{"id":"https://openalex.org/W4400246440","doi":"https://doi.org/10.1021/acs.jcim.4c00061","title":"Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning","display_name":"Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400246440","doi":"https://doi.org/10.1021/acs.jcim.4c00061","pmid":"https://pubmed.ncbi.nlm.nih.gov/38950938"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c00061","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00061","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067563876","display_name":"N. Inoue","orcid":"https://orcid.org/0009-0009-7324-0869"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Nanako Inoue","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114036556","display_name":"Tomokazu Shibata","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomokazu Shibata","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000602137","display_name":"Yusuke Tanaka","orcid":"https://orcid.org/0000-0002-7316-1425"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yusuke Tanaka","raw_affiliation_strings":["Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004446102","display_name":"Hiromu Taguchi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hiromu Taguchi","raw_affiliation_strings":["Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074894653","display_name":"Ryusuke Sawada","orcid":"https://orcid.org/0009-0002-5355-1204"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]},{"id":"https://openalex.org/I163770644","display_name":"Okayama University","ror":"https://ror.org/02pc6pc55","country_code":"JP","type":"education","lineage":["https://openalex.org/I163770644"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ryusuke Sawada","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","Graduate School of Medicine, Dentistry and Pharmaceutical Science, Okayama University, Shikata-cho, Kita-ku, Okayama 700-8558, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"Graduate School of Medicine, Dentistry and Pharmaceutical Science, Okayama University, Shikata-cho, Kita-ku, Okayama 700-8558, Japan","institution_ids":["https://openalex.org/I163770644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113275027","display_name":"Kenshin Goto","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kenshin Goto","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099846671","display_name":"Shogo Momokita","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shogo Momokita","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113275028","display_name":"Morihiro Aoyagi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Morihiro Aoyagi","raw_affiliation_strings":["Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055792451","display_name":"Takashi Hirao","orcid":"https://orcid.org/0000-0002-8738-5059"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Takashi Hirao","raw_affiliation_strings":["Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Research & Development Headquarters, House Foods Group Inc., 1-4 Takanodai, Yotsukaido, Chiba 284-0033, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035394108","display_name":"Yoshihiro Yamanishi","orcid":"https://orcid.org/0000-0003-2279-8773"},"institutions":[{"id":"https://openalex.org/I60134161","display_name":"Nagoya University","ror":"https://ror.org/04chrp450","country_code":"JP","type":"education","lineage":["https://openalex.org/I60134161"]},{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yoshihiro Yamanishi","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","Graduate School of Informatics, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"Graduate School of Informatics, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan","institution_ids":["https://openalex.org/I60134161"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5035394108"],"corresponding_institution_ids":["https://openalex.org/I207014233","https://openalex.org/I60134161"],"apc_list":null,"apc_paid":null,"fwci":1.4905,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.81749821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"64","issue":"14","first_page":"5712","last_page":"5724"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11584","display_name":"Biochemical Analysis and Sensing Techniques","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5585581660270691},{"id":"https://openalex.org/keywords/action","display_name":"Action (physics)","score":0.5440891981124878},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4042205810546875},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32440218329429626},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07387933135032654}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5585581660270691},{"id":"https://openalex.org/C2780791683","wikidata":"https://www.wikidata.org/wiki/Q846785","display_name":"Action (physics)","level":2,"score":0.5440891981124878},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4042205810546875},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32440218329429626},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07387933135032654},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005502","descriptor_name":"Food","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005502","descriptor_name":"Food","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005502","descriptor_name":"Food","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c00061","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c00061","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38950938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38950938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G3516496435","display_name":null,"funder_award_id":"20H05797","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G789622214","display_name":null,"funder_award_id":"21H04915","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1574831018","https://openalex.org/W1877143754","https://openalex.org/W1962181495","https://openalex.org/W1965854886","https://openalex.org/W1969269809","https://openalex.org/W1976484299","https://openalex.org/W1976726370","https://openalex.org/W1980542853","https://openalex.org/W1995650022","https://openalex.org/W2012441579","https://openalex.org/W2018544685","https://openalex.org/W2030342799","https://openalex.org/W2034537627","https://openalex.org/W2056646847","https://openalex.org/W2058338909","https://openalex.org/W2076654506","https://openalex.org/W2096541451","https://openalex.org/W2108069034","https://openalex.org/W2111078532","https://openalex.org/W2115086145","https://openalex.org/W2119516769","https://openalex.org/W2131042694","https://openalex.org/W2152349458","https://openalex.org/W2152454589","https://openalex.org/W2159675211","https://openalex.org/W2165674132","https://openalex.org/W2170146596","https://openalex.org/W2270068307","https://openalex.org/W2604480729","https://openalex.org/W2625441538","https://openalex.org/W2734270485","https://openalex.org/W2751493662","https://openalex.org/W2760167862","https://openalex.org/W2802617006","https://openalex.org/W2843861620","https://openalex.org/W2889965829","https://openalex.org/W2898868646","https://openalex.org/W2913979419","https://openalex.org/W2926006385","https://openalex.org/W3010510082","https://openalex.org/W3027691067","https://openalex.org/W3043278204","https://openalex.org/W3092404179","https://openalex.org/W3138509707","https://openalex.org/W3142987289","https://openalex.org/W3183412652","https://openalex.org/W4237142329","https://openalex.org/W4281960442","https://openalex.org/W4290643769"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Foods":[0],"possess":[1],"a":[2],"range":[3],"of":[4,33,46,89],"unexplored":[5],"functionalities;":[6],"however,":[7],"fully":[8],"identifying":[9],"these":[10,70],"functions":[11,114],"through":[12,43],"empirical":[13],"means":[14],"presents":[15],"significant":[16],"challenges.":[17],"In":[18],"this":[19,99],"study,":[20],"we":[21,61],"have":[22],"proposed":[23,73,119],"an":[24,86],"<i>in":[25],"silico</i>":[26],"approach":[27,100],"to":[28,85],"comprehensively":[29],"predict":[30],"the":[31,44,65],"functionalities":[32,92],"foods,":[34],"encompassing":[35],"even":[36],"processed":[37],"foods.":[38],"This":[39],"prediction":[40],"is":[41],"accomplished":[42],"utilization":[45],"machine":[47],"learning":[48],"on":[49,110],"biomedical":[50],"big":[51],"data.":[52],"Our":[53,118],"focus":[54],"revolves":[55],"around":[56],"disease-related":[57,116],"protein":[58],"pathways,":[59],"wherein":[60],"statistically":[62],"evaluate":[63],"how":[64],"constituent":[66],"compounds":[67],"collaboratively":[68],"regulate":[69],"pathways.":[71,117],"The":[72],"method":[74,120],"has":[75],"been":[76],"employed":[77],"across":[78],"876":[79],"foods":[80],"and":[81,93],"83":[82],"diseases,":[83],"leading":[84],"extensive":[87],"revelation":[88],"both":[90],"food":[91,102,113],"their":[94],"underlying":[95],"operational":[96],"mechanisms.":[97],"Additionally,":[98],"identifies":[101],"combinations":[103],"that":[104],"potentially":[105],"affect":[106],"molecular":[107],"pathways":[108],"based":[109],"interrelationships":[111],"between":[112],"within":[115],"holds":[121],"potential":[122],"for":[123],"advancing":[124],"preventive":[125],"healthcare.":[126]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4}],"updated_date":"2026-02-27T16:54:17.756197","created_date":"2025-10-10T00:00:00"}
