{"id":"https://openalex.org/W4391163796","doi":"https://doi.org/10.1021/acs.jcim.3c01562","title":"AutoMolDesigner for Antibiotic Discovery: An AI-Based Open-Source Software for Automated Design of Small-Molecule Antibiotics","display_name":"AutoMolDesigner for Antibiotic Discovery: An AI-Based Open-Source Software for Automated Design of Small-Molecule Antibiotics","publication_year":2024,"publication_date":"2024-01-24","ids":{"openalex":"https://openalex.org/W4391163796","doi":"https://doi.org/10.1021/acs.jcim.3c01562","pmid":"https://pubmed.ncbi.nlm.nih.gov/38265916"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c01562","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01562","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086903789","display_name":"Tao Shen","orcid":"https://orcid.org/0009-0005-7086-8803"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Shen","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040799971","display_name":"Jiale Guo","orcid":"https://orcid.org/0009-0002-6580-2584"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiale Guo","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006084099","display_name":"Zunsheng Han","orcid":"https://orcid.org/0009-0001-0852-3135"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zunsheng Han","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113655129","display_name":"Gao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gao Zhang","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067039459","display_name":"Qingxin Liu","orcid":"https://orcid.org/0000-0002-3081-5185"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingxin Liu","raw_affiliation_strings":["School of Pharmacy, Jiangsu Ocean University, Lianyungang, Jiangsu 222005, China","State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Pharmacy, Jiangsu Ocean University, Lianyungang, Jiangsu 222005, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018730551","display_name":"Xinxin Si","orcid":"https://orcid.org/0000-0003-0393-4223"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinxin Si","raw_affiliation_strings":["School of Pharmacy, Jiangsu Ocean University, Lianyungang, Jiangsu 222005, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Pharmacy, Jiangsu Ocean University, Lianyungang, Jiangsu 222005, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100408281","display_name":"Dongmei Wang","orcid":"https://orcid.org/0000-0002-6930-0066"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dongmei Wang","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003820281","display_name":"Song Wu","orcid":"https://orcid.org/0000-0001-7876-7007"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Song Wu","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040382093","display_name":"Jie Xia","orcid":"https://orcid.org/0000-0002-9567-3763"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Xia","raw_affiliation_strings":["State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China"],"raw_orcid":"https://orcid.org/0000-0002-9567-3763","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003820281","https://openalex.org/A5040382093","https://openalex.org/A5100408281"],"corresponding_institution_ids":["https://openalex.org/I200296433"],"apc_list":null,"apc_paid":null,"fwci":6.0526,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.96856163,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"64","issue":"3","first_page":"575","last_page":"583"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7359681129455566},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6187876462936401},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5728219747543335},{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.5328156352043152},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.46487951278686523},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4310779869556427},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4104834794998169},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3783698081970215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3271292448043823},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2186775505542755},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10695680975914001}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7359681129455566},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6187876462936401},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5728219747543335},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.5328156352043152},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.46487951278686523},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4310779869556427},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4104834794998169},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3783698081970215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3271292448043823},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2186775505542755},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10695680975914001},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c01562","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c01562","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:38265916","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38265916","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4421132523","display_name":null,"funder_award_id":"2021-I2M-1-069","funder_id":"https://openalex.org/F4320336738","funder_display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine"},{"id":"https://openalex.org/G5627376497","display_name":null,"funder_award_id":"2018ZX09711001-012-003","funder_id":"https://openalex.org/F4320335960","funder_display_name":"National