{"id":"https://openalex.org/W4393190078","doi":"https://doi.org/10.1021/acs.jcim.3c02013","title":"DeepKa Web Server: High-Throughput Protein p<i>K</i><sub>a</sub> Prediction","display_name":"DeepKa Web Server: High-Throughput Protein p<i>K</i><sub>a</sub> Prediction","publication_year":2024,"publication_date":"2024-03-26","ids":{"openalex":"https://openalex.org/W4393190078","doi":"https://doi.org/10.1021/acs.jcim.3c02013","pmid":"https://pubmed.ncbi.nlm.nih.gov/38530291"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c02013","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c02013","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076500831","display_name":"Zhitao Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I161346416","display_name":"Jimei University","ror":"https://ror.org/03hknyb50","country_code":"CN","type":"education","lineage":["https://openalex.org/I161346416"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhitao Cai","raw_affiliation_strings":["College of Computer Engineering, Jimei University, Xiamen 361021, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering, Jimei University, Xiamen 361021, China","institution_ids":["https://openalex.org/I161346416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014860072","display_name":"Hao Peng","orcid":"https://orcid.org/0000-0003-1915-6104"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Peng","raw_affiliation_strings":["National Pilot School of Software, Yunnan University, Kunming 650504, China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University, Kunming 650504, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102696734","display_name":"Shuo Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I161346416","display_name":"Jimei University","ror":"https://ror.org/03hknyb50","country_code":"CN","type":"education","lineage":["https://openalex.org/I161346416"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuo Sun","raw_affiliation_strings":["College of Computer Engineering, Jimei University, Xiamen 361021, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering, Jimei University, Xiamen 361021, China","institution_ids":["https://openalex.org/I161346416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069834022","display_name":"Jiahao He","orcid":"https://orcid.org/0009-0006-6263-2144"},"institutions":[{"id":"https://openalex.org/I161346416","display_name":"Jimei University","ror":"https://ror.org/03hknyb50","country_code":"CN","type":"education","lineage":["https://openalex.org/I161346416"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahao He","raw_affiliation_strings":["College of Computer Engineering, Jimei University, Xiamen 361021, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering, Jimei University, Xiamen 361021, China","institution_ids":["https://openalex.org/I161346416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055733769","display_name":"Fangfang Luo","orcid":"https://orcid.org/0000-0002-0241-048X"},"institutions":[{"id":"https://openalex.org/I161346416","display_name":"Jimei University","ror":"https://ror.org/03hknyb50","country_code":"CN","type":"education","lineage":["https://openalex.org/I161346416"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangfang Luo","raw_affiliation_strings":["College of Computer Engineering, Jimei University, Xiamen 361021, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering, Jimei University, Xiamen 361021, China","institution_ids":["https://openalex.org/I161346416"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064599430","display_name":"Yandong Huang","orcid":"https://orcid.org/0000-0002-1452-6383"},"institutions":[{"id":"https://openalex.org/I161346416","display_name":"Jimei University","ror":"https://ror.org/03hknyb50","country_code":"CN","type":"education","lineage":["https://openalex.org/I161346416"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yandong Huang","raw_affiliation_strings":["College of Computer Engineering, Jimei University, Xiamen 361021, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering, Jimei University, Xiamen 361021, China","institution_ids":["https://openalex.org/I161346416"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5064599430"],"corresponding_institution_ids":["https://openalex.org/I161346416"],"apc_list":null,"apc_paid":null,"fwci":6.4443,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.97068333,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"64","issue":"8","first_page":"2933","last_page":"2940"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7810155153274536},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7619450092315674},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7336253523826599},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7062931060791016},{"id":"https://openalex.org/keywords/clickstream","display_name":"Clickstream","score":0.6103125810623169},{"id":"https://openalex.org/keywords/web-log-analysis-software","display_name":"Web log analysis software","score":0.5763871073722839},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5563974380493164},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.5175692439079285},{"id":"https://openalex.org/keywords/web-api","display_name":"Web API","score":0.5050621628761292},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.49008333683013916},{"id":"https://openalex.org/keywords/static-web-page","display_name":"Static web page","score":0.4772615134716034},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43502962589263916},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.415743887424469},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41424059867858887},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3415170907974243},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23194214701652527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1269214153289795}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7810155153274536},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7619450092315674},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7336253523826599},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7062931060791016},{"id":"https://openalex.org/C138744977","wikidata":"https://www.wikidata.org/wiki/Q5132438","display_name":"Clickstream","level":5,"score":0.6103125810623169},{"id":"https://openalex.org/C104352257","wikidata":"https://www.wikidata.org/wiki/Q1238961","display_name":"Web