{"id":"https://openalex.org/W4377941039","doi":"https://doi.org/10.1021/acs.jcim.3c00290","title":"Fast Substructure Search in Combinatorial Library Spaces","display_name":"Fast Substructure Search in Combinatorial Library Spaces","publication_year":2023,"publication_date":"2023-05-24","ids":{"openalex":"https://openalex.org/W4377941039","doi":"https://doi.org/10.1021/acs.jcim.3c00290","pmid":"https://pubmed.ncbi.nlm.nih.gov/37221856"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00290","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00290","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075213940","display_name":"Thomas Liphardt","orcid":"https://orcid.org/0000-0002-1771-4689"},"institutions":[{"id":"https://openalex.org/I4210136915","display_name":"Idorsia (Switzerland)","ror":"https://ror.org/03va9ng43","country_code":"CH","type":"company","lineage":["https://openalex.org/I4210136915"]},{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Thomas Liphardt","raw_affiliation_strings":["Scientific Computing Drug Discovery, Idorsia Pharmaceuticals, Ltd., CH-4123 Allschwil, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-1771-4689","affiliations":[{"raw_affiliation_string":"Scientific Computing Drug Discovery, Idorsia Pharmaceuticals, Ltd., CH-4123 Allschwil, Switzerland","institution_ids":["https://openalex.org/I7495430","https://openalex.org/I4210136915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102021785","display_name":"Thomas Sander","orcid":"https://orcid.org/0000-0003-4019-1959"},"institutions":[{"id":"https://openalex.org/I4210136915","display_name":"Idorsia (Switzerland)","ror":"https://ror.org/03va9ng43","country_code":"CH","type":"company","lineage":["https://openalex.org/I4210136915"]},{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Thomas Sander","raw_affiliation_strings":["Scientific Computing Drug Discovery, Idorsia Pharmaceuticals, Ltd., CH-4123 Allschwil, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scientific Computing Drug Discovery, Idorsia Pharmaceuticals, Ltd., CH-4123 Allschwil, Switzerland","institution_ids":["https://openalex.org/I7495430","https://openalex.org/I4210136915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5075213940"],"corresponding_institution_ids":["https://openalex.org/I4210136915","https://openalex.org/I7495430"],"apc_list":null,"apc_paid":null,"fwci":4.9326,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.95400958,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"63","issue":"16","first_page":"5133","last_page":"5141"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.974399983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.7087544202804565},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6887215971946716},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6366108655929565},{"id":"https://openalex.org/keywords/combinatorial-search","display_name":"Combinatorial search","score":0.601465106010437},{"id":"https://openalex.org/keywords/synthon","display_name":"Synthon","score":0.508649468421936},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.46474310755729675},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.44767746329307556},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4448862373828888},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.42685580253601074},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3671156167984009},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.30006134510040283},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2870529890060425},{"id":"https://openalex.org/keywords/beam-search","display_name":"Beam search","score":0.18671655654907227},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.14488139748573303},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09326368570327759},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07663911581039429},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07586240768432617}],"concepts":[{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.7087544202804565},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6887215971946716},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6366108655929565},{"id":"https://openalex.org/C203208320","wikidata":"https://www.wikidata.org/wiki/Q5150830","display_name":"Combinatorial search","level":4,"score":0.601465106010437},{"id":"https://openalex.org/C40869318","wikidata":"https://www.wikidata.org/wiki/Q899050","display_name":"Synthon","level":2,"score":0.508649468421936},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.46474310755729675},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.44767746329307556},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4448862373828888},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.42685580253601074},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3671156167984009},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30006134510040283},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2870529890060425},{"id":"https://openalex.org/C19889080","wikidata":"https://www.wikidata.org/wiki/Q2835852","display_name":"Beam search","level":3,"score":0.18671655654907227},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.14488139748573303},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09326368570327759},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07663911581039429},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07586240768432617},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c00290","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00290","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:37221856","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37221856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1578639442","https://openalex.org/W2018774810","https://openalex.org/W2023630889","https://openalex.org/W2040196215","https://openalex.org/W2110355460","https://openalex.org/W2920995682","https://openalex.org/W2981405700","https://openalex.org/W3093697811","https://openalex.org/W3095380161","https://openalex.org/W3105920383","https://openalex.org/W3196942650","https://openalex.org/W4207004502"],"related_works":["https://openalex.org/W2120609036","https://openalex.org/W2208339373","https://openalex.org/W2354057059","https://openalex.org/W2042460203","https://openalex.org/W2064794194","https://openalex.org/W2008047931","https://openalex.org/W2540870307","https://openalex.org/W2808808802","https://openalex.org/W2998661990","https://openalex.org/W3106196307"],"abstract_inverted_index":{"We":[0,69],"present":[1],"an":[2],"efficient":[3],"algorithm":[4],"for":[5,58],"substructure":[6,89],"search":[7,90],"in":[8,60,91],"combinatorial":[9,62,93],"libraries":[10,63],"defined":[11],"by":[12,25],"synthons,":[13],"i.e.,":[14],"substructures":[15],"with":[16],"connection":[17],"points.":[18],"Our":[19],"method":[20],"improves":[21],"on":[22,53],"existing":[23],"approaches":[24],"introducing":[26],"powerful":[27],"heuristics":[28],"and":[29,83],"fast":[30],"fingerprint":[31],"screening":[32],"to":[33,87],"quickly":[34],"eliminate":[35],"branches":[36],"of":[37,40,49,76],"nonmatching":[38],"combinations":[39],"synthons.":[41],"With":[42],"this,":[43],"we":[44,84],"achieve":[45],"typical":[46],"response":[47],"times":[48],"a":[50,54],"few":[51],"seconds":[52],"standard":[55],"desktop":[56],"computer":[57],"searches":[59],"large":[61],"like":[64],"the":[65,71,77,80],"Enamine":[66],"REAL":[67],"Space.":[68],"published":[70],"Java":[72],"source":[73],"as":[74],"part":[75],"OpenChemLib":[78],"under":[79],"BSD":[81],"license,":[82],"implemented":[85],"tools":[86],"enable":[88],"custom":[92],"libraries.":[94]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
