{"id":"https://openalex.org/W4311574759","doi":"https://doi.org/10.1021/acs.jcim.2c01123","title":"Cumulative Millisecond-Long Sampling for a Comprehensive Energetic Evaluation of Aqueous Ionic Liquid Effects on Amino Acid Interactions","display_name":"Cumulative Millisecond-Long Sampling for a Comprehensive Energetic Evaluation of Aqueous Ionic Liquid Effects on Amino Acid Interactions","publication_year":2022,"publication_date":"2022-12-15","ids":{"openalex":"https://openalex.org/W4311574759","doi":"https://doi.org/10.1021/acs.jcim.2c01123","pmid":"https://pubmed.ncbi.nlm.nih.gov/36520535"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c01123","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01123","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044924539","display_name":"Till El Harrar","orcid":"https://orcid.org/0000-0002-2474-7614"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I4210113364","display_name":"John von Neumann Institute for Computing","ror":"https://ror.org/02zmk8084","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I1305996414","https://openalex.org/I1305996414","https://openalex.org/I169556180","https://openalex.org/I171892758","https://openalex.org/I2801876189","https://openalex.org/I4210113364"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Till El Harrar","raw_affiliation_strings":["Institute of Biotechnology, RWTH Aachen University, 52074 Aachen, Germany","John von Neumann Institute for Computing (NIC), J\u00fclich Supercomputing Centre (JSC), Institute of Biological Information Processing (IBI-7: Structural Biochemistry), and Institute of Bio- and Geosciences (IBG-4: Bioinformatics), Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2474-7614","affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, RWTH Aachen University, 52074 Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"John von Neumann Institute for Computing (NIC), J\u00fclich Supercomputing Centre (JSC), Institute of Biological Information Processing (IBI-7: Structural Biochemistry), and Institute of Bio- and Geosciences (IBG-4: Bioinformatics), Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I4210113364","https://openalex.org/I171892758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063949219","display_name":"Holger Gohlke","orcid":"https://orcid.org/0000-0001-8613-1447"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I4210113364","display_name":"John von Neumann Institute for Computing","ror":"https://ror.org/02zmk8084","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I1305996414","https://openalex.org/I1305996414","https://openalex.org/I169556180","https://openalex.org/I171892758","https://openalex.org/I2801876189","https://openalex.org/I4210113364"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Holger Gohlke","raw_affiliation_strings":["Institute for Pharmaceutical and Medicinal Chemistry, Heinrich Heine University D\u00fcsseldorf, 40225 D\u00fcsseldorf, Germany","John von Neumann Institute for Computing (NIC), J\u00fclich Supercomputing Centre (JSC), Institute of Biological Information Processing (IBI-7: Structural Biochemistry), and Institute of Bio- and Geosciences (IBG-4: Bioinformatics), Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8613-1447","affiliations":[{"raw_affiliation_string":"Institute for Pharmaceutical and Medicinal Chemistry, Heinrich Heine University D\u00fcsseldorf, 40225 D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]},{"raw_affiliation_string":"John von Neumann Institute for Computing (NIC), J\u00fclich Supercomputing Centre (JSC), Institute of Biological Information Processing (IBI-7: Structural Biochemistry), and Institute of Bio- and Geosciences (IBG-4: Bioinformatics), Forschungszentrum J\u00fclich GmbH, 52428 J\u00fclich, Germany","institution_ids":["https://openalex.org/I4210113364","https://openalex.org/I171892758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063949219"],"corresponding_institution_ids":["https://openalex.org/I171892758","https://openalex.org/I4210113364","https://openalex.org/I44260953"],"apc_list":null,"apc_paid":null,"fwci":0.1733,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49396944,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"63","issue":"1","first_page":"281","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10480","display_name":"Ionic liquids properties and applications","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1503","display_name":"Catalysis"},"field":{"id":"https://openalex.org/fields/15","display_name":"Chemical Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.6737744808197021},{"id":"https://openalex.org/keywords/ionic-liquid","display_name":"Ionic liquid","score":0.6542322635650635},{"id":"https://openalex.org/keywords/aqueous-solution","display_name":"Aqueous solution","score":0.6264362335205078},{"id":"https://openalex.org/keywords/intramolecular-force","display_name":"Intramolecular force","score":0.6237097382545471},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.6182054877281189},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.5965784192085266},{"id":"https://openalex.org/keywords/ion","display_name":"Ion","score":0.5525408983230591},{"id":"https://openalex.org/keywords/ionic-bonding","display_name":"Ionic