{"id":"https://openalex.org/W4361282452","doi":"https://doi.org/10.1021/acs.jcim.3c00192","title":"Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks","display_name":"Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks","publication_year":2023,"publication_date":"2023-03-29","ids":{"openalex":"https://openalex.org/W4361282452","doi":"https://doi.org/10.1021/acs.jcim.3c00192","pmid":"https://pubmed.ncbi.nlm.nih.gov/36989086"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.3c00192","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00192","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101877532","display_name":"Kailong Li","orcid":"https://orcid.org/0000-0003-0290-7004"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kailong Li","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010017304","display_name":"Lijun Quan","orcid":"https://orcid.org/0000-0003-4551-4198"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lijun Quan","raw_affiliation_strings":["Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":"https://orcid.org/0000-0003-4551-4198","affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","institution_ids":[]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071538499","display_name":"Yelu Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yelu Jiang","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076525932","display_name":"Hongjie Wu","orcid":"https://orcid.org/0000-0001-5921-8707"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongjie Wu","raw_affiliation_strings":["School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou 215009, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou 215009, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110701909","display_name":"Jian Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I180662265","display_name":"China Mobile (China)","ror":"https://ror.org/05gftfe97","country_code":"CN","type":"company","lineage":["https://openalex.org/I180662265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wu","raw_affiliation_strings":["China Mobile (Suzhou) Software Technology Co., Ltd., Suzhou 215000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Mobile (Suzhou) Software Technology Co., Ltd., Suzhou 215000, China","institution_ids":["https://openalex.org/I180662265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380453","display_name":"Yan Li","orcid":"https://orcid.org/0009-0000-9658-0545"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052635755","display_name":"Yiting Zhou","orcid":"https://orcid.org/0000-0002-0999-3833"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiting Zhou","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064852381","display_name":"Tingfang Wu","orcid":"https://orcid.org/0000-0001-8137-2436"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingfang Wu","raw_affiliation_strings":["Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":"https://orcid.org/0000-0001-8137-2436","affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","institution_ids":[]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061252858","display_name":"Qiang Lyu","orcid":"https://orcid.org/0000-0003-2371-835X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Lyu","raw_affiliation_strings":["Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","School of Computer Science and Technology, Soochow University, Suzhou 215006, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China","institution_ids":[]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou 215006, China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5010017304","https://openalex.org/A5061252858"],"corresponding_institution_ids":["https://openalex.org/I3923682"],"apc_list":null,"apc_paid":null,"fwci":1.9398,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87911577,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"63","issue":"7","first_page":"2251","last_page":"2262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.6997120380401611},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5875308513641357},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5733175277709961},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.541704535484314},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4814454913139343},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.44842982292175293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38842999935150146},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.334766149520874},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24945032596588135},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24375194311141968},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.21983695030212402}],"concepts":[{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.6997120380401611},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5875308513641357},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5733175277709961},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.541704535484314},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4814454913139343},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.44842982292175293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38842999935150146},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.334766149520874},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24945032596588135},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24375194311141968},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.21983695030212402},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.3c00192","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.3c00192","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36989086","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36989086","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2934420158","display_name":null,"funder_award_id":"BK20200856","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G4070125920","display_name":null,"funder_award_id":"62272335","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G739727963","display_name":null,"funder_award_id":"62002251","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1768303176","https://openalex.org/W1979201508","https://openalex.org/W1992450378","https://openalex.org/W2006192061","https://openalex.org/W2008708467","https://openalex.org/W2009015785","https://openalex.org/W2011658408","https://openalex.org/W2032087577","https://openalex.org/W2050000500","https://openalex.org/W2051210555","https://openalex.org/W2052033556","https://openalex.org/W2054954101","https://openalex.org/W2059942519","https://openalex.org/W2074105113","https://openalex.org/W2109444605","https://openalex.org/W2119636371","https://openalex.org/W2130479394","https://openalex.org/W2131474431","https://openalex.org/W2137167381","https://openalex.org/W2145080853","https://openalex.org/W2156876686","https://openalex.org/W2158714788","https://openalex.org/W2161922860","https://openalex.org/W2392351795","https://openalex.org/W2570083522","https://openalex.org/W2620760558","https://openalex.org/W2765910235","https://openalex.org/W2799876761","https://openalex.org/W2808043011","https://openalex.org/W2874062053","https://openalex.org/W2945669687","https://openalex.org/W2951433247","https://openalex.org/W2971405760","https://openalex.org/W2989747508","https://openalex.org/W3040724447","https://openalex.org/W3126876258","https://openalex.org/W3181971677","https://openalex.org/W3197696221","https://openalex.org/W3199607358","https://openalex.org/W4214544244","https://openalex.org/W4226208598","https://openalex.org/W4281294164","https://openalex.org/W4281790889"],"related_works":["https://openalex.org/W1970431511","https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W4390876228","https://openalex.org/W3192210502","https://openalex.org/W1569394480","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Identifying":[0],"the":[1,27,45,50,69,91,97,103,121,126,137,172,181,191,206],"binding":[2,168,176],"residues":[3],"of":[4,30,72,93,99,120,141,174,183,194,209],"protein-peptide":[5,73,155],"complexes":[6,74],"is":[7],"essential":[8],"for":[9,88],"understanding":[10],"protein":[11,32,51,76,143,184,211],"function":[12],"mechanisms":[13],"and":[14,52,77,96,125,144,185,213],"exploring":[15],"drug":[16],"discovery.":[17],"Recently,":[18],"many":[19],"computational":[20],"methods":[21,132,135,151,162],"have":[22],"been":[23],"developed":[24],"to":[25,36,67,189],"predict":[26,68],"interaction":[28,46,70,139,199],"sites":[29,47,71,140],"either":[31],"or":[33],"peptide.":[34],"However,":[35],"our":[37,130,150,161],"knowledge,":[38],"no":[39],"prediction":[40,173],"method":[41,64],"can":[42,152],"simultaneously":[43],"identify":[44],"on":[48,136],"both":[49,142],"peptide":[53,78,104,113,145,175,186,214],"sides.":[54,146],"Here,":[55],"we":[56,179],"propose":[57,83],"a":[58,84,117,210],"deep":[59],"graph":[60,187,195,212],"convolutional":[61],"network":[62],"(GCN)-based":[63],"called":[65],"GraphPPepIS":[66,108],"using":[75],"structural":[79,94,105],"information.":[80],"We":[81,115,147],"also":[82],"companion":[85],"method,":[86],"SeqPPepIS,":[87],"assisting":[89],"with":[90],"lack":[92],"information":[95],"flexibility":[98],"peptides.":[100],"SepPPepIS":[101],"replaces":[102],"features":[106,111],"in":[107,166,197],"by":[109],"learning":[110,192],"from":[112],"sequences.":[114],"performed":[116],"comprehensive":[118],"evaluation":[119],"benchmark":[122],"data":[123,159],"sets,":[124,160],"results":[127],"show":[128,148],"that":[129,149],"two":[131],"outperform":[133],"state-of-the-art":[134],"accurate":[138],"help":[153],"improve":[154],"docking.":[156],"For":[157],"docking":[158],"maintain":[163],"robust":[164],"performance":[165],"identifying":[167],"sites,":[169,200],"thereby":[170],"enhancing":[171],"poses.":[177],"Finally,":[178],"visualized":[180],"analysis":[182],"embedding":[188],"demonstrate":[190],"ability":[193],"convolution":[196],"predicting":[198],"which":[201],"was":[202],"mainly":[203],"obtained":[204],"through":[205],"shared":[207],"parameters":[208],"graph.":[215]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
