{"id":"https://openalex.org/W4385169375","doi":"https://doi.org/10.1021/acs.jcim.3c00704","title":"How E-, L-, and P-Selectins Bind to sLe<sup>x</sup> and PSGL-1: A Quantification of Critical Residue Interactions","display_name":"How E-, L-, and P-Selectins Bind to sLe<sup>x</sup> and PSGL-1: A Quantification of Critical Residue Interactions","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4385169375","doi":"https://doi.org/10.1021/acs.jcim.3c00704","pmid":"https://pubmed.ncbi.nlm.nih.gov/37486087"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00704","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00704","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085197389","display_name":"Vladim\u00edr Sl\u00e1dek","orcid":"https://orcid.org/0000-0001-5332-7558"},"institutions":[{"id":"https://openalex.org/I147747303","display_name":"Institute of Chemistry of the Slovak Academy of Sciences","ror":"https://ror.org/02te3c603","country_code":"SK","type":"facility","lineage":["https://openalex.org/I147747303","https://openalex.org/I207624831"]}],"countries":["SK"],"is_corresponding":true,"raw_author_name":"Vladimir Sladek","raw_affiliation_strings":["Institute of Chemistry, SAS, Dubravska cesta 9, 84538 Bratislava, Slovakia"],"raw_orcid":"https://orcid.org/0000-0001-5332-7558","affiliations":[{"raw_affiliation_string":"Institute of Chemistry, SAS, Dubravska cesta 9, 84538 Bratislava, Slovakia","institution_ids":["https://openalex.org/I147747303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043139384","display_name":"Pavel \u0160mak","orcid":"https://orcid.org/0000-0001-8610-5601"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Pavel \u0160mak","raw_affiliation_strings":["Department of Biochemistry, Faculty of Medicine, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Faculty of Medicine, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006856491","display_name":"Igor Tvaro\u0161ka","orcid":"https://orcid.org/0000-0003-2740-944X"},"institutions":[{"id":"https://openalex.org/I147747303","display_name":"Institute of Chemistry of the Slovak Academy of Sciences","ror":"https://ror.org/02te3c603","country_code":"SK","type":"facility","lineage":["https://openalex.org/I147747303","https://openalex.org/I207624831"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Igor Tvaro\u0161ka","raw_affiliation_strings":["Institute of Chemistry, SAS, Dubravska cesta 9, 84538 Bratislava, Slovakia"],"raw_orcid":"https://orcid.org/0000-0003-2740-944X","affiliations":[{"raw_affiliation_string":"Institute of Chemistry, SAS, Dubravska cesta 9, 84538 Bratislava, Slovakia","institution_ids":["https://openalex.org/I147747303"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5085197389"],"corresponding_institution_ids":["https://openalex.org/I147747303"],"apc_list":null,"apc_paid":null,"fwci":3.3872,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.92645751,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"63","issue":"17","first_page":"5604","last_page":"5618"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10831","display_name":"Cell Adhesion Molecules Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10831","display_name":"Cell Adhesion Molecules Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/selectin","display_name":"Selectin","score":0.8461191058158875},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.6108411550521851},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.4765779972076416},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.4466693699359894},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.4454032778739929},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4385806620121002},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4302205443382263},{"id":"https://openalex.org/keywords/plasma-protein-binding","display_name":"Plasma protein binding","score":0.42333370447158813},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.3898577392101288},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.25849029421806335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18705856800079346},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.16793814301490784},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.15013357996940613}],"concepts":[{"id":"https://openalex.org/C155619193","wikidata":"https://www.wikidata.org/wiki/Q415915","display_name":"Selectin","level":3,"score":0.8461191058158875},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6108411550521851},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.4765779972076416},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.4466693699359894},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.4454032778739929},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4385806620121002},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4302205443382263},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.42333370447158813},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.3898577392101288},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.25849029421806335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18705856800079346},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.16793814301490784},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.15013357996940613},{"id":"https://openalex.org/C84416704","wikidata":"https://www.wikidata.org/wiki/Q188666","display_name":"Adhesion","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000080506","descriptor_name":"Sialyl