{"id":"https://openalex.org/W4310601875","doi":"https://doi.org/10.1021/acs.jcim.2c01064","title":"Multiscale Modeling of Phosphate\u00b7\u00b7\u00b7\u03c0 Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions","display_name":"Multiscale Modeling of Phosphate\u00b7\u00b7\u00b7\u03c0 Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions","publication_year":2022,"publication_date":"2022-12-01","ids":{"openalex":"https://openalex.org/W4310601875","doi":"https://doi.org/10.1021/acs.jcim.2c01064","pmid":"https://pubmed.ncbi.nlm.nih.gov/36454943"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c01064","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01064","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046085887","display_name":"Klaudia Mr\u00e0zikov\u00e0","orcid":"https://orcid.org/0000-0002-8285-4346"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Klaudia Mr\u00e1zikov\u00e1","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-8285-4346","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028117879","display_name":"Holger Kruse","orcid":"https://orcid.org/0000-0002-0560-1513"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Holger Kruse","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-0560-1513","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054472409","display_name":"Vojt\u011bch Ml\u00fdnsk\u00fd","orcid":"https://orcid.org/0000-0003-2769-1553"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vojt\u011bch Ml\u00fdnsk\u00fd","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-2769-1553","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049661679","display_name":"Pascal Auffinger","orcid":"https://orcid.org/0000-0002-3816-2721"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210128885","display_name":"Architecture et R\u00e9activit\u00e9 de l'arN","ror":"https://ror.org/03xmjtz19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210128885","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210158086","display_name":"Institut de Biologie Mol\u00e9culaire et Cellulaire","ror":"https://ror.org/05qpmg879","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210158086","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Pascal Auffinger","raw_affiliation_strings":["Architecture et R\u00e9activit\u00e9 de l\u2019ARN, Universit\u00e9 de Strasbourg, Institut de Biologie Mol\u00e9culaire et Cellulaire du CNRS, Strasbourg67084, France"],"raw_orcid":"https://orcid.org/0000-0002-3816-2721","affiliations":[{"raw_affiliation_string":"Architecture et R\u00e9activit\u00e9 de l\u2019ARN, Universit\u00e9 de Strasbourg, Institut de Biologie Mol\u00e9culaire et Cellulaire du CNRS, Strasbourg67084, France","institution_ids":["https://openalex.org/I4210128885","https://openalex.org/I4210158086","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026399646","display_name":"Ji\u0159\u0131\u0301 \u0160poner","orcid":"https://orcid.org/0000-0001-6558-6186"},"institutions":[{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Ji\u0159\u00ed \u0160poner","raw_affiliation_strings":["Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0001-6558-6186","affiliations":[{"raw_affiliation_string":"Institute of Biophysics of the Czech Academy of Sciences, Kr\u00e1lovopolsk\u00e1 135, 612 65Brno, Czech Republic","institution_ids":["https://openalex.org/I4210089928"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026399646","https://openalex.org/A5049661679"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210089928","https://openalex.org/I4210128885","https://openalex.org/I4210158086","https://openalex.org/I68947357"],"apc_list":null,"apc_paid":null,"fwci":0.0868,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.4440516,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"62","issue":"23","first_page":"6182","last_page":"6200"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleobase","display_name":"Nucleobase","score":0.9356113076210022},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.6497802734375},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.5901547074317932},{"id":"https://openalex.org/keywords/thiophosphate","display_name":"Thiophosphate","score":0.5331301689147949},{"id":"https://openalex.org/keywords/phosphate","display_name":"Phosphate","score":0.44833311438560486},{"id":"https://openalex.org/keywords/quantum-chemical","display_name":"Quantum chemical","score":0.43436193466186523},{"id":"https://openalex.org/keywords/quantum-chemistry","display_name":"Quantum