{"id":"https://openalex.org/W4323807713","doi":"https://doi.org/10.1021/acs.jcim.2c01219","title":"Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery","display_name":"Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery","publication_year":2023,"publication_date":"2023-03-10","ids":{"openalex":"https://openalex.org/W4323807713","doi":"https://doi.org/10.1021/acs.jcim.2c01219","pmid":"https://pubmed.ncbi.nlm.nih.gov/36897766"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c01219","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01219","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100340300","display_name":"Yuqi Zhang","orcid":"https://orcid.org/0000-0001-7532-5369"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuqi Zhang","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033754788","display_name":"M\u00e1rton Vass","orcid":"https://orcid.org/0000-0003-1486-0063"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marton Vass","raw_affiliation_strings":["Schr\u00f6dinger Technologies Limited, Nine Hills Road, Cambridge CB2 1GE, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Technologies Limited, Nine Hills Road, Cambridge CB2 1GE, United Kingdom","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005669125","display_name":"Da Shi","orcid":"https://orcid.org/0000-0002-1953-2299"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Da Shi","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059183000","display_name":"Esam T. Abualrous","orcid":"https://orcid.org/0000-0001-9582-9089"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Esam Abualrous","raw_affiliation_strings":["Schr\u00f6dinger GmbH, Gl\u00fccksteinallee 25, Mannheim 68159, Germany"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger GmbH, Gl\u00fccksteinallee 25, Mannheim 68159, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088125421","display_name":"Jennifer M. Chambers","orcid":null},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer M. Chambers","raw_affiliation_strings":["Schr\u00f6dinger Inc., 1540 Broadway, 24th Floor, New York, New York 10036, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 1540 Broadway, 24th Floor, New York, New York 10036, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029272282","display_name":"Nikita Chopra","orcid":null},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikita Chopra","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044257110","display_name":"Christopher Higgs","orcid":"https://orcid.org/0000-0003-1443-5809"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Higgs","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091647723","display_name":"Koushik Kasavajhala","orcid":null},"institutions":[{"id":"https://openalex.org/I1287339526","display_name":"Reserve Bank of India","ror":"https://ror.org/04w0b7z78","country_code":"IN","type":"other","lineage":["https://openalex.org/I1287339526"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Koushik Kasavajhala","raw_affiliation_strings":["Schr\u00f6dinger India Private Limited, No: #147, 3rd Floor, Jawaharlal Nehru Main Road, Channasandra 5th Stage Rajarajeswari Nagar, Above State Bank of India, Bengaluru, India 560098"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger India Private Limited, No: #147, 3rd Floor, Jawaharlal Nehru Main Road, Channasandra 5th Stage Rajarajeswari Nagar, Above State Bank of India, Bengaluru, India 560098","institution_ids":["https://openalex.org/I1287339526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029620967","display_name":"Hubert Li","orcid":null},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hubert Li","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022230930","display_name":"Prajwal P. Nandekar","orcid":"https://orcid.org/0000-0003-0210-9301"},"institutions":[{"id":"https://openalex.org/I1287339526","display_name":"Reserve Bank of India","ror":"https://ror.org/04w0b7z78","country_code":"IN","type":"other","lineage":["https://openalex.org/I1287339526"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prajwal Nandekar","raw_affiliation_strings":["Schr\u00f6dinger India Private Limited, No: #147, 3rd Floor, Jawaharlal Nehru Main Road, Channasandra 5th Stage Rajarajeswari Nagar, Above State Bank of India, Bengaluru, India 560098"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger India Private Limited, No: #147, 3rd Floor, Jawaharlal Nehru Main Road, Channasandra 5th Stage Rajarajeswari Nagar, Above State Bank of India, Bengaluru, India 560098","institution_ids":["https://openalex.org/I1287339526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038640614","display_name":"Hideyuki Sato","orcid":"https://orcid.org/0000-0002-5155-2003"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hideyuki Sato","raw_affiliation_strings":["Schr\u00f6dinger KK, 13F Marunouchi Trust Tower North, 1-8-1 Marunouchi, Chiyoda-ku, Tokyo 100-0005, Japan"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger KK, 13F Marunouchi Trust Tower North, 1-8-1 Marunouchi, Chiyoda-ku, Tokyo 100-0005, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067837830","display_name":"Edward B. Miller","orcid":"https://orcid.org/0000-0003-1590-5788"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward B. Miller","raw_affiliation_strings":["Schr\u00f6dinger Inc., 1540 Broadway, 24th Floor, New York, New York 10036, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 1540 Broadway, 24th Floor, New York, New York 10036, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004348015","display_name":"Matthew P. Repasky","orcid":"https://orcid.org/0000-0002-0259-7053"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew P. Repasky","raw_affiliation_strings":["Schr\u00f6dinger Inc., 101 SW Main Street, #1300, Portland, Oregon 97239, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 101 SW Main Street, #1300, Portland, Oregon 97239, United States","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088331520","display_name":"Steven V. Jerome","orcid":"https://orcid.org/0000-0001-7510-9682"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steven V. Jerome","raw_affiliation_strings":["Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger Inc., 9868 Scranton Road, Suite3200, San Diego, California 92121, United