Lewis X Antigen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080506","descriptor_name":"Sialyl Lewis X Antigen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080506","descriptor_name":"Sialyl Lewis X Antigen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002448","descriptor_name":"Cell Adhesion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019007","descriptor_name":"P-Selectin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019007","descriptor_name":"P-Selectin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019007","descriptor_name":"P-Selectin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019087","descriptor_name":"Selectins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019087","descriptor_name":"Selectins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019087","descriptor_name":"Selectins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c00704","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00704","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:37486087","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37486087","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1748090691","display_name":null,"funder_award_id":"19-0376","funder_id":"https://openalex.org/F4320323251","funder_display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja"},{"id":"https://openalex.org/G4796053325","display_name":null,"funder_award_id":"20-0230","funder_id":"https://openalex.org/F4320323251","funder_display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja"},{"id":"https://openalex.org/G6444366975","display_name":"Integr\u00e1cia teoretick\u00fdch a experiment\u00e1lnych pr\u00edstupov pri rie\u0161en\u00ed modern\u00fdch v\u00fdziev molekul\u00e1rnej biol\u00f3gie.","funder_award_id":"2/0061/23","funder_id":"https://openalex.org/F4320323641","funder_display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV"}],"funders":[{"id":"https://openalex.org/F4320323251","display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja","ror":"https://ror.org/037nx0e70"},{"id":"https://openalex.org/F4320323641","display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV","ror":"https://ror.org/044gwpv05"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":109,"referenced_works":["https://openalex.org/W1516652978","https://openalex.org/W1641373107","https://openalex.org/W1894440327","https://openalex.org/W1900762885","https://openalex.org/W1914229765","https://openalex.org/W1955707222","https://openalex.org/W1966400780","https://openalex.org/W1969000446","https://openalex.org/W1974182660","https://openalex.org/W1976499671","https://openalex.org/W1978147073","https://openalex.org/W1983004361","https://openalex.org/W1988043125","https://openalex.org/W1989978944","https://openalex.org/W1995781008","https://openalex.org/W1997196395","https://openalex.org/W2002150668","https://openalex.org/W2003148857","https://openalex.org/W2004432012","https://openalex.org/W2014118668","https://openalex.org/W2024191848","https://openalex.org/W2031168104","https://openalex.org/W2033777798","https://openalex.org/W2035809865","https://openalex.org/W2044162092","https://openalex.org/W2044890797","https://openalex.org/W2044940178","https://openalex.org/W2046412723","https://openalex.org/W2047439123","https://openalex.org/W2051370579","https://openalex.org/W2052070468","https://openalex.org/W2055468986","https://openalex.org/W2058363175","https://openalex.org/W2060305425","https://openalex.org/W2060512529","https://openalex.org/W2061153055","https://openalex.org/W2066171365","https://openalex.org/W2069168579","https://openalex.org/W2069488734","https://openalex.org/W2070203126","https://openalex.org/W2076603801","https://openalex.org/W2088557890","https://openalex.org/W2089351320","https://openalex.org/W2094642658","https://openalex.org/W2096747776","https://openalex.org/W2098943363","https://openalex.org/W2101764813","https://openalex.org/W2103325328","https://openalex.org/W2105450226","https://openalex.org/W2107205644","https://openalex.org/W2109153347","https://openalex.org/W2112998064","https://openalex.org/W2117119768","https://openalex.org/W2118233996","https://openalex.org/W2118622794","https://openalex.org/W2131197116","https://openalex.org/W2140449516","https://openalex.org/W2145097136","https://openalex.org/W2145357132","https://openalex.org/W2149170824","https://openalex.org/W2155793158","https://openalex.org/W2159304