{"id":"https://openalex.org/W4389900027","doi":"https://doi.org/10.1021/acs.jcim.3c01573","title":"Redocking the PDB","display_name":"Redocking the PDB","publication_year":2023,"publication_date":"2023-12-18","ids":{"openalex":"https://openalex.org/W4389900027","doi":"https://doi.org/10.1021/acs.jcim.3c01573","pmid":"https://pubmed.ncbi.nlm.nih.gov/38108627"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c01573","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01573","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048360660","display_name":"Florian Flachsenberg","orcid":"https://orcid.org/0000-0001-7051-8719"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Flachsenberg","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7051-8719","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052764114","display_name":"Christiane Ehrt","orcid":"https://orcid.org/0000-0003-1428-0042"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christiane Ehrt","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1428-0042","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045638100","display_name":"Torben Gutermuth","orcid":"https://orcid.org/0000-0002-9304-8251"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Torben Gutermuth","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9304-8251","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083205378","display_name":"Matthias Rarey","orcid":"https://orcid.org/0000-0002-9553-6531"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Matthias Rarey","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9553-6531","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics, Bundesstra\u00dfe 43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083205378"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":null,"apc_paid":null,"fwci":5.9658,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.97002298,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"64","issue":"1","first_page":"219","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.6761372685432434},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6714938879013062},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6655018329620361},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6641830205917358},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.5489363074302673},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5432360172271729},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5117754340171814},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.49937009811401367},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.318228542804718},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.2975989580154419},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24322670698165894},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22097206115722656},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2068937122821808},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19360032677650452},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.10397067666053772},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.06974205374717712},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0637660026550293}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.6761372685432434},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6714938879013062},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6655018329620361},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6641830205917358},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.5489363074302673},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5432360172271729},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5117754340171814},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.49937009811401367},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.318228542804718},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2975989580154419},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24322670698165894},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22097206115722656},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2068937122821808},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19360032677650452},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.10397067666053772},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.06974205374717712},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0637660026550293},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c01573","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01573","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38108627","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38108627","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":146,"referenced_works":["https://openalex.org/W1484101819","https://openalex.org/W1507985183","https://openalex.org/W1592950931","https://openalex.org/W1835740130","https://openalex.org/W1968319881","https://openalex.org/W1970799005","https://openalex.org/W1975147762","https://openalex.org/W1975570414","https://openalex.org/W1977909079","https://openalex.org/W1980374511","https://openalex.org/W1981064967","https://openalex.org/W1982885147","https://openalex.org/W1983194490","https://openalex.org/W1985588649","https://openalex.org/W1986476355","https://openalex.org/W1986568494","https://openalex.org/W1988437166","https://openalex.org/W1988744515","https://openalex.org/W1992786240","https://openalex.org/W1994052145","https://openalex.org/W1994153527","https://openalex.org/W1998000033","https://openalex.org/W2000061529","https://openalex.org/W2001191780","https://openalex.org/W2005136695","https://openalex.org/W2005655785","https://openalex.org/W2010099233","https://openalex.org/W2011301426","https://openalex.org/W2018989832","https://openalex.org/W2020429677","https://openalex.org/W2029087609","https://openalex.org/W2030686695","https://openalex.org/W2031168104","https://openalex.org/W2038210983","https://openalex.org/W2039127550","https://openalex.org/W2042572511","https://openalex.org/W2043382734","https://openalex.org/W2044444984","https://openalex.org/W2050456292","https://openalex.org/W2052030759","https://openalex.org/W2056258481","https://openalex.org/W2056641273","https://openalex.org