{"id":"https://openalex.org/W4399140962","doi":"https://doi.org/10.1021/acs.jcim.3c01835","title":"Benchmarking AlphaFold-Generated Structures of Chemokine\u2013Chemokine Receptor Complexes","display_name":"Benchmarking AlphaFold-Generated Structures of Chemokine\u2013Chemokine Receptor Complexes","publication_year":2024,"publication_date":"2024-05-29","ids":{"openalex":"https://openalex.org/W4399140962","doi":"https://doi.org/10.1021/acs.jcim.3c01835","pmid":"https://pubmed.ncbi.nlm.nih.gov/38809680"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c01835","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01835","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006919535","display_name":"Lauri Urvas","orcid":"https://orcid.org/0000-0002-3829-3529"},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lauri Urvas","raw_affiliation_strings":["Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083767559","display_name":"Luca Chiesa","orcid":"https://orcid.org/0000-0002-2114-8683"},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Luca Chiesa","raw_affiliation_strings":["Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077272199","display_name":"Guillaume Bret","orcid":"https://orcid.org/0000-0001-5434-0906"},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Bret","raw_affiliation_strings":["Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074291763","display_name":"C\u00e9lien Jacquemard","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9lien Jacquemard","raw_affiliation_strings":["Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005741666","display_name":"Esther Kellenberger","orcid":"https://orcid.org/0000-0002-9320-4840"},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Esther Kellenberger","raw_affiliation_strings":["Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Innovation Th\u00e9rapeutique, UMR 7200 CNRS, Universit\u00e9 de Strasbourg, 67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005741666"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I68947357"],"apc_list":null,"apc_paid":null,"fwci":2.4861,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.91239236,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"64","issue":"11","first_page":"4587","last_page":"4600"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemokine-receptor","display_name":"Chemokine receptor","score":0.6317673921585083},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6145516633987427},{"id":"https://openalex.org/keywords/c-c-chemokine-receptor-type-6","display_name":"C-C chemokine receptor type 6","score":0.4499356746673584},{"id":"https://openalex.org/keywords/chemokine","display_name":"Chemokine","score":0.43414008617401123},{"id":"https://openalex.org/keywords/cc-chemokine-receptors","display_name":"CC chemokine receptors","score":0.429233580827713},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3725772202014923},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35292452573776245},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.2598316967487335},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.1681889295578003},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06652647256851196}],"concepts":[{"id":"https://openalex.org/C12823836","wikidata":"https://www.wikidata.org/wiki/Q24720618","display_name":"Chemokine receptor","level":4,"score":0.6317673921585083},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6145516633987427},{"id":"https://openalex.org/C94205230","wikidata":"https://www.wikidata.org/wiki/Q5005868","display_name":"C-C chemokine receptor type 6","level":5,"score":0.4499356746673584},{"id":"https://openalex.org/C13373296","wikidata":"https://www.wikidata.org/wiki/Q421866","display_name":"Chemokine","level":3,"score":0.43414008617401123},{"id":"https://openalex.org/C128879288","wikidata":"https://www.wikidata.org/wiki/Q5009764","display_name":"CC chemokine receptors","level":5,"score":0.429233580827713},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3725772202014923},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35292452573776245},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.2598316967487335},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.1681889295578003},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06652647256851196},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018925","descriptor_name":"Chemokines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019707","descriptor_name":"Receptors, Chemokine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.3c01835","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01835","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38809680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38809680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:HAL:hal-04699541v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04699541","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2024, 64 (11), pp.4587-4600. &#x27E8;10.1021/acs.jcim.3c01835&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2184907896","display_name":null,"funder_award_id":"ANR-10-IDEX-0002","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2883645776","display_name":null,"funder_award_id":"ANR-20-SFRI-0012","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7633403473","display_name":null,"funder_award_id":"ANR-21-CE44-0040","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322147","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1619354717","https://openalex.org/W1833104430","https://openalex.org/W1922705469","https://openalex.org/W1964083898","https://openalex.org/W1988778953","https://openalex.org/W2002489008","https://openalex.org/W2019879894","https://openalex.org/W2021580832","https://openalex.org/W2029479572","https://openalex.org/W2087482734","https://openalex.org/W2128845370","https://openalex.org/W2136180730","https://openalex.org/W2508425869","https://openalex.org/W2517768455","https://openalex.org/W2587556779","https://openalex.org/W2617691667","https://openalex.org/W2713710610","https://openalex.org/W2797069917","https://openalex.org/W2805385738","https://openalex.org/W2955866354","https://openalex.org/W2979332239","https://openalex.org/W3001205381","https://openalex.org/W3016181183","https://openalex.org/W3022774054","https://openalex.org/W3035444582","https://openalex.org/W3038311311","https://openalex.org/W3110608978","https://openalex.org/W3172249076","https://openalex.org/W3177828909","https://openalex.org/W3181744232","https://openalex.org/W3187563093","https://openalex.org/W3202105508","https://openalex.org/W4200309699","https://openalex.org/W4206757674","https://openalex.org/W4214847177","https://openalex.org/W4220990251","https://openalex.org/W4229000770","https://openalex.org/W4230049581","https://openalex.org/W4280598523","https://openalex.org/W4281790889","https://openalex.org/W4283218951","https://openalex.org/W4283696625","https://openalex.org/W4285083066","https://openalex.org/W4292636432","https://openalex.org/W4297235560","https://openalex.org/W4309506674","https://openalex.org/W4309588718","https://openalex.org/W4321090885","https://openalex.org/W4377221235","https://openalex.org/W4382601731","https://openalex.org/W4383216409","https://openalex.org/W4385620526","https://openalex.org/W4386793933","https://openalex.org/W4388034457","https://openalex.org/W4388627063"],"related_works":["https://openalex.org/W2012387879","https://openalex.org/W2055180308","https://openalex.org/W1966010613","https://openalex.org/W2133169003","https://openalex.org/W1993565072","https://openalex.org/W1965708302","https://openalex.org/W1965019797","https://openalex.org/W1999949446","https://openalex.org/W2971995469","https://openalex.org/W1533175943"],"abstract_inverted_index":{"AlphaFold":[0],"and":[1,16,63,92,162],"AlphaFold-Multimer":[2,33,84],"have":[3],"become":[4],"two":[5],"essential":[6],"tools":[7],"for":[8,54],"the":[9,25,42,46,59,69,95,100,104,107,132,136,153],"modeling":[10],"of":[11,14,27,45,61,99,106,122,138,152],"unknown":[12],"structures":[13,30],"proteins":[15],"protein":[17],"complexes.":[18],"In":[19],"this":[20],"work,":[21],"we":[22,147],"extensively":[23],"benchmarked":[24],"quality":[26,44],"chemokine-chemokine":[28],"receptor":[29,109],"generated":[31,148],"by":[32],"against":[34],"experimentally":[35],"determined":[36],"structures.":[37],"Our":[38],"analysis":[39],"considered":[40],"both":[41],"global":[43],"model,":[47],"as":[48,50],"well":[49,144],"key":[51],"structural":[52],"features":[53],"chemokine":[55,89,116,123],"recognition.":[56],"To":[57],"study":[58],"effects":[60],"template":[62],"multiple":[64],"sequence":[65],"alignment":[66],"parameters":[67],"on":[68],"results,":[70],"a":[71,114,149],"new":[72],"prediction":[73,127],"pipeline":[74],"called":[75],"LIT-AlphaFold":[76],"(https://github.com/LIT-CCM-lab/LIT-AlphaFold)":[77],"was":[78],"developed,":[79],"allowing":[80],"extensive":[81],"input":[82],"customization.":[83],"correctly":[85],"predicted":[86],"differences":[87],"in":[88],"binding":[90,97,125],"orientation":[91,98],"accurately":[93],"reproduced":[94],"unique":[96],"CXCL12-ACKR3":[101],"complex.":[102],"Further,":[103],"predictions":[105],"full":[108],"N-terminus":[110,124],"provided":[111],"insights":[112],"into":[113],"putative":[115],"recognition":[117],"site":[118],"0.5.":[119],"The":[120],"accuracy":[121],"mode":[126],"varied":[128],"between":[129],"complexes,":[130],"but":[131],"confidence":[133],"score":[134],"permitted":[135],"distinguishing":[137],"residues":[139],"that":[140],"were":[141],"very":[142],"likely":[143],"positioned.":[145],"Finally,":[146],"high-confidence":[150],"model":[151],"unsolved":[154],"CXCL12-CXCR4":[155],"complex,":[156],"which":[157],"agreed":[158],"with":[159],"experimental":[160],"mutagenesis":[161],"cross-linking":[163],"data.":[164]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
