{"id":"https://openalex.org/W4386019966","doi":"https://doi.org/10.1021/acs.jcim.3c00603","title":"Targeted Protein Degradation: Advances, Challenges, and Prospects for Computational Methods","display_name":"Targeted Protein Degradation: Advances, Challenges, and Prospects for Computational Methods","publication_year":2023,"publication_date":"2023-08-21","ids":{"openalex":"https://openalex.org/W4386019966","doi":"https://doi.org/10.1021/acs.jcim.3c00603","pmid":"https://pubmed.ncbi.nlm.nih.gov/37602861"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00603","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00603","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.3c00603","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044681385","display_name":"Barmak Mostofian","orcid":"https://orcid.org/0000-0003-0568-9866"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barmak Mostofian","raw_affiliation_strings":["OpenEye, Cadence Molecular Sciences, Boston, Massachusetts 02114 United States"],"affiliations":[{"raw_affiliation_string":"OpenEye, Cadence Molecular Sciences, Boston, Massachusetts 02114 United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079058147","display_name":"Holli\u2010Joi Martin","orcid":"https://orcid.org/0000-0002-9123-0439"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Holli-Joi Martin","raw_affiliation_strings":["Laboratory for Molecular Modeling, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, North Carolina 27599 United States"],"affiliations":[{"raw_affiliation_string":"Laboratory for Molecular Modeling, Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, North Carolina 27599 United States","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087154415","display_name":"Asghar M. Razavi","orcid":"https://orcid.org/0000-0003-4639-5856"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Asghar Razavi","raw_affiliation_strings":["ENKO Chem, Inc, Mystic, Connecticut 06355 United States"],"affiliations":[{"raw_affiliation_string":"ENKO Chem, Inc, Mystic, Connecticut 06355 United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018805663","display_name":"Shivam Patel","orcid":"https://orcid.org/0009-0000-0178-2073"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shivam Patel","raw_affiliation_strings":["Psivant Therapeutics, Boston, Massachusetts 02210 United States"],"affiliations":[{"raw_affiliation_string":"Psivant Therapeutics, Boston, Massachusetts 02210 United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004009215","display_name":"Bryce K. Allen","orcid":"https://orcid.org/0000-0002-0804-8127"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bryce Allen","raw_affiliation_strings":["Differentiated Therapeutics, San Diego, California 92056 United States"],"affiliations":[{"raw_affiliation_string":"Differentiated Therapeutics, San Diego, California 92056 United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087455853","display_name":"Woody Sherman","orcid":"https://orcid.org/0000-0001-9079-1376"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Woody Sherman","raw_affiliation_strings":["Psivant Therapeutics, Boston, Massachusetts 02210 United States"],"affiliations":[{"raw_affiliation_string":"Psivant Therapeutics, Boston, Massachusetts 02210 United States","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039906501","display_name":"Jes\u00fas A. Izaguirre","orcid":"https://orcid.org/0000-0002-4687-4884"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jesus A Izaguirre","raw_affiliation_strings":["Atommap Corporation, New York, New York 10013 United States","Differentiated Therapeutics, San Diego, California 92056 United States"],"affiliations":[{"raw_affiliation_string":"Atommap Corporation, New York, New York 10013 United States","institution_ids":[]},{"raw_affiliation_string":"Differentiated Therapeutics, San Diego, California 92056 United States","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039906501"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":9.2971,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.98543597,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"63","issue":"17","first_page":"5408","last_page":"5432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9706000089645386,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9358000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.6360827088356018},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.5914384126663208},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5856335163116455},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.5782888531684875},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5705147981643677},{"id":"https://openalex.org/keywords/ternary-complex","display_name":"Ternary