{"id":"https://openalex.org/W4391431291","doi":"https://doi.org/10.1021/acs.jcim.3c01774","title":"Real-World Molecular Out-Of-Distribution: Specification and Investigation","display_name":"Real-World Molecular Out-Of-Distribution: Specification and Investigation","publication_year":2024,"publication_date":"2024-02-01","ids":{"openalex":"https://openalex.org/W4391431291","doi":"https://doi.org/10.1021/acs.jcim.3c01774","pmid":"https://pubmed.ncbi.nlm.nih.gov/38300258"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c01774","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01774","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c01774","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c01774","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037753193","display_name":"Prudencio Tossou","orcid":null},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Prudencio Tossou","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Montr\u00e9al, Qu\u00e9bec G1 V 0A6, Canada","Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada"],"raw_orcid":"https://orcid.org/0000-0002-9841-9867","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Montr\u00e9al, Qu\u00e9bec G1 V 0A6, Canada","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092090018","display_name":"Cas Wognum","orcid":"https://orcid.org/0009-0006-2742-4817"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Cas Wognum","raw_affiliation_strings":["Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada"],"raw_orcid":"https://orcid.org/0009-0006-2742-4817","affiliations":[{"raw_affiliation_string":"Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071309080","display_name":"Michael Craig","orcid":"https://orcid.org/0000-0003-3721-518X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Craig","raw_affiliation_strings":["Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086305312","display_name":"Hadrien Mary","orcid":"https://orcid.org/0000-0001-8199-5932"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hadrien Mary","raw_affiliation_strings":["Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012750505","display_name":"Emmanuel Noutahi","orcid":"https://orcid.org/0000-0001-5216-9703"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emmanuel Noutahi","raw_affiliation_strings":["Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Valence Labs, Montr\u00e9al, Qu\u00e9bec H2S3G9, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5037753193","https://openalex.org/A5092090018"],"corresponding_institution_ids":["https://openalex.org/I43406934"],"apc_list":null,"apc_paid":null,"fwci":10.1736,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.98652999,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"64","issue":"3","first_page":"697","last_page":"711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7535504102706909},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7024162411689758},{"id":"https://openalex.org/keywords/calibration","display_name":"Calibration","score":0.69463050365448},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6905878186225891},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.6785556077957153},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.6133116483688354},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.582991898059845},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5209816098213196},{"id":"https://openalex.org/keywords/covariate","display_name":"Covariate","score":0.4718582332134247},{"id":"https://openalex.org/keywords/mood","display_name":"Mood","score":0.4690549671649933},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.429370254278183},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39246031641960144},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3912387490272522},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18794670701026917},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14653724431991577},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.11424347758293152},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.07745510339736938}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7535504102706909},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7024162411689758},{"id":"https://openalex.org/C165838908","wikidata":"https://www.wikidata.org/wiki/Q736777","display_name":"Calibration","level":2,"score":0.69463050365448},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6905878186225891},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.6785556077957153},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.6133116483688354},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.582991898059845},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5209816098213196},{"id":"https://openalex.org/C119043178","wikidata":"https://www.wikidata.org/wiki/Q320723","display_name":"Covariate","level":2,"score":0.4718582332134247},{"id":"https://openalex.org/C2780733359","wikidata":"https://www.wikidata.org/wiki/Q331769","display_name":"Mood","level":2,"score":0.4690549671649933},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.429370254278183},