{"id":"https://openalex.org/W4322422874","doi":"https://doi.org/10.1021/acs.jcim.3c00218","title":"Beware of Simple Methods for Structure-Based Virtual Screening: The Critical Importance of Broader Comparisons","display_name":"Beware of Simple Methods for Structure-Based Virtual Screening: The Critical Importance of Broader Comparisons","publication_year":2023,"publication_date":"2023-02-27","ids":{"openalex":"https://openalex.org/W4322422874","doi":"https://doi.org/10.1021/acs.jcim.3c00218","pmid":"https://pubmed.ncbi.nlm.nih.gov/36848585"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00218","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00218","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.3c00218","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014611705","display_name":"Viet\u2010Khoa Tran\u2010Nguyen","orcid":"https://orcid.org/0000-0001-7497-333X"},"institutions":[{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Viet-Khoa Tran-Nguyen","raw_affiliation_strings":["Centre de Recherche en Canc\u00e9rologie de Marseille, Marseille 13009, France"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche en Canc\u00e9rologie de Marseille, Marseille 13009, France","institution_ids":["https://openalex.org/I4210144608"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005597587","display_name":"Pedro J. Ballester","orcid":"https://orcid.org/0000-0002-4078-743X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Pedro J. Ballester","raw_affiliation_strings":["Department of Bioengineering, Imperial College London, London SW7 2AZ, U.K","Imperial College London (South Kensington Campus, London SW7 2AZ - United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Imperial College London, London SW7 2AZ, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London (South Kensington Campus, London SW7 2AZ - United Kingdom)","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005597587"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":4.495,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.95479888,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"63","issue":"5","first_page":"1401","last_page":"1405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8780388832092285},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.8214627504348755},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.675309956073761},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6133245229721069},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.527365505695343},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.4540258049964905},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3433460593223572},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.19444066286087036},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19052672386169434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10328656435012817}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8780388832092285},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.8214627504348755},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.675309956073761},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6133245229721069},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.527365505695343},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.4540258049964905},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3433460593223572},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.19444066286087036},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19052672386169434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10328656435012817},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1021/acs.jcim.3c00218","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00218","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36848585","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36848585","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10015451","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10015451","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10015451/pdf/ci3c00218.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/103005","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/103005","pdf_url":"http://hdl.handle.net/10044/1/103005","source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1405","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-04193983v1","is_oa":false,"landing_page_url":"https://cnrs.hal.science/hal-04193983","pdf_url":null,"source":{"id":"https://openalex.org/S4406922393","display_name":"HAL AMU","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2023, 63 (5), pp.1401-1405. &#x27E8;10.1021/acs.jcim.3c00218&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.3c00218","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00218","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320320670","display_name":"Wolfson Foundation","ror":"https://ror.org/0333xzh65"},{"id":"https://openalex.org/F4320322361","display_name":"Fondation ARC pour la Recherche sur le Cancer","ror":"https://ror.org/0489qz649"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1950993160","https://openalex.org/W1966716734","https://openalex.org/W1986994943","https://openalex.org/W1988037271","https://openalex.org/W1993285168","https://openalex.org/W2001722230","https://openalex.org/W2023004460","https://openalex.org/W2028629022","https://openalex.org/W2030286884","https://openalex.org/W2079331631","https://openalex.org/W2108245251","https://openalex.org/W2132629607","https://openalex.org/W2148512505","https://openalex.org/W2165843192","https://openalex.org/W2169678694","https://openalex.org/W2336411773","https://openalex.org/W2399340976","https://openalex.org/W2583907533","https://openalex.org/W2608559058","https://openalex.org/W2774371249","https://openalex.org/W2794491987","https://openalex.org/W2803094965","https://openalex.org/W2889677957","https://openalex.org/W2900090807","https://openalex.org/W2922063386","https://openalex.org/W2949923262","https://openalex.org/W2955986556","https://openalex.org/W2963729354","https://openalex.org/W2984249386","https://openalex.org/W2995998725","https://openalex.org/W3004731690","https://openalex.org/W3005417975","https://openalex.org/W3020257619","https://openalex.org/W3028815767","https://openalex.org/W3035777330","https://openalex.org/W3043660595","https://openalex.org/W3087491618","https://openalex.org/W3090319655","https://openalex.org/W3097145107","https://openalex.org/W3102043580","https://openalex.org/W3104508774","https://openalex.org/W3104705366","https://openalex.org/W3118248066","https://openalex.org/W3128405656","https://openalex.org/W3157078379","https://openalex.org/W3164081635","https://openalex.org/W3172303648","https://openalex.org/W4281740412"],"related_works":["https://openalex.org/W3180887190","https://openalex.org/W2320211095","https://openalex.org/W2308164565","https://openalex.org/W2062768126","https://openalex.org/W1585007175","https://openalex.org/W2922499735","https://openalex.org/W3003855012","https://openalex.org/W1566373881","https://openalex.org/W2382521049","https://openalex.org/W1557343999"],"abstract_inverted_index":{"We":[0,19],"discuss":[1],"how":[2],"data":[3],"unbiasing":[4],"and":[5],"simple":[6,42],"methods":[7,43],"such":[8],"as":[9],"protein-ligand":[10],"Interaction":[11],"FingerPrint":[12],"(IFP)":[13],"can":[14],"overestimate":[15],"virtual":[16,51],"screening":[17],"performance.":[18],"also":[20],"show":[21],"that":[22,41],"IFP":[23],"is":[24],"strongly":[25],"outperformed":[26],"by":[27],"target-specific":[28],"machine-learning":[29,47],"scoring":[30,48],"functions,":[31],"which":[32],"were":[33,44],"not":[34],"considered":[35],"in":[36],"a":[37],"recent":[38],"report":[39],"concluding":[40],"better":[45],"than":[46],"functions":[49],"at":[50],"screening.":[52]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":5}],"updated_date":"2026-04-16T15:07:20.185449","created_date":"2025-10-10T00:00:00"}