complex","score":0.5416619777679443},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5368196964263916},{"id":"https://openalex.org/keywords/protein-degradation","display_name":"Protein degradation","score":0.4909811317920685},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.4876348078250885},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.4231802821159363},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.40722566843032837},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3763475716114044},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.3757525682449341},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2823776304721832},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2699074149131775},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23576360940933228},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.22250047326087952},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1280469000339508},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12618708610534668},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.11205035448074341},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08901792764663696}],"concepts":[{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.6360827088356018},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.5914384126663208},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5856335163116455},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.5782888531684875},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5705147981643677},{"id":"https://openalex.org/C86756495","wikidata":"https://www.wikidata.org/wiki/Q7702931","display_name":"Ternary complex","level":3,"score":0.5416619777679443},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5368196964263916},{"id":"https://openalex.org/C2992195973","wikidata":"https://www.wikidata.org/wiki/Q33123","display_name":"Protein degradation","level":2,"score":0.4909811317920685},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.4876348078250885},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.4231802821159363},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.40722566843032837},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3763475716114044},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3757525682449341},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2823776304721832},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2699074149131775},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23576360940933228},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.22250047326087952},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1280469000339508},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12618708610534668},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.11205035448074341},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08901792764663696},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010539","descriptor_name":"Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010539","descriptor_name":"Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010539","descriptor_name":"Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.3c00603","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00603","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:37602861","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37602861","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10498452","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10498452","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10498452/pdf/ci3c00603.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.3c00603","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00603","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":289,"referenced_works":["https://openalex.org/W585413800","https://openalex.org/W1488181101","https://openalex.org/W1513849811","https://openalex.org/W1536763098","https://openalex.org/W1567661465","https://openalex.org/W1673352269","https://openalex.org/W1917632116","https://openalex.org/W1968229731","https://openalex.org/W1968922152","https://openalex.org/W1969668210","https://openalex.org/W1970931711","https://openalex.org/W1973921769","https://openalex.org/W1975460230","https://openalex.org/W1978726512","https://openalex.org/W1980010067