://openalex.org/W3159756629","https://openalex.org/W3164692211","https://openalex.org/W3209238322","https://openalex.org/W4205496949","https://openalex.org/W4210575300","https://openalex.org/W4220812447","https://openalex.org/W4237462020","https://openalex.org/W4255193216","https://openalex.org/W4292079233","https://openalex.org/W4311895189","https://openalex.org/W4385484161","https://openalex.org/W4391942914","https://openalex.org/W4392263494","https://openalex.org/W4393100251","https://openalex.org/W4394917959"],"related_works":["https://openalex.org/W2147993839","https://openalex.org/W2062195135","https://openalex.org/W1840103016","https://openalex.org/W54859794","https://openalex.org/W2064941026","https://openalex.org/W2359508303","https://openalex.org/W2380059383","https://openalex.org/W1983151649","https://openalex.org/W4224278052","https://openalex.org/W2057323302"],"abstract_inverted_index":{"RNA":[0,63,139],"velocity":[1,64,140],"has":[2],"the":[3,7,12,20,39,54,62,83,103,106,116],"ability":[4],"to":[5,48,125],"capture":[6],"cell":[8,21,50,89,94,98,128],"dynamic":[9,90,129],"information":[10],"in":[11,66],"biological":[13,29],"processes;":[14],"yet,":[15],"a":[16,32,67,73,76,120],"comprehensive":[17],"analysis":[18,133],"of":[19,61,102,105,137],"state":[22],"transitions":[23],"and":[24,28,58,97,122,134],"their":[25],"associated":[26],"chemical":[27],"processes":[30],"remains":[31],"gap.":[33],"In":[34],"this":[35],"work,":[36],"we":[37],"provide":[38],"Hodge":[40,117],"decomposition,":[41],"coupled":[42],"with":[43],"discrete":[44],"exterior":[45],"calculus":[46],"(DEC),":[47],"unveil":[49],"dynamics":[51],"by":[52],"examining":[53],"decomposed":[55,84],"curl-free,":[56],"divergence-free,":[57],"harmonic":[59],"components":[60,85],"field":[65],"low":[68],"dimensional":[69],"representation,":[70],"such":[71,92],"as":[72,93],"UMAP":[74],"or":[75],"t-SNE":[77],"representation.":[78],"Decomposition":[79],"results":[80],"show":[81],"that":[82,115],"distinctly":[86],"reveal":[87],"key":[88],"features":[91],"cycle,":[95],"bifurcation,":[96],"lineage":[99],"differentiation,":[100],"regardless":[101],"choice":[104],"low-dimensional":[107],"representations.":[108],"The":[109],"consistency":[110],"across":[111],"different":[112],"representations":[113],"demonstrates":[114],"decomposition":[118],"is":[119],"reliable":[121],"robust":[123],"way":[124],"extract":[126],"these":[127],"features,":[130],"offering":[131],"unique":[132],"insightful":[135],"visualization":[136],"single-cell":[138],"fields.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3}],"updated_date":"2026-06-14T07:44:22.658603","created_date":"2025-10-10T00:00:00"}