States","institution_ids":["https://openalex.org/I203455613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5088331520"],"corresponding_institution_ids":["https://openalex.org/I203455613"],"apc_list":null,"apc_paid":null,"fwci":21.043,"has_fulltext":false,"cited_by_count":110,"citation_normalized_percentile":{"value":0.99610273,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"63","issue":"6","first_page":"1656","last_page":"1667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7586395144462585},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6336126327514648},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6259752511978149},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5622591376304626},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.5308818817138672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44000911712646484},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.408347487449646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29465165734291077},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24495747685432434},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1417923867702484},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06340155005455017}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7586395144462585},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6336126327514648},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6259752511978149},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5622591376304626},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.5308818817138672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44000911712646484},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.408347487449646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29465165734291077},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24495747685432434},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1417923867702484},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06340155005455017},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005668","descriptor_name":"Furylfuramide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020648","descriptor_name":"Peptide Elongation Factor 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020648","descriptor_name":"Peptide Elongation Factor 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020648","descriptor_name":"Peptide Elongation Factor 1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.2c01219","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01219","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36897766","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36897766","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5299999713897705,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1968319881","https://openalex.org/W1985588649","https://openalex.org/W2009423060","https://openalex.org/W2025458374","https://openalex.org/W2031168104","https://openalex.org/W2042110087","https://openalex.org/W2079953901","https://openalex.org/W2112457863","https://openalex.org/W2129153475","https://openalex.org/W2157296083","https://openalex.org/W2323252543","https://openalex.org/W2327581403","https://openalex.org/W2330799739","https://openalex.org/W2342500021","https://openalex.org/W2794774007","https://openalex.org/W2911404893","https://openalex.org/W2912171584","https://openalex.org/W3004731690","https://openalex.org/W3005146385","https://openalex.org/W3029177955","https://openalex.org/W3036533652","https://openalex.org/W3083358089","https://openalex.org/W3093227781","https://openalex.org/W3114321016","https://openalex.org/W3148901627","https://openalex.org/W3151633358","https://openalex.org/W3154018702","https://openalex.org/W3177828909","https://openalex.org/W3179636787","https://openalex.org/W3183475563","https://openalex.org/W3186179742","https://openalex.org/W3199421765","https://openalex.org/W3201523286","https://openalex.org/W3202105508","https://openalex.org/W3208999135","https://openalex.org/W3217015076","https://openalex.org/W4206002704","https://openalex.org/W4206940890","https://openalex.org/W4224019836","https://openalex.org/W4226027101","https://openalex.org/W4229000770","https://openalex.org/W4231059664","https://openalex.org/W4252672146","https://openalex.org/W4280615389","https://openalex.org/W4286500588","https://openalex.org/W4292112379","https://openalex.org/W4293862436","https://openalex.org/W4294719059","https://openalex.org/W4310058955","https://openalex.org/W4313880353"],"related_works":["https://openalex.org/W3174709249","https://openalex.org/W2017055503","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2921092150","https://openalex.org/W2027065525","https://openalex.org/W2336040088","https://openalex.org/W4313855081"],"abstract_inverted_index":{"The":[0,14],"recently":[1],"developed":[2],"AlphaFold2":[3],"(AF2)":[4],"algorithm":[5],"predicts":[6],"proteins'":[7],"3D":[8],"structures":[9,53,68,75,90,103,118,169],"from":[10,54],"amino":[11],"acid":[12],"sequences.":[13],"open":[15],"AlphaFold":[16],"protein":[17],"structure":[18,47],"database":[19],"covers":[20],"the":[21,34,55,66,73,101,116,126,130],"complete":[22],"human":[23],"proteome.":[24],"Using":[25],"an":[26,45,109,120],"industry-leading":[27],"molecular":[28],"docking":[29,141],"method":[30],"(Glide),":[31],"we":[32,113],"investigated":[33],"virtual":[35,134],"screening":[36,135],"performance":[37,131],"of":[38,62,80,100,143],"37":[39],"common":[40],"drug":[41],"targets,":[42],"each":[43],"with":[44,163],"AF2":[46,67,74,117,168],"and":[48,51,166],"known":[49,81,122,144],"<i>holo</i>":[50,102],"<i>apo</i>":[52,89],"DUD-E":[56],"data":[57],"set.":[58],"In":[59],"a":[60],"subset":[61],"27":[63],"targets":[64],"where":[65],"are":[69],"suitable":[70],"for":[71,153,173],"refinement,":[72,167],"show":[76,170],"comparable":[77],"early":[78,98],"enrichment":[79,99],"active":[82],"compounds":[83],"(avg.":[84,91,104,136,158],"EF":[85,92,105,137,159],"1%:":[86,93,106,138],"13.0)":[87],"to":[88,128],"11.4)":[94],"while":[95],"falling":[96],"behind":[97],"24.2).":[107],"With":[108],"induced-fit":[110],"protocol":[111],"(IFD-MD),":[112],"can":[114,147],"refine":[115],"using":[119],"aligned":[121],"binding":[123,145],"ligand":[124],"as":[125,151],"template":[127],"improve":[129],"in":[132],"structure-based":[133],"18.9).":[139],"Glide-generated":[140],"poses":[142],"ligands":[146],"also":[148],"be":[149],"used":[150],"templates":[152],"IFD-MD,":[154],"achieving":[155],"similar":[156],"improvements":[157],"1%":[160],"18.0).":[161],"Thus,":[162],"proper":[164],"preparation":[165],"considerable":[171],"promise":[172],"<i>in":[174],"silico</i>":[175],"hit":[176],"identification.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":4}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