","https://openalex.org/W1984428215","https://openalex.org/W1984481443","https://openalex.org/W1985020303","https://openalex.org/W1986240377","https://openalex.org/W1988529738","https://openalex.org/W1989629861","https://openalex.org/W1992578799","https://openalex.org/W1992899488","https://openalex.org/W1993177346","https://openalex.org/W1993282347","https://openalex.org/W1993928995","https://openalex.org/W1994068740","https://openalex.org/W1994344724","https://openalex.org/W1995907662","https://openalex.org/W1999608828","https://openalex.org/W2001398410","https://openalex.org/W2002111767","https://openalex.org/W2004931090","https://openalex.org/W2004967944","https://openalex.org/W2010885175","https://openalex.org/W2013145865","https://openalex.org/W2014574246","https://openalex.org/W2017843836","https://openalex.org/W2022755995","https://openalex.org/W2023115763","https://openalex.org/W2023750903","https://openalex.org/W2025031463","https://openalex.org/W2025580327","https://openalex.org/W2025899185","https://openalex.org/W2025977038","https://openalex.org/W2032395580","https://openalex.org/W2033757486","https://openalex.org/W2039693707","https://openalex.org/W2040809566","https://openalex.org/W2045093121","https://openalex.org/W2047161363","https://openalex.org/W2047167085","https://openalex.org/W2047607630","https://openalex.org/W2051847120","https://openalex.org/W2053081979","https://openalex.org/W2057806291","https://openalex.org/W2063731290","https://openalex.org/W2065281489","https://openalex.org/W2067468321","https://openalex.org/W2080946353","https://openalex.org/W2082804431","https://openalex.org/W2085829368","https://openalex.org/W2085882659","https://openalex.org/W2091283009","https://openalex.org/W2092956762","https://openalex.org/W2098474447","https://openalex.org/W2099490136","https://openalex.org/W2099598754","https://openalex.org/W2105649494","https://openalex.org/W2111624983","https://openalex.org/W2113628145","https://openalex.org/W2118981984","https://openalex.org/W2120551199","https://openalex.org/W2122911921","https://openalex.org/W2135732933","https://openalex.org/W2137433045","https://openalex.org/W2141639822","https://openalex.org/W2148143831","https://openalex.org/W2148950790","https://openalex.org/W2149655632","https://openalex.org/W2151683271","https://openalex.org/W2160341881","https://openalex.org/W2169390877","https://openalex.org/W2170568632","https://openalex.org/W2176682109","https://openalex.org/W2183050958","https://openalex.org/W2278370115","https://openalex.org/W2279263454","https://openalex.org/W2290847742","https://openalex.org/W2315297180","https://openalex.org/W2315489011","https://openalex.org/W2316259871","https://openalex.org/W2319261171","https://openalex.org/W2321029289","https://openalex.org/W2326404322","https://openalex.org/W2339460745","https://openalex.org/W2345419012","https://openalex.org/W2346348293","https://openalex.org/W2415425414","https://openalex.org/W2462341956","https://openalex.org/W2533151130","https://openalex.org/W2553908226","https://openalex.org/W2556565974","https://openalex.org/W2559777733","https://openalex.org/W2590560529","https://openalex.org/W2597078857","https://openalex.org/W2604930678","https://openalex.org/W2609522315","https://openalex.org/W2623602792","https://openalex.org/W2736213666","https://openalex.org/W2740493003","https://openalex.org/W2753588101","https://openalex.org/W2756205407","https://openalex.org/W2760982347","https://openalex.org/W2761240402","https://openalex.org/W2767251210","https://openalex.org/W2767856718","https://openalex.org/W2767966404","https://openalex.org/W2770320302","https://openalex.org/W2772606519","https://openalex.org/W2777235740","https://openalex.org/W2785477444","https://openalex.org/W2791501381","https://openalex.org/W2792069216","https://openalex.org/W2794774007","https://openalex.org/W2796027835","https://openalex.org/W2797612297","https://openalex.org/W2801499266","https://openalex.org/W2803364122","https://openalex.org/W2805047307","https://openalex.org/W2805746983","https://openalex.org/W2806672448","https://openalex.org/W2807101583","https://openalex.org/W2883024539","https://openalex.org/W2883077013","https://openalex.org/W2884426393","https://openalex.org/W2885128148","https://openalex.org/W2888400067","https://openalex.org/W2888598609","https://openalex.org/W2895884529","https://openalex.org/W2900345897","https://openalex.org/W2900679761","https://openalex.org/W2901459245","https://openalex.org/W2903964626","https://openalex.org/W2904965820","https://openalex.org/W2909353434","https://openalex.org/W2910356247","https://openalex.org/W2911593691","https://openalex.org/W2913037494","https://openalex.org/W2913446986","https://openalex.org/W2914587883","https://openalex.org/W2915274006","https://openalex.org/W2916902753","https://openalex.org/W2924474406","https://openalex.org/W2936661052","https://openalex.org/W2938148420","https://openalex.org/W2941552683","https://openalex.org/W2942566598","https://openalex.org/W2948220248","https://openalex.org/W2949458744","https://openalex.org/W2949867299","https://openalex.org/W2953485655","https://openalex.org/W2955373955","https://openalex.org/W2955533504","https://openalex.org/W2955585664","https://openalex.org/W2964799408","https://openalex.org/W2966357564","https://openalex.org/W2968714973","https://openalex.org/W2969409006","https://openalex.org/W2970042698","https://openalex.org/W2974568688","https://openalex.org/W2982862739","https://openalex.org/W2983017086","https://openalex.org/W2988364536","https://openalex.org/W2989702634","https://openalex.org/W2990256176","https://openalex.org/W2990669650","https://openalex.org/W2991853974","https://openalex.org/W2994492843","https://openalex.org/W2996636067","https://openalex.org/W2998586415","https://openalex.org/W2999044305","https://openalex.org/W3004670928","https://openalex.org/W3004874245","https://openalex.org/W3008710578","https://openalex.org/W3011847211","https://openalex.org/W3014064183","https://openalex.org/W3016362891","https://openalex.org/W3020340480","https://openalex.org/W3027174726","https://openalex.org/W3027386205","https://openalex.org/W3034934060","https://openalex.org/W3036496153","https://openalex.org/W3039510816","https://openalex.org/W3040830058","https://openalex.org/W3041419111","https://openalex.org/W3043624656","https://openalex.org/W3044640842","https://openalex.org/W3045214525","https://openalex.org/W3046562742","https://openalex.org/W3046939357","https://openalex.org/W3048593737","https://openalex.org/W3081170494","https://openalex.org/W3087379538","https://openalex.org/W3088011183","https://openalex.org/W3088255675","https://openalex.org/W3088870471","https://openalex.org/W3089408777","https://openalex.org/W3090513030","https://openalex.org/W3092275826","https://openalex.org/W3093594852","https://openalex.org/W3094744425","https://openalex.org/W3095505997","https://openalex.org/W3098480809","https://openalex.org/W3098530784","https://openalex.org/W3100157108","https://openalex.org/W3101466413","https://openalex.org/W3113624188","https://openalex.org/W3117557114","https://openalex.org/W3122702518","https://openalex.org/W3124504074","https://openalex.org/W3130189698","https://openalex.org/W3130894852","https://openalex.org/W3132448805","https://openalex.org/W3136546688","https://openalex.org/W3136984727","https://openalex.org/W3143638934","https://openalex.org/W3153520238","https://openalex.org/W3156335568","https://openalex.org/W3166162063","https://openalex.org/W3168301580","https://openalex.org/W3172747904","https://openalex.org/W3177545261","https://openalex.org/W3177828909","https://openalex.org/W3179318616","https://openalex.org/W3180062435","https://openalex.org/W3183094458","https://openalex.org/W3186943259","https://openalex.org/W3194118602","https://openalex.org/W3195370847","https://openalex.org/W3198356917","https://openalex.org/W3202723344","https://openalex.org/W3204003698","https://openalex.org/W3204016418","https://openalex.org/W3205538317","https://openalex.org/W3209739359","https://openalex.org/W3211270181","https://openalex.org/W4200371786","https://openalex.org/W4200442859","https://openalex.org/W4205451998","https://openalex.org/W4205953903","https://openalex.org/W4210272978","https://openalex.org/W4210738888","https://openalex.org/W4210988809","https://openalex.org/W4213015661","https://openalex.org/W4213121119","https://openalex.org/W4213281311","https://openalex.org/W4214878574","https://openalex.org/W4220785481","https://openalex.org/W4220953717","https://openalex.org/W4224941115","https://openalex.org/W4225364558","https://openalex.org/W4226016556","https://openalex.org/W4226101063","https://openalex.org/W4226345188","https://openalex.org/W4230962467","https://openalex.org/W4251218076","https://openalex.org/W4284671611","https://openalex.org/W4293898865","https://openalex.org/W4296879105","https://openalex.org/W4297517019","https://openalex.org/W4298043013","https://openalex.org/W4302293700","https://openalex.org/W4307344393