{"id":"https://openalex.org/W4378172578","doi":"https://doi.org/10.1021/acs.jcim.3c00397","title":"A Step Forward toward Selective Activation/Inhibition of Bak, a Pro-Apoptotic Member of the Bcl-2 Protein Family: Discovery of New Prospective Allosteric Sites Using Molecular Dynamics","display_name":"A Step Forward toward Selective Activation/Inhibition of Bak, a Pro-Apoptotic Member of the Bcl-2 Protein Family: Discovery of New Prospective Allosteric Sites Using Molecular Dynamics","publication_year":2023,"publication_date":"2023-05-25","ids":{"openalex":"https://openalex.org/W4378172578","doi":"https://doi.org/10.1021/acs.jcim.3c00397","pmid":"https://pubmed.ncbi.nlm.nih.gov/37226335"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00397","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1021/acs.jcim.3c00397","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://upcommons.upc.edu/bitstreams/281a41b5-2182-4c53-96e7-2f7b9e14f034/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060982385","display_name":"Guillem Vila-Juli\u00e0","orcid":"https://orcid.org/0000-0001-5576-7442"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillem Vila-Juli\u00e0","raw_affiliation_strings":["Department of Chemical Engineering, Universitat Politecnica de Catalunya- Barcelona Tech. Av. Diagonal, 647, 08028 Barcelona, Spain","Department of Materials Science and Physical Chemistry, University of Barcelona and the Institut de Recerca en Quimica Teorica i Computacional (IQTCUB), Marti i Franques, 1, 08028 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Universitat Politecnica de Catalunya- Barcelona Tech. Av. Diagonal, 647, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Department of Materials Science and Physical Chemistry, University of Barcelona and the Institut de Recerca en Quimica Teorica i Computacional (IQTCUB), Marti i Franques, 1, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013455255","display_name":"Juan J. P\u00e9rez","orcid":"https://orcid.org/0000-0002-0748-8147"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan J. Perez","raw_affiliation_strings":["Department of Chemical Engineering, Universitat Politecnica de Catalunya- Barcelona Tech. Av. Diagonal, 647, 08028 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Universitat Politecnica de Catalunya- Barcelona Tech. Av. Diagonal, 647, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100748660","display_name":"J. Rubio","orcid":"https://orcid.org/0000-0002-5529-2325"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jaime Rubio-Martinez","raw_affiliation_strings":["Department of Materials Science and Physical Chemistry, University of Barcelona and the Institut de Recerca en Quimica Teorica i Computacional (IQTCUB), Marti i Franques, 1, 08028 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Materials Science and Physical Chemistry, University of Barcelona and the Institut de Recerca en Quimica Teorica i Computacional (IQTCUB), Marti i Franques, 1, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100748660"],"corresponding_institution_ids":["https://openalex.org/I71999127"],"apc_list":null,"apc_paid":null,"fwci":0.7613,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.72341403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"63","issue":"11","first_page":"3544","last_page":"3556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10294","display_name":"Cell death mechanisms and regulation","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10294","display_name":"Cell death mechanisms and regulation","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.893470287322998},{"id":"https://openalex.org/keywords/neurodegeneration","display_name":"Neurodegeneration","score":0.6173673272132874},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5163637399673462},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48733553290367126},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4695380926132202},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4475206732749939},{"id":"https://openalex.org/keywords/programmed-cell-death","display_name":"Programmed cell death","score":0.43003514409065247},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4113995134830475},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.40396979451179504},{"id":"https://openalex.org/keywords/apoptosis","display_name":"Apoptosis","score":0.3295602798461914},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2630586326122284},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2055324912071228},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.15668821334838867},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.14774611592292786},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07769134640693665}],"concepts":[{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.893470287322998},{"id":"https://openalex.org/C2776925932","wikidata":"https://www.wikidata.org/wiki/Q1755122","display_name":"Neurodegeneration","level":3,"score":0.6173673272132874},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5163637399673462},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48733553290367126},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4695380926132202},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4475206732749939},{"id":"https://openalex.org/C31573885","wikidata":"https://www.wikidata.org/wiki/Q304484","display_name":"Programmed