bonding","score":0.5365327596664429},{"id":"https://openalex.org/keywords/potential-of-mean-force","display_name":"Potential of mean force","score":0.5307719111442566},{"id":"https://openalex.org/keywords/solvent","display_name":"Solvent","score":0.5299108028411865},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.47795987129211426},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.44614851474761963},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.437283456325531},{"id":"https://openalex.org/keywords/physical-chemistry","display_name":"Physical chemistry","score":0.2418767213821411},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.22364139556884766},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.16688719391822815}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6737744808197021},{"id":"https://openalex.org/C154881586","wikidata":"https://www.wikidata.org/wiki/Q898579","display_name":"Ionic liquid","level":3,"score":0.6542322635650635},{"id":"https://openalex.org/C184651966","wikidata":"https://www.wikidata.org/wiki/Q906356","display_name":"Aqueous solution","level":2,"score":0.6264362335205078},{"id":"https://openalex.org/C75079739","wikidata":"https://www.wikidata.org/wiki/Q1571801","display_name":"Intramolecular force","level":2,"score":0.6237097382545471},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.6182054877281189},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.5965784192085266},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.5525408983230591},{"id":"https://openalex.org/C2182769","wikidata":"https://www.wikidata.org/wiki/Q62500","display_name":"Ionic bonding","level":3,"score":0.5365327596664429},{"id":"https://openalex.org/C175634916","wikidata":"https://www.wikidata.org/wiki/Q17075777","display_name":"Potential of mean force","level":3,"score":0.5307719111442566},{"id":"https://openalex.org/C2780471494","wikidata":"https://www.wikidata.org/wiki/Q146505","display_name":"Solvent","level":2,"score":0.5299108028411865},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.47795987129211426},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.44614851474761963},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.437283456325531},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.2418767213821411},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.22364139556884766},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.16688719391822815},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D052578","descriptor_name":"Ionic Liquids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D052578","descriptor_name":"Ionic Liquids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D052578","descriptor_name":"Ionic Liquids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.2c01123","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01123","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36520535","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36520535","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.5299999713897705}],"awards":[{"id":"https://openalex.org/G1781492678","display_name":null,"funder_award_id":"34-EFRE-0300096","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7343883831","display_name":null,"funder_award_id":"031B0837A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7609599864","display_name":null,"funder_award_id":"INST 208/704-1 FUGG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":244,"referenced_works":["https://openalex.org/W14498347","https://openalex.org/W93532817","https://openalex.org/W104793819","https://openalex.org/W280694366","https://openalex.org/W1517798915","https://openalex.org/W1518891412","https://openalex.org/W1542613000","https://openalex.org/W1753746324","https://openalex.org/W1803719049","https://openalex.org/W1887984434","https://openalex.org/W1895528264","https://openalex.org/W1902389382","https://openalex.org/W1950159499","https://openalex.org/W1963523582","https://openalex.org/W1964579868","https://openalex.org/W1966655925","https://openalex.org/W1967820830","https://openalex.org/W1969189143","https://openalex.org/W1969510290","https://openalex.org/W1970310372","https://openalex.org/W1971074335","https://openalex.org/W1971174028","https://openalex.org/W1971317029","https://openalex.org/W1971724949","https://openalex.org/W1972442457","https://openalex.org/W1974214659","https://openalex.org/W1974327005","https://openalex.org/W1975168669","https://openalex.org/W1975727760","https://openalex.org/W1976161355","https://openalex.org/W1976214829","https://openalex.org/W1977324916","https://openalex.org/W1977902160","https://openalex.org/W1978469236","https://openalex.org/W1982185171","https://openalex.org/W1982709972","https://openalex.org/W1983425529","https://openalex.org/W1983729784","https://openalex.org/W1984666622","https://openalex.org/W1985371388","https://openalex.org/W1987333298","https://openalex.org/W1988081630","https://openalex