{"id":"https://openalex.org/W4380739447","doi":"https://doi.org/10.1021/acs.jcim.3c00253","title":"PLANET: A Multi-objective Graph Neural Network Model for Protein\u2013Ligand Binding Affinity Prediction","display_name":"PLANET: A Multi-objective Graph Neural Network Model for Protein\u2013Ligand Binding Affinity Prediction","publication_year":2023,"publication_date":"2023-06-15","ids":{"openalex":"https://openalex.org/W4380739447","doi":"https://doi.org/10.1021/acs.jcim.3c00253","pmid":"https://pubmed.ncbi.nlm.nih.gov/37319418"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00253","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00253","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101956052","display_name":"Xiangying Zhang","orcid":"https://orcid.org/0000-0003-3662-4491"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangying Zhang","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026956315","display_name":"Haotian Gao","orcid":"https://orcid.org/0000-0002-6153-6058"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haotian Gao","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-6153-6058","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100735476","display_name":"Haojie Wang","orcid":"https://orcid.org/0000-0003-4605-148X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haojie Wang","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013167713","display_name":"Zhihang Chen","orcid":"https://orcid.org/0000-0003-1553-3312"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihang Chen","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100442944","display_name":"Zhe Zhang","orcid":"https://orcid.org/0000-0001-7509-6965"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Zhang","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063018964","display_name":"Xinchong Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinchong Chen","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689303","display_name":"Yan Li","orcid":"https://orcid.org/0000-0002-8259-2470"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-8259-2470","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101708276","display_name":"Yifei Qi","orcid":"https://orcid.org/0000-0003-2853-7910"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yifei Qi","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0003-2853-7910","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016374232","display_name":"Renxiao Wang","orcid":"https://orcid.org/0000-0003-0485-0259"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Renxiao Wang","raw_affiliation_strings":["Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0003-0485-0259","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, School of Pharmacy, Fudan University, 826 Zhangheng Road, Shanghai 201203, People's Republic of China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5016374232","https://openalex.org/A5101708276"],"corresponding_institution_ids":["https://openalex.org/I24943067"],"apc_list":null,"apc_paid":null,"fwci":20.5183,"has_fulltext":false,"cited_by_count":106,"citation_normalized_percentile":{"value":0.99591742,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"64","issue":"7","first_page":"2205","last_page":"2220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9591000080108643,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5826531648635864},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5682634711265564},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5536429286003113},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5335317850112915},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.49208277463912964},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.48438888788223267},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48062247037887573},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4468737244606018},{"id":"https://openalex.org/keywords/protein-ligand","display_name":"Protein ligand","score":0.42044806480407715},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.41788822412490845},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2704947292804718},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2121349573135376},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0962616503238678},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08758854866027832}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5826531648635864},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5682634711265564},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5536429286003113},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5335317850112915},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.49208277463912964},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.48438888788223267},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48062247037887573},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4468737244606018},{"id":"https://openalex.org/C109095088","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Protein ligand","level":2,"score":0.42044806480407715},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.41788822412490845},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2704947292804718},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2121349573135376},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0962616503238678},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08758854866027832},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016083","descriptor_name":"Planets","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016083","descriptor_name":"Planets","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016083","descriptor_name":"Planets","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016083","descriptor_name":"Planets","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c00253","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00253","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:37319418","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37319418","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1108311842","display_name":null,"funder_award_id":"22033001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1657231294","display_name":null,"funder_award_id":"21472227","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G16762824","display_name":null,"funder_award_id":"20S11900500","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G495447739","display_name":null,"funder_award_id":"2016YFA0502302","