cell death","level":3,"score":0.43003514409065247},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4113995134830475},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.40396979451179504},{"id":"https://openalex.org/C190283241","wikidata":"https://www.wikidata.org/wiki/Q14599311","display_name":"Apoptosis","level":2,"score":0.3295602798461914},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2630586326122284},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2055324912071228},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.15668821334838867},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.14774611592292786},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07769134640693665},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072224","descriptor_name":"Bcl-2-Like Protein 11","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072224","descriptor_name":"Bcl-2-Like Protein 11","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000072224","descriptor_name":"Bcl-2-Like Protein 11","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D050998","descriptor_name":"bcl-2 Homologous Antagonist-Killer Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051017","descriptor_name":"Apoptosis Regulatory Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.3c00397","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1021/acs.jcim.3c00397","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:37226335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37226335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:upcommons.upc.edu:2117/393356","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/393356","pdf_url":"https://upcommons.upc.edu/bitstreams/281a41b5-2182-4c53-96e7-2f7b9e14f034/download","source":{"id":"https://openalex.org/S4210207057","display_name":"QRU Quaderns de Recerca en Urbanisme","issn_l":"2014-9689","issn":["2014-9689","2385-6777"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310322448","host_organization_name":"Q71272178","host_organization_lineage":["https://openalex.org/P4310322448"],"host_organization_lineage_names":["Q71272178"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:diposit.ub.edu:2445/200147","is_oa":false,"landing_page_url":"https://hdl.handle.net/2445/200147","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Ci\u00e8ncia dels Materials i Qu\u00edmica F\u00edsica)","raw_type":"info:eu-repo/semantics/acceptedVersion"}],"best_oa_location":{"id":"pmh:oai:upcommons.upc.edu:2117/393356","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/393356","pdf_url":"https://upcommons.upc.edu/bitstreams/281a41b5-2182-4c53-96e7-2f7b9e14f034/download","source":{"id":"https://openalex.org/S4210207057","display_name":"QRU Quaderns de Recerca en Urbanisme","issn_l":"2014-9689","issn":["2014-9689","2385-6777"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310322448","host_organization_name":"Q71272178","host_organization_lineage":["https://openalex.org/P4310322448"],"host_organization_lineage_names":["Q71272178"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1783691375","display_name":null,"funder_award_id":"AGAUR","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G3463749021","display_name":null,"funder_award_id":"2021SGR00350","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G3654124718","display_name":null,"funder_award_id":"2021SGR00342","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G4730178995","display_name":null,"funder_award_id":"CEX2021-001202-M","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G6998220818","display_name":null,"funder_award_id":"CEX2021-001202-M","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7635924522","display_name":null,"funder_award_id":"2021SGR00350","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4378172578.