chemistry","score":0.42819955945014954},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.42303597927093506},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.3975377380847931},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.35578101873397827},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.22887355089187622},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.18529674410820007},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15213912725448608},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.09486845135688782},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.08303454518318176},{"id":"https://openalex.org/keywords/supramolecular-chemistry","display_name":"Supramolecular chemistry","score":0.07431390881538391},{"id":"https://openalex.org/keywords/crystal-structure","display_name":"Crystal structure","score":0.07103386521339417}],"concepts":[{"id":"https://openalex.org/C61234307","wikidata":"https://www.wikidata.org/wiki/Q422960","display_name":"Nucleobase","level":3,"score":0.9356113076210022},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6497802734375},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.5901547074317932},{"id":"https://openalex.org/C2778278100","wikidata":"https://www.wikidata.org/wiki/Q6586307","display_name":"Thiophosphate","level":2,"score":0.5331301689147949},{"id":"https://openalex.org/C2777132085","wikidata":"https://www.wikidata.org/wiki/Q46220103","display_name":"Phosphate","level":2,"score":0.44833311438560486},{"id":"https://openalex.org/C2991951333","wikidata":"https://www.wikidata.org/wiki/Q188403","display_name":"Quantum chemical","level":3,"score":0.43436193466186523},{"id":"https://openalex.org/C22994065","wikidata":"https://www.wikidata.org/wiki/Q188403","display_name":"Quantum chemistry","level":4,"score":0.42819955945014954},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.42303597927093506},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.3975377380847931},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.35578101873397827},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.22887355089187622},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.18529674410820007},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15213912725448608},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.09486845135688782},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08303454518318176},{"id":"https://openalex.org/C93275456","wikidata":"https://www.wikidata.org/wiki/Q756449","display_name":"Supramolecular chemistry","level":3,"score":0.07431390881538391},{"id":"https://openalex.org/C115624301","wikidata":"https://www.wikidata.org/wiki/Q895901","display_name":"Crystal structure","level":2,"score":0.07103386521339417},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010710","descriptor_name":"Phosphates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.2c01064","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01064","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36454943","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36454943","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/6","score":0.4399999976158142,"display_name":"Clean water and sanitation"}],"awards":[{"id":"https://openalex.org/G3883693940","display_name":null,"funder_award_id":"CZ.02.1.01/0.0/0.0/15_003/0000477","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G4557154183","display_name":null,"funder_award_id":"20-16554S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":135,"referenced_works":["https://openalex.org/W142718297","https://openalex.org/W1504277857","https://openalex.org/W1963683620","https://openalex.org/W1969189143","https://openalex.org/W1976161355","https://openalex.org/W1980933072","https://openalex.org/W1981225934","https://openalex.org/W1982680051","https://openalex.org/W1985775264","https://openalex.org/W1987981639","https://openalex.org/W1988091937","https://openalex.org/W1988920524","https://openalex.org/W1993077801","https://openalex.org/W1994900806","https://openalex.org/W1995745181","https://openalex.org/W1997813693","https://openalex.org/W2007045536","https://openalex.org/W2008628207","https://openalex.org/W2009846017","https://openalex.org/W2015688756","https://openalex.org/W2025535606","https://openalex.org/W2026161183","https://openalex.org/W2028022118","https://openalex.org/W2029667189","https://openalex.org/W2030841140","https://openalex.org/W2032930812","https://openalex.org/W2034795880","https://openalex.org/W2036244779","https://openalex.org/W2037210960","https://openalex.org/W2038354555","https://openalex.org/W2039293281","https://openalex.org/W2039951296","https://openalex.org/W2046208971","https://openalex.org/W2046424037","https://openalex.org