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5047156528","display_name":null,"funder_award_id":"81430083","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5427963596","display_name":null,"funder_award_id":"82173739","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7402392648","display_name":null,"funder_award_id":"81725022","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8442451054","display_name":null,"funder_award_id":"21661162003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W1757990252","https://openalex.org/W1950993160","https://openalex.org/W1968319881","https://openalex.org/W2027423337","https://openalex.org/W2096541451","https://openalex.org/W2103034037","https://openalex.org/W2128332459","https://openalex.org/W2134967712","https://openalex.org/W2139047213","https://openalex.org/W2143210482","https://openalex.org/W2156125289","https://openalex.org/W2170747616","https://openalex.org/W2340782621","https://openalex.org/W2536259549","https://openalex.org/W2550887636","https://openalex.org/W2560915683","https://openalex.org/W2583907533","https://openalex.org/W2587598315","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2785947426","https://openalex.org/W2786672974","https://openalex.org/W2786722833","https://openalex.org/W2795068716","https://openalex.org/W2796788874","https://openalex.org/W2809216727","https://openalex.org/W2810098156","https://openalex.org/W2860192827","https://openalex.org/W2883269759","https://openalex.org/W2894601800","https://openalex.org/W2899788782","https://openalex.org/W2902812092","https://openalex.org/W2916534270","https://openalex.org/W2918239264","https://openalex.org/W2951676304","https://openalex.org/W2963833291","https://openalex.org/W2969325194","https://openalex.org/W2969996838","https://openalex.org/W2974531988","https://openalex.org/W2978484973","https://openalex.org/W3001433048","https://openalex.org/W3008726875","https://openalex.org/W3010016408","https://openalex.org/W3015572666","https://openalex.org/W3019745511","https://openalex.org/W3020511336","https://openalex.org/W3021453944","https://openalex.org/W3026986333","https://openalex.org/W3029836473","https://openalex.org/W3030018498","https://openalex.org/W3032123378","https://openalex.org/W3045085645","https://openalex.org/W3082411326","https://openalex.org/W3092297806","https://openalex.org/W3092705559","https://openalex.org/W3098189759","https://openalex.org/W3118091546","https://openalex.org/W3130189352","https://openalex.org/W3135935512","https://openalex.org/W3138367350","https://openalex.org/W3140330522","https://openalex.org/W3151148247","https://openalex.org/W3156083564","https://openalex.org/W3157078379","https://openalex.org/W3172303648","https://openalex.org/W3203204467","https://openalex.org/W3209909976","https://openalex.org/W3210114395","https://openalex.org/W3216686093","https://openalex.org/W4200139236","https://openalex.org/W4200233821","https://openalex.org/W4223481922","https://openalex.org/W4223483233","https://openalex.org/W4281381643","https://openalex.org/W4282917061","https://openalex.org/W4283390471","https://openalex.org/W4287325738","https://openalex.org/W4289518623","https://openalex.org/W4295547865"],"related_works":["https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2057846043","https://openalex.org/W2093426296","https://openalex.org/W2336040088","https://openalex.org/W4402273478","https://openalex.org/W2594726310"],"abstract_inverted_index":{"Predicting":[0],"protein-ligand":[1,28,102,105,114],"binding":[2,43,71,103,118,248],"affinity":[3,119,249],"is":[4],"a":[5,51,92,126,154,171,254],"central":[6],"issue":[7],"in":[8,18,247],"drug":[9],"design.":[10],"Various":[11],"deep":[12,165,194],"learning":[13,166,195,198],"models":[14,167],"have":[15,49],"been":[16],"published":[17],"recent":[19],"years,":[20],"where":[21],"many":[22],"of":[23,41,69,82,129,144,222,245],"them":[24],"rely":[25],"on":[26,37,73,148,183,201],"3D":[27,67],"complex":[29],"structures":[30],"as":[31,86,168,170,209],"input":[32],"and":[33,77,108,175,196,243],"tend":[34],"to":[35,135,158,226],"focus":[36],"the":[38,65,70,74,78,83,101,113,123,136,141,149,159,184,202,210,228,240],"single":[39],"task":[40],"reproducing":[42],"affinity.":[44],"In":[45,178],"this":[46],"study,":[47],"we":[48],"developed":[50],"graph":[52],"neural":[53],"network":[54],"model":[55,63,143],"called":[56],"PLANET":[57,152,205,232,246],"(Protein-Ligand":[58],"Affinity":[59],"prediction":[60],"NETwork).":[61],"This":[62],"takes":[64],"graph-represented":[66],"structure":[68,81],"pocket":[72],"target":[75],"protein":[76],"2D":[79],"chemical":[80],"ligand":[84,109],"molecule":[85],"input.":[87],"It":[88],"was":[89,189],"trained":[90],"through":[91],"multi-objective":[93],"process":[94],"with":[95,116],"three":[96],"related":[97],"tasks,":[98],"including":[99],"deriving":[100,140],"affinity,":[104],"contact":[106],"map,":[107],"distance":[110],"matrix.":[111],"Besides":[112],"complexes":[115],"known":[117],"data":[120,138],"retrieved":[121],"from":[122],"PDBbind":[124],"database,":[125],"large":[127],"number":[128],"non-binder":[130],"decoys":[131],"were":[132],"also":[133],"added":[134],"training":[137],"for":[139,257],"final":[142],"PLANET.":[145],"When":[146],"tested":[147],"CASF-2016":[150],"benchmark,":[151,186,204],"exhibited":[153],"scoring":[155],"power":[156,174],"comparable":[157,207],"best":[160],"result":[161],"yielded":[162],"by":[163],"other":[164],"well":[169],"reasonable":[172],"ranking":[173],"docking":[176,212],"power.":[177],"virtual":[179,260],"screening":[180],"trials":[181],"conducted":[182],"DUD-E":[185],"PLANET's":[187],"performance":[188],"notably":[190],"better":[191],"than":[192,220],"several":[193],"machine":[197],"models.":[199],"As":[200],"LIT-PCBA":[203],"achieved":[206],"accuracy":[208,242],"conventional":[211],"program":[213],"Glide,":[214],"but":[215],"it":[216,251],"only":[217],"spent":[218],"less":[219],"1%":[221],"Glide's":[223],"computation":[224],"time":[225],"finish":[227],"same":[229],"job":[230],"because":[231],"did":[233],"not":[234],"need":[235],"exhaustive":[236],"conformational":[237],"sampling.":[238],"Considering":[239],"decent":[241],"efficiency":[244],"prediction,":[250],"may":[252],"become":[253],"useful":[255],"tool":[256],"conducting":[258],"large-scale":[259],"screening.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":56},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":8}],"updated_date":"2026-04-27T08:22:11.395708","created_date":"2025-10-10T00:00:00"}