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1178456644","https://openalex.org/W1488202000","https://openalex.org/W1970510253","https://openalex.org/W1976499671","https://openalex.org/W1980792888","https://openalex.org/W1992899488","https://openalex.org/W2012076962","https://openalex.org/W2026431839","https://openalex.org/W2035266068","https://openalex.org/W2036411709","https://openalex.org/W2042912415","https://openalex.org/W2052475208","https://openalex.org/W2062051632","https://openalex.org/W2066571367","https://openalex.org/W2067174909","https://openalex.org/W2071535939","https://openalex.org/W2081490942","https://openalex.org/W2081883332","https://openalex.org/W2088883749","https://openalex.org/W2097242987","https://openalex.org/W2106140689","https://openalex.org/W2124483575","https://openalex.org/W2139347878","https://openalex.org/W2144288821","https://openalex.org/W2146409593","https://openalex.org/W2147993766","https://openalex.org/W2167182598","https://openalex.org/W2187458946","https://openalex.org/W2287445395","https://openalex.org/W2332712348","https://openalex.org/W2335200606","https://openalex.org/W2345969009","https://openalex.org/W2396264007","https://openalex.org/W2404280981","https://openalex.org/W2405490536","https://openalex.org/W2511010414","https://openalex.org/W2517282085","https://openalex.org/W2605345574","https://openalex.org/W2732876755","https://openalex.org/W2733836692","https://openalex.org/W2739819331","https://openalex.org/W2761494335","https://openalex.org/W2770278477","https://openalex.org/W2910046601","https://openalex.org/W2954835418","https://openalex.org/W2998559157","https://openalex.org/W2999822081","https://openalex.org/W3039562798","https://openalex.org/W3084489882","https://openalex.org/W3159310701","https://openalex.org/W3165281418","https://openalex.org/W3186566735","https://openalex.org/W4205519345","https://openalex.org/W4220982907","https://openalex.org/W4247157874","https://openalex.org/W4294676839"],"related_works":["https://openalex.org/W2046450796","https://openalex.org/W2939998722","https://openalex.org/W2169750653","https://openalex.org/W2195592873","https://openalex.org/W1971782741","https://openalex.org/W3005062988","https://openalex.org/W4211217675","https://openalex.org/W2911329269","https://openalex.org/W2075777827","https://openalex.org/W2592466923"],"abstract_inverted_index":{"Bak":[0,59,124,181,197,200,205,241],"is":[1,53,60],"a":[2,6,14,19,42,88,99,111,127],"pro-apoptotic":[3],"protein":[4],"and":[5,104,213],"member":[7],"of":[8,24,35,44,83,118,122,245],"the":[9,33,36,48,79,84,116,142,171,180,223,230,243],"Bcl-2":[10,85],"family":[11,86],"that":[12,40,114],"plays":[13],"key":[15],"role":[16],"in":[17,47,55,63,67,126,179,201,206,229,253],"apoptosis,":[18],"programmed":[20],"cell":[21],"death":[22,30],"mechanism":[23],"multicellular":[25],"organisms.":[26],"Its":[27],"activation":[28,125,132],"under":[29],"stimuli":[31],"triggers":[32],"permeabilization":[34],"mitochondrial":[37],"outer":[38],"membrane":[39],"represents":[41],"point":[43],"no":[45],"return":[46],"apoptotic":[49],"pathway.":[50],"This":[51,108],"process":[52],"deregulated":[54],"many":[56],"tumors":[57],"where":[58,101],"inactivated,":[61],"whereas":[62],"other":[64],"cases":[65],"like":[66],"neurodegeneration,":[68],"it":[69],"exhibits":[70],"an":[71,93,154,214],"excessive":[72],"response":[73],"leading":[74],"to":[75,144,157,175],"disorders":[76],"such":[77],"as":[78,161],"Alzheimer":[80],"disease.":[81],"Members":[82],"share":[87],"common":[89],"3D":[90],"structure,":[91],"exhibiting":[92],"extremely":[94],"similar":[95],"orthosteric":[96],"binding":[97],"site,":[98],"place":[100],"both":[102],"pro":[103],"antiapoptotic":[105],"proteins":[106],"bind.":[107],"similarity":[109],"raises":[110],"selectivity":[112],"issue":[113],"hampers":[115],"identification":[117,244],"new":[119,146,246],"drugs,":[120],"capable":[121],"altering":[123],"selective":[128],"manner.":[129],"An":[130],"alternative":[131],"site":[133],"triggered":[134],"by":[135,219],"antibodies":[136],"has":[137,165],"been":[138,167],"recently":[139],"identified,":[140],"opening":[141],"opportunity":[143],"undertake":[145],"drug":[147],"discovery":[148],"studies.":[149],"Despite":[150],"this":[151,184,254],"recent":[152],"identification,":[153],"exhaustive":[155],"study":[156,173],"identify":[158],"cryptic":[159],"pockets":[160],"prospective":[162,247],"allosteric":[163,248],"sites":[164],"not":[166,250],"yet":[168],"performed.":[169],"Thus,":[170],"present":[172,231],"aims":[174],"characterize":[176],"novel":[177],"hotspots":[178],"structure.":[182],"For":[183],"purpose,":[185],"we":[186],"have":[187],"carried":[188],"out":[189],"extensive":[190],"molecular":[191],"dynamics":[192],"simulations":[193],"using":[194],"three":[195],"different":[196],"systems":[198],"including":[199],"its":[202,209],"<i>apo</i>":[203],"form,":[204,216],"complex":[207],"with":[208],"endogen":[210],"activator":[211],"Bim":[212,221],"intermediate":[215],"set":[217],"up":[218],"removing":[220],"from":[222],"previous":[224],"complex.":[225],"The":[226],"results":[227],"reported":[228],"work":[232],"shed":[233],"some":[234],"light":[235],"on":[236,240],"future":[237],"docking":[238],"studies":[239],"through":[242],"sites,":[249],"previously":[251],"described":[252],"protein.":[255]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