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39246031641960144},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3912387490272522},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18794670701026917},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14653724431991577},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.11424347758293152},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.07745510339736938},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.3c01774","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01774","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c01774","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38300258","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38300258","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10865358","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10865358","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10865358/pdf/ci3c01774.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.3c01774","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01774","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c01774","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G5105770345","display_name":null,"funder_award_id":"FR70292","funder_id":"https://openalex.org/F4320322675","funder_display_name":"Mitacs"}],"funders":[{"id":"https://openalex.org/F4320322675","display_name":"Mitacs","ror":"https://ror.org/00cjrc276"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391431291.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1502922572","https://openalex.org/W1540105270","https://openalex.org/W1980175026","https://openalex.org/W1988037271","https://openalex.org/W2019678805","https://openalex.org/W2040651998","https://openalex.org/W2068167378","https://openalex.org/W2096705340","https://openalex.org/W2108458189","https://openalex.org/W2140389641","https://openalex.org/W2146950091","https://openalex.org/W2200017991","https://openalex.org/W2220807183","https://openalex.org/W2234529989","https://openalex.org/W2305293558","https://openalex.org/W2481808473","https://openalex.org/W2561613083","https://openalex.org/W2594183968","https://openalex.org/W2785813126","https://openalex.org/W2790808809","https://openalex.org/W2886900083","https://openalex.org/W2900090807","https://openalex.org/W2911964244","https://openalex.org/W2949676527","https://openalex.org/W2964288524","https://openalex.org/W2966357564","https://openalex.org/W2992752586","https://openalex.org/W3092609815","https://openalex.org/W3094686696","https://openalex.org/W3102400420","https://openalex.org/W3200120268","https://openalex.org/W4210852924","https://openalex.org/W4211216582","https://openalex.org/W4309793942","https://openalex.org/W4367727879","https://openalex.org/W4376131959","https://openalex.org/W4387874094"],"related_works":["https://openalex.org/W2770234245","https://openalex.org/W2985746494","https://openalex.org/W4206042385","https://openalex.org/W96612179","https://openalex.org/W2511384863","https://openalex.org/W2096089271","https://openalex.org/W2923628599","https://openalex.org/W2014100433","https://openalex.org/W2051519658","https://openalex.org/W4229499248"],"abstract_inverted_index":{"High":[0],"Resolution":[1],"Image":[2],"Download":[3],"MS":[4],"PowerPoint":[5],"Slide":[6],"This":[7,77,143],"study":[8,144],"presents":[9],"a":[10,30,82,100],"rigorous":[11],"framework":[12],"for":[13],"investigating":[14],"molecular":[15,162],"out-of-distribution":[16],"(MOOD)":[17],"generalization":[18],"in":[19,161],"drug":[20],"discovery.":[21],"The":[22],"concept":[23],"of":[24,49,109],"MOOD":[25,119],"is":[26,103],"first":[27],"clarified":[28],"through":[29],"problem":[31],"specification":[32],"that":[33,58,85,126],"demonstrates":[34],"how":[35],"the":[36,47,53,89,92,107],"covariate":[37],"shifts":[38,60],"encountered":[39],"during":[40],"real-world":[41],"deployment":[42,93],"can":[43,61],"be":[44],"characterized":[45],"by":[46,66,73,148],"distribution":[48],"sample":[50],"distances":[51],"to":[52,64,68,75,80,87,105,137,156],"training":[54],"set.":[55],"We":[56,124],"find":[57,125],"these":[59],"cause":[62],"performance":[63,120,139],"drop":[65],"up":[67,74],"60%":[69],"and":[70,94,114,121,129,140,151],"uncertainty":[71,122,133,141],"calibration":[72],"40%.":[76],"leads":[78],"us":[79],"propose":[81],"splitting":[83],"protocol":[84],"aims":[86],"close":[88],"gap":[90],"between":[91],"testing.":[95],"Then,":[96],"using":[97],"this":[98],"protocol,":[99],"thorough":[101],"investigation":[102],"conducted":[104],"assess":[106],"impact":[108],"model":[110,112],"design,":[111],"selection,":[113],"data":[115],"set":[116],"characteristics":[117],"on":[118],"calibration.":[123,142],"appropriate":[127],"representations":[128],"algorithms":[130],"with":[131],"built-in":[132],"estimation":[134],"are":[135],"crucial":[136],"improving":[138],"sets":[145],"itself":[146],"apart":[147],"its":[149],"exhaustiveness":[150],"opens":[152],"an":[153],"exciting":[154],"avenue":[155],"benchmark":[157],"meaningful":[158],"algorithmic":[159],"progress":[160],"scoring.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-10T00:00:00"}