Major Science and Technology Projects of China"},{"id":"https://openalex.org/G8070307874","display_name":null,"funder_award_id":"G2021194015L","funder_id":"https://openalex.org/F4320336644","funder_display_name":"High-end Foreign Experts Recruitment Plan of China"}],"funders":[{"id":"https://openalex.org/F4320335960","display_name":"National Major Science and Technology Projects of China","ror":null},{"id":"https://openalex.org/F4320336644","display_name":"High-end Foreign Experts Recruitment Plan of China","ror":null},{"id":"https://openalex.org/F4320336738","display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1964031294","https://openalex.org/W1988037271","https://openalex.org/W2039219696","https://openalex.org/W2066897136","https://openalex.org/W2068685580","https://openalex.org/W2083339697","https://openalex.org/W2108797565","https://openalex.org/W2127999800","https://openalex.org/W2128245586","https://openalex.org/W2135314048","https://openalex.org/W2160592148","https://openalex.org/W2565125422","https://openalex.org/W2578240541","https://openalex.org/W2604038589","https://openalex.org/W2613613983","https://openalex.org/W2620635074","https://openalex.org/W2900090807","https://openalex.org/W2920724574","https://openalex.org/W2958663082","https://openalex.org/W2966357564","https://openalex.org/W2996698081","https://openalex.org/W3007309629","https://openalex.org/W3011286504","https://openalex.org/W3024693033","https://openalex.org/W3030677265","https://openalex.org/W3030978062","https://openalex.org/W3081615418","https://openalex.org/W3097280976","https://openalex.org/W3114264111","https://openalex.org/W3116865743","https://openalex.org/W3120397982","https://openalex.org/W3133319049","https://openalex.org/W3197063311","https://openalex.org/W3201230437","https://openalex.org/W3209056694","https://openalex.org/W4232520928","https://openalex.org/W4239934460","https://openalex.org/W4255231775","https://openalex.org/W4281383202","https://openalex.org/W4291020097","https://openalex.org/W4291396330","https://openalex.org/W4294719209","https://openalex.org/W4304759443","https://openalex.org/W4309047034","https://openalex.org/W4313489214","https://openalex.org/W4313703391","https://openalex.org/W4318912574","https://openalex.org/W4366779666","https://openalex.org/W4378212018"],"related_works":["https://openalex.org/W2351037592","https://openalex.org/W2351703320","https://openalex.org/W2102755799","https://openalex.org/W2380289422","https://openalex.org/W2015888618","https://openalex.org/W3149559504","https://openalex.org/W2360766689","https://openalex.org/W2361450924","https://openalex.org/W2899499199","https://openalex.org/W2022968056"],"abstract_inverted_index":{"Discovery":[0],"of":[1,10,22,105],"small-molecule":[2,44,60],"antibiotics":[3],"with":[4,124,136],"novel":[5],"chemotypes":[6],"serves":[7],"as":[8],"one":[9],"the":[11,103],"essential":[12],"strategies":[13],"to":[14,26,59,144],"address":[15,48],"antibiotic":[16,45,61,93],"resistance.":[17],"Although":[18],"a":[19,34,54,65,125],"considerable":[20],"number":[21],"computational":[23,55],"tools":[24,40],"committed":[25],"molecular":[27,74],"design":[28],"have":[29],"been":[30],"reported,":[31],"there":[32],"is":[33,64,98],"deficit":[35],"in":[36],"holistic":[37],"and":[38,76,86,95,118,151,160],"efficient":[39],"specifically":[41],"developed":[42],"for":[43,91,102,108,146],"discovery.":[46],"To":[47],"this":[49,121],"issue,":[50],"we":[51],"report":[52],"AutoMolDesigner,":[53],"modeling":[56],"software":[57,113,150],"dedicated":[58],"design.":[62,96],"It":[63,97],"generalized":[66],"framework":[67],"comprising":[68],"two":[69],"functional":[70],"modules,":[71],"i.e.,":[72],"generative-deep-learning-enabled":[73],"generation":[75],"automated":[77],"machine-learning-based":[78],"antibacterial":[79],"activity/property":[80],"prediction,":[81],"wherein":[82],"individually":[83],"trained":[84],"models":[85],"curated":[87],"datasets":[88],"are":[89,154],"out-of-the-box":[90],"whole-cell-based":[92],"screening":[94],"open-source,":[99],"thus":[100],"allowing":[101],"incorporation":[104],"new":[106],"features":[107],"flexible":[109],"use.":[110],"Unlike":[111],"most":[112],"programs":[114],"based":[115],"on":[116,133],"Linux":[117],"command":[119],"lines,":[120],"application":[122],"equipped":[123],"Qt-based":[126],"graphical":[127],"user":[128],"interface":[129],"can":[130],"be":[131],"run":[132],"personal":[134],"computers":[135],"multiple":[137],"operating":[138],"systems,":[139],"making":[140],"it":[141],"much":[142],"easier":[143],"use":[145],"experimental":[147],"scientists.":[148],"The":[149],"related":[152],"materials":[153],"freely":[155],"available":[156],"at":[157],"GitHub":[158],"(https://github.com/taoshen99/AutoMolDesigner)":[159],"Zenodo":[161],"(https://zenodo.org/record/10097899).":[162]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":4}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-10T00:00:00"}