log analysis software","level":5,"score":0.5763871073722839},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5563974380493164},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.5175692439079285},{"id":"https://openalex.org/C127613066","wikidata":"https://www.wikidata.org/wiki/Q557770","display_name":"Web API","level":4,"score":0.5050621628761292},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.49008333683013916},{"id":"https://openalex.org/C173576120","wikidata":"https://www.wikidata.org/wiki/Q2641220","display_name":"Static web page","level":4,"score":0.4772615134716034},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43502962589263916},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.415743887424469},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41424059867858887},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3415170907974243},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23194214701652527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1269214153289795},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006863","descriptor_name":"Hydrogen-Ion Concentration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006863","descriptor_name":"Hydrogen-Ion Concentration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006863","descriptor_name":"Hydrogen-Ion Concentration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006863","descriptor_name":"Hydrogen-Ion Concentration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c02013","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c02013","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38530291","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38530291","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G2361285765","display_name":null,"funder_award_id":"3502Z20227205","funder_id":"https://openalex.org/F4320316884","funder_display_name":"Natural Science Foundation of Xiamen City"},{"id":"https://openalex.org/G2693405936","display_name":null,"funder_award_id":"2023J01329","funder_id":"https://openalex.org/F4320321878","funder_display_name":"Natural Science Foundation of Fujian Province"},{"id":"https://openalex.org/G4353214475","display_name":null,"funder_award_id":"11804114","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320316884","display_name":"Natural Science Foundation of Xiamen City","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321878","display_name":"Natural Science Foundation of Fujian Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1986934575","https://openalex.org/W2004145462","https://openalex.org/W2014042350","https://openalex.org/W2029667189","https://openalex.org/W2032187756","https://openalex.org/W2046102151","https://openalex.org/W2076790509","https://openalex.org/W2117458899","https://openalex.org/W2132629607","https://openalex.org/W2152317018","https://openalex.org/W2152997175","https://openalex.org/W2156212384","https://openalex.org/W2156777159","https://openalex.org/W2168240189","https://openalex.org/W2169678694","https://openalex.org/W2170711116","https://openalex.org/W2190363753","https://openalex.org/W2208231611","https://openalex.org/W2330799739","https://openalex.org/W2404280981","https://openalex.org/W2472763914","https://openalex.org/W2724806569","https://openalex.org/W2781821160","https://openalex.org/W2788212154","https://openalex.org/W2810398033","https://openalex.org/W2893189760","https://openalex.org/W2949223833","https://openalex.org/W3011701533","https://openalex.org/W3018223376","https://openalex.org/W3082580455","https://openalex.org/W3088854855","https://openalex.org/W3112388947","https://openalex.org/W3177828909","https://openalex.org/W4205794662","https://openalex.org/W4210487294","https://openalex.org/W4220811910","https://openalex.org/W4285589483","https://openalex.org/W4289653737","https://openalex.org/W4307313792","https://openalex.org/W4323543602","https://openalex.org/W4372257622","https://openalex.org/W4377011517","https://openalex.org/W4384663992","https://openalex.org/W4385623011","https://openalex.org/W4386777439"],"related_works":["https://openalex.org/W2120703707","https://openalex.org/W1979144454","https://openalex.org/W46003491","https://openalex.org/W2280263769","https://openalex.org/W3178775802","https://openalex.org/W2577661087","https://openalex.org/W3110987292","https://openalex.org/W2074126298","https://openalex.org/W2188860061","https://openalex.org/W1516201762"],"abstract_inverted_index":{"DeepKa":[0,116],"is":[1,52,117],"a":[2,15,33,37,42,48,56,96],"deep-learning-based":[3],"protein":[4,23,104],"p<i>K</i><sub>a</sub>":[5,24],"predictor":[6],"proposed":[7],"in":[8,64,90],"our":[9],"previous":[10],"work.":[11],"In":[12],"this":[13,93],"study,":[14],"web":[16,30,73,83,113],"server":[17,31,74,84,114],"was":[18],"developed":[19],"that":[20,108],"enables":[21],"online":[22],"prediction":[25],"driven":[26],"by":[27,71,78],"DeepKa.":[28],"The":[29,112],"provides":[32],"user-friendly":[34],"interface":[35],"where":[36],"single":[38],"step":[39],"of":[40,99,115],"entering":[41],"valid":[43],"PDB":[44,49],"code":[45],"or":[46],"uploading":[47],"format":[50],"file":[51],"required":[53],"to":[54,66],"submit":[55],"job.":[57],"Two":[58],"case":[59,91],"studies":[60],"have":[61],"been":[62],"attached":[63],"order":[65],"explain":[67],"how":[68],"p<i>K</i><sub>a</sub>'s":[69],"calculated":[70],"the":[72,82,101],"could":[75],"be":[76],"utilized":[77],"users.":[79],"Finally,":[80],"combining":[81],"with":[85],"post":[86],"processing":[87],"as":[88],"described":[89],"studies,":[92],"work":[94],"suggests":[95],"quick":[97],"workflow":[98],"investigating":[100],"relationship":[102],"between":[103],"structure":[105],"and":[106],"function":[107],"are":[109],"pH":[110],"dependent.":[111],"freely":[118],"available":[119],"at":[120],"http://www.computbiophys.com/DeepKa/main.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