854","https://openalex.org/W2301414454","https://openalex.org/W2310552526","https://openalex.org/W2327161550","https://openalex.org/W2328012862","https://openalex.org/W2335351410","https://openalex.org/W2404280981","https://openalex.org/W2508000949","https://openalex.org/W2558826010","https://openalex.org/W2565348719","https://openalex.org/W2581823978","https://openalex.org/W2591993163","https://openalex.org/W2687583174","https://openalex.org/W2784284174","https://openalex.org/W2791151548","https://openalex.org/W2903386340","https://openalex.org/W2946944651","https://openalex.org/W2966009035","https://openalex.org/W2971269126","https://openalex.org/W3000221405","https://openalex.org/W3017260797","https://openalex.org/W3036930405","https://openalex.org/W3042095571","https://openalex.org/W3084379630","https://openalex.org/W3087572087","https://openalex.org/W3099451774","https://openalex.org/W3128735479","https://openalex.org/W3138104304","https://openalex.org/W3148726265","https://openalex.org/W3158005934","https://openalex.org/W3183832028","https://openalex.org/W3186929172","https://openalex.org/W3187048209","https://openalex.org/W3194355023","https://openalex.org/W3198757943","https://openalex.org/W3206866461","https://openalex.org/W4200488948","https://openalex.org/W4206705069","https://openalex.org/W4220689455","https://openalex.org/W4233994049","https://openalex.org/W4247067116","https://openalex.org/W4282916790","https://openalex.org/W4297053268","https://openalex.org/W4300288344","https://openalex.org/W4307968718","https://openalex.org/W4308197800","https://openalex.org/W4312124256","https://openalex.org/W4377565353"],"related_works":["https://openalex.org/W42225299","https://openalex.org/W2943414817","https://openalex.org/W2197392606","https://openalex.org/W1605005150","https://openalex.org/W3184587995","https://openalex.org/W3092402433","https://openalex.org/W2716636539","https://openalex.org/W2902128418","https://openalex.org/W2385923153","https://openalex.org/W2511683653"],"abstract_inverted_index":{"Selectins":[0],"and":[1,25,32,62,84,135,142,161,171,194,223],"their":[2,30,64],"ability":[3],"to":[4,101,118,128,143,218,221],"interact":[5],"with":[6,104,204],"specific":[7],"ligands":[8],"are":[9],"a":[10,20,46,75,174,209],"cornerstone":[11],"in":[12,54,59,138,146,157,166,177,192,200,206,212],"cell":[13],"communication.":[14],"Over":[15],"the":[16,39,56,96,105,119,130,139,150,158,179,185,213,237,240],"last":[17],"three":[18,151],"decades,":[19],"considerable":[21],"wealth":[22],"of":[23,41,71,95,115,121,132,187,189,216,239],"experimental":[24,97],"molecular":[26,80,147],"modeling":[27],"insights":[28],"into":[29],"structure":[31],"modus":[33],"operandi":[34],"were":[35],"gathered.":[36],"Nonetheless,":[37],"explaining":[38],"role":[40,186],"individual":[42],"selectin":[43],"residues":[44,134,165,191],"on":[45,236],"quantitative":[47,113],"level":[48],"remained":[49],"elusive,":[50],"despite":[51],"its":[52],"importance":[53,131],"understanding":[55],"structure\u2013function":[57],"relationship":[58],"these":[60],"molecules":[61],"designing":[63],"inhibitors.":[65],"This":[66],"work":[67],"explores":[68],"essential":[69,232],"interactions":[70],"selectin\u2013ligand":[72],"binding,":[73],"employing":[74],"multiscale":[76],"approach":[77,91],"that":[78,155,196],"combines":[79],"dynamics,":[81],"quantum-chemical":[82],"calculations,":[83],"residue":[85,116],"interaction":[86],"network":[87],"models.":[88],"Such":[89],"an":[90,109,227],"successfully":[92],"reproduces":[93],"most":[94],"findings.":[98],"It":[99],"proves":[100],"be":[102],"helpful,":[103],"potential":[106],"for":[107,112],"becoming":[108],"established":[110],"tool":[111],"predictions":[114],"contribution":[117],"binding":[120],"biomolecular":[122],"complexes.":[123],"The":[124],"results":[125],"empower":[126],"us":[127],"quantify":[129],"particular":[133],"functional":[136],"groups":[137],"protein\u2013ligand":[140],"interface":[141],"pinpoint":[144],"differences":[145],"recognition":[148],"by":[149],"selectins.":[152],"We":[153,183,225],"show":[154],"mutations":[156],"E-,":[159],"L-,":[160],"P-selectins,":[162],"e.g.,":[163],"different":[164],"positions":[167],"46,":[168],"85,":[169],"97,":[170],"107,":[172],"present":[173],"crucial":[175],"difference":[176],"how":[178],"ligand":[180],"is":[181,208],"engaged.":[182],"assess":[184],"sulfation":[188],"tyrosine":[190],"PSGL-1":[193,219],"suggest":[195],"TyrSO":[197],"3":[198],"\u2013":[199],"position":[201],"51":[202],"interacting":[203],"Arg85":[205],"P-selectin":[207,217],"significant":[210],"factor":[211],"increased":[214],"affinity":[215],"compared":[220],"E-":[222],"L-selectins.":[224],"propose":[226],"original":[228],"pharmacophore":[229],"targeting":[230],"five":[231],"PSGL-binding":[233],"sites":[234],"based":[235],"analysis":[238],"selectin\u00b7\u00b7\u00b7PSGL-1":[241],"interactions.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-10T00:00:00"}