.org/W1988127920","https://openalex.org/W1990277472","https://openalex.org/W1990886938","https://openalex.org/W1991017182","https://openalex.org/W1993395402","https://openalex.org/W1994558736","https://openalex.org/W1995715002","https://openalex.org/W1999636925","https://openalex.org/W2000827337","https://openalex.org/W2001501144","https://openalex.org/W2001607617","https://openalex.org/W2003220369","https://openalex.org/W2003949305","https://openalex.org/W2006100672","https://openalex.org/W2008742159","https://openalex.org/W2009688653","https://openalex.org/W2009987871","https://openalex.org/W2011079470","https://openalex.org/W2011806241","https://openalex.org/W2013030840","https://openalex.org/W2013169654","https://openalex.org/W2013534998","https://openalex.org/W2014798043","https://openalex.org/W2015517515","https://openalex.org/W2016331581","https://openalex.org/W2017020386","https://openalex.org/W2017130165","https://openalex.org/W2018872041","https://openalex.org/W2019637120","https://openalex.org/W2019657469","https://openalex.org/W2020561870","https://openalex.org/W2021044472","https://openalex.org/W2021543172","https://openalex.org/W2022023380","https://openalex.org/W2022923181","https://openalex.org/W2023490488","https://openalex.org/W2026395206","https://openalex.org/W2026698968","https://openalex.org/W2032853185","https://openalex.org/W2034185634","https://openalex.org/W2034928589","https://openalex.org/W2035266068","https://openalex.org/W2035672721","https://openalex.org/W2036634490","https://openalex.org/W2037468209","https://openalex.org/W2039833566","https://openalex.org/W2039855332","https://openalex.org/W2041393913","https://openalex.org/W2042259662","https://openalex.org/W2043738362","https://openalex.org/W2045777307","https://openalex.org/W2046379303","https://openalex.org/W2047730466","https://openalex.org/W2048963159","https://openalex.org/W2049562138","https://openalex.org/W2050681249","https://openalex.org/W2051551120","https://openalex.org/W2052592862","https://openalex.org/W2054525948","https://openalex.org/W2056049824","https://openalex.org/W2056591799","https://openalex.org/W2057220750","https://openalex.org/W2058498694","https://openalex.org/W2058915399","https://openalex.org/W2059671784","https://openalex.org/W2060229787","https://openalex.org/W2064142965","https://openalex.org/W2066281954","https://openalex.org/W2066546105","https://openalex.org/W2066590502","https://openalex.org/W2066690664","https://openalex.org/W2066695841","https://openalex.org/W2067174909","https://openalex.org/W2067452867","https://openalex.org/W2069453836","https://openalex.org/W2069677863","https://openalex.org/W2071090676","https://openalex.org/W2071263126","https://openalex.org/W2071467721","https://openalex.org/W2071654333","https://openalex.org/W2071938803","https://openalex.org/W2073575559","https://openalex.org/W2073600573","https://openalex.org/W2074050984","https://openalex.org/W2074246207","https://openalex.org/W2074623097","https://openalex.org/W2077416151","https://openalex.org/W2078144770","https://openalex.org/W2078629389","https://openalex.org/W2079604571","https://openalex.org/W2079704642","https://openalex.org/W2080112966","https://openalex.org/W2080796053","https://openalex.org/W2082488092","https://openalex.org/W2083981585","https://openalex.org/W2084773273","https://openalex.org/W2084933967","https://openalex.org/W2086800637","https://openalex.org/W2087181875","https://openalex.org/W2088329517","https://openalex.org/W2088488932","https://openalex.org/W2089101318","https://openalex.org/W2089258285","https://openalex.org/W2090154084","https://openalex.org/W2090188946","https://openalex.org/W2090285118","https://openalex.org/W2090750768","https://openalex.org/W2091559870","https://openalex.org/W2092387745","https://openalex.org/W2093017510","https://openalex.org/W2106140689","https://openalex.org/W2106320506","https://openalex.org/W2112837356","https://openalex.org/W2115339329","https://openalex.org/W2118270944","https://openalex.org/W2119781014","https://openalex.org/W2133458557","https://openalex.org/W2134731229","https://openalex.org/W2135469866","https://openalex.org/W2139842482","https://openalex.org/W2142268071","https://openalex.org/W2142621641","https://openalex.org/W2146035057","https://openalex.org/W2147993766","https://openalex.org/W2151413338","https://openalex.org/W2151658471","https://openalex.org/W2156903701","https://openalex.org/W2161876271","https://openalex.org/W2166028267","https://openalex.org/W2201713963","https://openalex.org/W2206846584","https://openalex.org/W2215919791","https://openalex.org/W2263196200","https://openalex.org/W2271357175","https://openalex.org/W2314373865","https://openalex.org/W2318039949","https://openalex.org/W2318249996","https://openalex.org/W2318276496","https://openalex.org/W2318503545","https://openalex.org/W2324047739","https://openalex.org/W2324095370","https://openalex.org/W2324111015","https://openalex.org/W2324430523","https://openalex.org/W2328479868","https://openalex.org/W2328723871","https://openalex.org/W2330263970","https://openalex.org/W2331743