/W2059457452","https://openalex.org/W2059607243","https://openalex.org/W2062187228","https://openalex.org/W2063535987","https://openalex.org/W2065283382","https://openalex.org/W2065929501","https://openalex.org/W2066273100","https://openalex.org/W2066497260","https://openalex.org/W2068769920","https://openalex.org/W2072323125","https://openalex.org/W2074978479","https://openalex.org/W2076419401","https://openalex.org/W2078409719","https://openalex.org/W2079159737","https://openalex.org/W2100598991","https://openalex.org/W2103111465","https://openalex.org/W2105668062","https://openalex.org/W2106383417","https://openalex.org/W2110625366","https://openalex.org/W2114162221","https://openalex.org/W2114363966","https://openalex.org/W2114779636","https://openalex.org/W2115339329","https://openalex.org/W2117458899","https://openalex.org/W2118512515","https://openalex.org/W2121237359","https://openalex.org/W2123325078","https://openalex.org/W2124074156","https://openalex.org/W2128332459","https://openalex.org/W2129153475","https://openalex.org/W2130479394","https://openalex.org/W2131639373","https://openalex.org/W2134967712","https://openalex.org/W2158534713","https://openalex.org/W2165526004","https://openalex.org/W2167901867","https://openalex.org/W2169678694","https://openalex.org/W2170088433","https://openalex.org/W2171074980","https://openalex.org/W2238707319","https://openalex.org/W2256040435","https://openalex.org/W2334483166","https://openalex.org/W2342249984","https://openalex.org/W2394923207","https://openalex.org/W2398478519","https://openalex.org/W2527541313","https://openalex.org/W2578119541","https://openalex.org/W2605573491","https://openalex.org/W2610550630","https://openalex.org/W2734356283","https://openalex.org/W2763443264","https://openalex.org/W2768092025","https://openalex.org/W2774738748","https://openalex.org/W2887475976","https://openalex.org/W2895933337","https://openalex.org/W2898391595","https://openalex.org/W2898583857","https://openalex.org/W2902435351","https://openalex.org/W2902812092","https://openalex.org/W2910318997","https://openalex.org/W2911404893","https://openalex.org/W2911847761","https://openalex.org/W2918239264","https://openalex.org/W2943893168","https://openalex.org/W2969945877","https://openalex.org/W2979087151","https://openalex.org/W2981262688","https://openalex.org/W2982977147","https://openalex.org/W2985816842","https://openalex.org/W2991918053","https://openalex.org/W3002363522","https://openalex.org/W3004429471","https://openalex.org/W3010016408","https://openalex.org/W3015572666","https://openalex.org/W3016296419","https://openalex.org/W3027975282","https://openalex.org/W3081182275","https://openalex.org/W3083406432","https://openalex.org/W3107636879","https://openalex.org/W3126031592","https://openalex.org/W3131528123","https://openalex.org/W3131598977","https://openalex.org/W3150635270","https://openalex.org/W3158475977","https://openalex.org/W3168430821","https://openalex.org/W3168436232","https://openalex.org/W3199633702","https://openalex.org/W3208515103","https://openalex.org/W3212543990","https://openalex.org/W4211196614","https://openalex.org/W4221147818","https://openalex.org/W4225289163","https://openalex.org/W4239761798","https://openalex.org/W4281701642","https://openalex.org/W4302307901","https://openalex.org/W4306403149","https://openalex.org/W4324129241","https://openalex.org/W4362601182","https://openalex.org/W4362633613","https://openalex.org/W4367669413","https://openalex.org/W4393896203","https://openalex.org/W6893983555","https://openalex.org/W6931685419","https://openalex.org/W6969646697"],"related_works":["https://openalex.org/W2089188080","https://openalex.org/W2040220181","https://openalex.org/W2109587698","https://openalex.org/W2164660648","https://openalex.org/W4380078311","https://openalex.org/W4323365648","https://openalex.org/W3200294295","https://openalex.org/W2138402460","https://openalex.org/W2336040088","https://openalex.org/W4245963358"],"abstract_inverted_index":{"Molecular":[0],"docking":[1,53,69,85,115],"is":[2,56],"a":[3,19,27,30,34,103,131],"standard":[4],"technique":[5],"in":[6,22],"structure-based":[7],"drug":[8],"design":[9],"(SBDD).":[10],"It":[11],"aims":[12],"to":[13,58,91,98,141,160,169],"predict":[14],"the":[15,23,49,67,76,95,107,142,146,152,161,165,172,176,183],"3D":[16],"structure":[17,157],"of":[18,26,94,106,110,136,151],"small":[20],"molecule":[21],"binding":[24,72],"site":[25],"receptor":[28],"(often":[29],"protein).":[31],"Despite":[32],"being":[33],"common":[35],"technique,":[36],"it":[37],"often":[38],"necessitates":[39],"multiple":[40],"tools":[41],"and":[42,52,60,79,101,114,182],"involves":[43],"manual":[44,99],"steps.":[45],"Here,":[46],"we":[47,89],"present":[48],"JAMDA":[50,68,112,128,177,181],"preprocessing":[51,113,178],"workflow":[54,70,116,129],"that":[55],"easy":[57],"use":[59],"allows":[61],"fully":[62],"automated":[63],"docking.":[64],"We":[65],"evaluate":[66],"on":[71,145,190],"sites":[73],"extracted":[74],"from":[75,175],"complete":[77],"PDB":[78,119],"derive":[80],"key":[81],"factors":[82],"determining":[83],"JAMDA's":[84],"performance.":[86],"With":[87],"that,":[88],"try":[90],"remove":[92],"most":[93,138],"bias":[96],"due":[97],"intervention":[100],"provide":[102],"realistic":[104],"estimate":[105],"redocking":[108],"performance":[109],"our":[111,127],"for":[117,149],"any":[118],"structure.":[120],"On":[121],"this":[122,191],"large":[123],"PDBScan22":[124,162],"data":[125,163,193,197],"set,":[126,164],"finds":[130],"pose":[132],"with":[133],"an":[134],"RMSD":[135],"at":[137],"2":[139],"\u00c5":[140],"crystal":[143],"ligand":[144],"top":[147],"rank":[148],"30.1%":[150],"structures.":[153],"When":[154],"applying":[155],"objective":[156],"quality":[158],"filters":[159],"success":[166],"rate":[167],"increases":[168],"61.8%.":[170],"Given":[171],"prepared":[173],"structures":[174],"pipeline,":[179],"both":[180],"widely":[184],"used":[185],"AutoDock":[186],"Vina":[187],"perform":[188],"comparably":[189],"filtered":[192],"set":[194],"(the":[195],"PDBScan22-HQ":[196],"set).":[198]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":11}],"updated_date":"2026-06-10T14:10:52.464848","created_date":"2023-12-19T00:00:00"}