","https://openalex.org/W4307362175","https://openalex.org/W4307910502","https://openalex.org/W4309194456","https://openalex.org/W4310700855","https://openalex.org/W4312064763","https://openalex.org/W4313433156","https://openalex.org/W4313595867","https://openalex.org/W4313647284","https://openalex.org/W4313886937","https://openalex.org/W4318671359","https://openalex.org/W4318773745","https://openalex.org/W4322732093","https://openalex.org/W4360825536","https://openalex.org/W4362601635","https://openalex.org/W4366140591"],"related_works":["https://openalex.org/W1714666523","https://openalex.org/W2951464647","https://openalex.org/W2979943334","https://openalex.org/W2049109194","https://openalex.org/W4378800478","https://openalex.org/W3155734079","https://openalex.org/W2904154756","https://openalex.org/W2133533275","https://openalex.org/W2767856718","https://openalex.org/W3168770387"],"abstract_inverted_index":{"The":[0],"therapeutic":[1],"approach":[2,266],"of":[3,34,51,96,99,113,157,165,193,202,221,232,254,286],"targeted":[4],"protein":[5,19,98],"degradation":[6,237],"(TPD)":[7],"is":[8,56,195],"gaining":[9],"momentum":[10],"due":[11],"to":[12,31,103,143,197,244],"its":[13,209,275],"potentially":[14],"superior":[15],"effects":[16],"compared":[17,64],"with":[18,42,65,185,294],"inhibition.":[20],"Recent":[21],"advancements":[22],"in":[23,39,54,145,235,259,289],"the":[24,32,49,80,93,97,154,199,203,218,230,236,240,255,283,292,295],"biotech":[25],"and":[26,86,122,151,182,208,239,274,291],"pharmaceutical":[27],"sectors":[28],"have":[29],"led":[30],"development":[33],"compounds":[35],"that":[36,267],"are":[37,134],"currently":[38],"human":[40],"trials,":[41],"some":[43],"showing":[44],"promising":[45],"clinical":[46],"results.":[47],"However,":[48],"use":[50],"computational":[52,67,222,256,287],"tools":[53,114,194,223,257],"TPD":[55,71,158,163,290],"still":[57],"limited,":[58],"as":[59,84,172],"it":[60],"has":[61,268],"distinct":[62,169],"characteristics":[63],"traditional":[66,186],"drug":[68],"design":[69,273],"methods.":[70],"involves":[72],"creating":[73],"a":[74,110,251],"ternary":[75,178,206],"structure":[76,108,179],"(protein-degrader-ligase)":[77],"responsible":[78],"for":[79,117,211,224,271,298],"biological":[81],"function,":[82],"such":[83,171],"ubiquitination":[85],"subsequent":[87],"proteasomal":[88],"degradation,":[89,183],"which":[90],"depends":[91],"on":[92,277],"spatial":[94],"orientation":[95],"interest":[100],"(POI)":[101],"relative":[102],"E2-loaded":[104],"ubiquitin.":[105],"Modeling":[106],"this":[107,214],"necessitates":[109],"unique":[111],"blend":[112],"initially":[115],"developed":[116],"small":[118,139,187],"molecules":[119],"(e.g.,":[120,124],"docking)":[121],"biologics":[123],"protein-protein":[125],"interaction":[126],"modeling).":[127],"Additionally,":[128],"degrader":[129,272],"molecules,":[130],"particularly":[131],"heterobifunctional":[132],"degraders,":[133],"generally":[135],"larger":[136],"than":[137],"conventional":[138],"molecule":[140,188],"drugs,":[141],"leading":[142],"challenges":[144],"determining":[146],"drug-like":[147],"properties":[148],"like":[149],"solubility":[150],"permeability.":[152],"Furthermore,":[153],"catalytic":[155],"nature":[156,201],"makes":[159],"occupancy-based":[160],"modeling":[161],"insufficient.":[162],"consists":[164],"multiple":[166],"interconnected":[167],"yet":[168],"steps,":[170],"POI":[173],"binding,":[174,177],"E3":[175],"ligase":[176],"interactions,":[180],"ubiquitination,":[181],"along":[184],"properties.":[189],"A":[190],"comprehensive":[191],"set":[192],"needed":[196],"address":[198],"dynamic":[200],"induced":[204],"proximity":[205],"complex":[207],"implications":[210],"ubiquitination.":[212],"In":[213],"Perspective,":[215],"we":[216,248,281],"discuss":[217],"current":[219],"state":[220],"TPD.":[225,260],"We":[226,261],"start":[227],"by":[228],"describing":[229],"series":[231],"steps":[233],"involved":[234],"process":[238],"experimental":[241],"methods":[242,288],"used":[243],"characterize":[245],"them.":[246],"Then,":[247],"delve":[249],"into":[250],"detailed":[252],"analysis":[253],"employed":[258],"also":[262],"present":[263],"an":[264],"integrative":[265],"proven":[269],"successful":[270],"impact":[276],"project":[278],"decisions.":[279],"Finally,":[280],"examine":[282],"future":[284],"prospects":[285],"areas":[293],"greatest":[296],"potential":[297],"impact.":[299]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":3}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