023","https://openalex.org/W2332712348","https://openalex.org/W2333829689","https://openalex.org/W2334920779","https://openalex.org/W2345895517","https://openalex.org/W2400080905","https://openalex.org/W2404280981","https://openalex.org/W2424516564","https://openalex.org/W2499456752","https://openalex.org/W2519684817","https://openalex.org/W2547316048","https://openalex.org/W2566971331","https://openalex.org/W2577570108","https://openalex.org/W2577769506","https://openalex.org/W2600916235","https://openalex.org/W2608898724","https://openalex.org/W2610396311","https://openalex.org/W2617784531","https://openalex.org/W2724186091","https://openalex.org/W2762042556","https://openalex.org/W2781823215","https://openalex.org/W2785884569","https://openalex.org/W2786469974","https://openalex.org/W2788000414","https://openalex.org/W2788196490","https://openalex.org/W2791597917","https://openalex.org/W2795627064","https://openalex.org/W2803202079","https://openalex.org/W2883075966","https://openalex.org/W2891410819","https://openalex.org/W2898771749","https://openalex.org/W2911343816","https://openalex.org/W2945218994","https://openalex.org/W2946873322","https://openalex.org/W2947793085","https://openalex.org/W2949582132","https://openalex.org/W2953135775","https://openalex.org/W2961433251","https://openalex.org/W2962951846","https://openalex.org/W2966155083","https://openalex.org/W2977063126","https://openalex.org/W2980132876","https://openalex.org/W3010633148","https://openalex.org/W3035815479","https://openalex.org/W3041614974","https://openalex.org/W3048619486","https://openalex.org/W3101299215","https://openalex.org/W3105288208","https://openalex.org/W3105643282","https://openalex.org/W3155253321","https://openalex.org/W3179411180","https://openalex.org/W4200346627","https://openalex.org/W4225479369","https://openalex.org/W4239445359","https://openalex.org/W4299419415","https://openalex.org/W4301454875"],"related_works":["https://openalex.org/W2002226878","https://openalex.org/W2072536863","https://openalex.org/W2352741502","https://openalex.org/W2166530799","https://openalex.org/W2912484274","https://openalex.org/W2074311840","https://openalex.org/W2352093165","https://openalex.org/W2383223347","https://openalex.org/W2378638929","https://openalex.org/W2066271730"],"abstract_inverted_index":{"The":[0],"interactions":[1,110,116,152,173],"of":[2,25,46,87,100,102,107,138,182,235],"amino":[3,29],"acid":[4,30],"side-chains":[5],"confer":[6],"diverse":[7],"energetic":[8,85,219],"contributions":[9],"and":[10,17,125,127,142,168,199,218,228],"physical":[11],"properties":[12],"to":[13,56,75,111],"a":[14,27,134,179],"protein\u2019s":[15,33],"stability":[16,34,48,227,241],"function.":[18],"Various":[19],"computational":[20,236],"tools":[21,237],"estimate":[22,239],"the":[23,32,44,84,96,119,161,202,216,232],"effect":[24],"changing":[26],"given":[28],"on":[31,36,89,133,160,225,243],"based":[35,132,242],"parametrized":[37,42],"(free)":[38,244],"energy":[39,52,245],"functions.":[40,246],"When":[41],"for":[43,59,221],"prediction":[45,233],"protein":[47,91,226,240],"in":[49,117,190],"water,":[50,118],"such":[51,62,172],"functions":[53],"can":[54,145],"lead":[55],"suboptimal":[57],"results":[58,130],"other":[60],"solvents,":[61],"as":[63],"ionic":[64,68],"liquids":[65,69],"(IL),":[66],"aqueous":[67],"(aIL),":[70],"or":[71,184,194],"salt":[72,143],"solutions.":[73],"However,":[74],"our":[76],"knowledge,":[77],"no":[78],"comprehensive":[79,98],"data":[80,212],"are":[81,131],"available":[82],"describing":[83],"effects":[86,198,224],"aIL":[88,123,141],"intramolecular":[90],"interactions.":[92],"Here,":[93],"we":[94],"present":[95],"most":[97],"set":[99],"potential":[101],"mean":[103],"force":[104],"(PMF)":[105],"profiles":[106],"pairwise":[108],"protein\u2013residue":[109],"date,":[112],"covering":[113],"50":[114],"relevant":[115,122],"two":[120],"biotechnologically":[121],"[BMIM/Cl]":[124],"[BMIM/TfO],":[126],"[Na/Cl].":[128],"These":[129,175],"cumulated":[135],"simulation":[136],"time":[137],">1":[139],"ms.":[140],"ions":[144],"weaken,":[146],"but":[147,205],"also":[148,206],"strengthen,":[149],"specific":[150],"residue":[151,162],"by":[153],"more":[154],"than":[155],"3":[156],"kcal":[157],"mol\u20131,":[158],"depending":[159],"pair,":[163],"residue\u2013residue":[164],"configuration,":[165],"participating":[166],"ions,":[167],"concentration,":[169],"necessitating":[170],"considering":[171],"specifically.":[174],"changes":[176,189],"originate":[177],"from":[178],"complex":[180,222],"interplay":[181],"competitive":[183],"cooperative":[185],"noncovalent":[186],"ion\u2013residue":[187],"interactions,":[188],"solvent":[191],"structural":[192],"dynamics,":[193],"unspecific":[195],"charge":[196],"screening":[197],"occur":[200],"at":[201,207,215],"contact":[203],"distance":[204],"larger,":[208],"solvent-separated":[209],"distances.":[210],"This":[211],"provide":[213],"explanations":[214],"atomistic":[217],"levels":[220],"IL":[223],"should":[229],"help":[230],"improve":[231],"accuracies":[234],"that":[238]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