/W2049475242","https://openalex.org/W2049692419","https://openalex.org/W2051434435","https://openalex.org/W2054216276","https://openalex.org/W2055563809","https://openalex.org/W2058052041","https://openalex.org/W2058848030","https://openalex.org/W2059766312","https://openalex.org/W2060235409","https://openalex.org/W2062165147","https://openalex.org/W2066690664","https://openalex.org/W2069006374","https://openalex.org/W2077873773","https://openalex.org/W2078082523","https://openalex.org/W2081046982","https://openalex.org/W2092157292","https://openalex.org/W2092265729","https://openalex.org/W2092335677","https://openalex.org/W2093654118","https://openalex.org/W2096747776","https://openalex.org/W2099241248","https://openalex.org/W2104249079","https://openalex.org/W2106478835","https://openalex.org/W2120339119","https://openalex.org/W2122199548","https://openalex.org/W2124357718","https://openalex.org/W2125550178","https://openalex.org/W2131288855","https://openalex.org/W2131575287","https://openalex.org/W2132129663","https://openalex.org/W2134493054","https://openalex.org/W2136729627","https://openalex.org/W2143981217","https://openalex.org/W2145978627","https://openalex.org/W2147450337","https://openalex.org/W2152620792","https://openalex.org/W2160425716","https://openalex.org/W2169858698","https://openalex.org/W2278208043","https://openalex.org/W2286580685","https://openalex.org/W2320534486","https://openalex.org/W2323108859","https://openalex.org/W2324524889","https://openalex.org/W2337762266","https://openalex.org/W2345900741","https://openalex.org/W2394495819","https://openalex.org/W2441678298","https://openalex.org/W2500231039","https://openalex.org/W2503315900","https://openalex.org/W2523240039","https://openalex.org/W2550999879","https://openalex.org/W2563239084","https://openalex.org/W2567342479","https://openalex.org/W2567464267","https://openalex.org/W2601877136","https://openalex.org/W2605759800","https://openalex.org/W2607390045","https://openalex.org/W2613386458","https://openalex.org/W2739439285","https://openalex.org/W2764109108","https://openalex.org/W2766033847","https://openalex.org/W2782369838","https://openalex.org/W2790441008","https://openalex.org/W2804106780","https://openalex.org/W2805826204","https://openalex.org/W2874940187","https://openalex.org/W2890694976","https://openalex.org/W2891516097","https://openalex.org/W2902642334","https://openalex.org/W2913121738","https://openalex.org/W2923759574","https://openalex.org/W2951831607","https://openalex.org/W2969964726","https://openalex.org/W2997922939","https://openalex.org/W3012643535","https://openalex.org/W3016809710","https://openalex.org/W3024385728","https://openalex.org/W3030404274","https://openalex.org/W3033460114","https://openalex.org/W3035799311","https://openalex.org/W3087418727","https://openalex.org/W3087727766","https://openalex.org/W3093164608","https://openalex.org/W3105272336","https://openalex.org/W3105643282","https://openalex.org/W3108241769","https://openalex.org/W3125209651","https://openalex.org/W3133931590","https://openalex.org/W3157039760","https://openalex.org/W3159035029","https://openalex.org/W3202494474","https://openalex.org/W3209253740","https://openalex.org/W3217676662","https://openalex.org/W4211177379","https://openalex.org/W4221105045","https://openalex.org/W4224692227","https://openalex.org/W4238815903","https://openalex.org/W4282823888","https://openalex.org/W4284898036","https://openalex.org/W4285744851","https://openalex.org/W4295908960"],"related_works":["https://openalex.org/W2596900307","https://openalex.org/W4310601875","https://openalex.org/W2182243016","https://openalex.org/W2622591217","https://openalex.org/W2133477934","https://openalex.org/W2010723069","https://openalex.org/W2076773914","https://openalex.org/W2216692127","https://openalex.org/W2385868192","https://openalex.org/W2016365104"],"abstract_inverted_index":{"\u2192":[0],"\u03c0*":[1],"donation":[2],"effects.":[3],"We":[4],"also":[5],"investigated":[6],"thiophosphate\u00b7\u00b7\u00b7\u03c0":[7],"contacts":[8],"that":[9,24],"showed":[10],"reduced":[11],"stabilizing":[12],"interaction":[13],"energies":[14],"when":[15],"compared":[16],"to":[17],"phosphate\u00b7\u00b7\u00b7\u03c0":[18],"contacts.":[19],"Thus,":[20],"we":[21],"challenge":[22],"suggestions":[23],"the":[25],"experimentally":[26],"observed":[27],"enhanced":[28],"thermodynamic":[29],"stability":[30],"of":[31],"phosphorothioated":[32],"r(GNRA)":[33],"tetraloops":[34],"can":[35],"be":[36],"explained":[37],"by":[38],"larger":[39],"London":[40],"dispersion.":[41]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
