{"id":"https://openalex.org/W4297263351","doi":"https://doi.org/10.1021/acs.jcim.2c01034","title":"Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles","display_name":"Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles","publication_year":2022,"publication_date":"2022-09-27","ids":{"openalex":"https://openalex.org/W4297263351","doi":"https://doi.org/10.1021/acs.jcim.2c01034","pmid":"https://pubmed.ncbi.nlm.nih.gov/36166351"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c01034","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01034","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.2c01034","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066953584","display_name":"Quang-Hien Kha","orcid":null},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Quang-Hien Kha","raw_affiliation_strings":["International Master/Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Master/Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan","institution_ids":["https://openalex.org/I47519274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026899391","display_name":"Quang\u2010Thai Ho","orcid":"https://orcid.org/0000-0002-0227-3032"},"institutions":[{"id":"https://openalex.org/I177733328","display_name":"Can Tho University","ror":"https://ror.org/0071qz696","country_code":"VN","type":"education","lineage":["https://openalex.org/I177733328"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW","VN"],"is_corresponding":false,"raw_author_name":"Quang-Thai Ho","raw_affiliation_strings":["College of Information & Communication Technology, Can Tho University, Can Tho 90000, Viet Nam","Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 32003, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information & Communication Technology, Can Tho University, Can Tho 90000, Viet Nam","institution_ids":["https://openalex.org/I177733328"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 32003, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066420667","display_name":"Nguyen Quoc Khanh Le","orcid":"https://orcid.org/0000-0003-4896-7926"},"institutions":[{"id":"https://openalex.org/I2802331550","display_name":"Taipei Medical University Hospital","ror":"https://ror.org/03k0md330","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2802331550"]},{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Nguyen Quoc Khanh Le","raw_affiliation_strings":["Professional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei 106, Taiwan","Research Center for Artificial Intelligence in Medicine, Taipei Medical University, Taipei 106, Taiwan","Translational Imaging Research Center, Taipei Medical University Hospital, Taipei 110, Taiwan"],"raw_orcid":"https://orcid.org/0000-0003-4896-7926","affiliations":[{"raw_affiliation_string":"Professional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei 106, Taiwan","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Research Center for Artificial Intelligence in Medicine, Taipei Medical University, Taipei 106, Taiwan","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Translational Imaging Research Center, Taipei Medical University Hospital, Taipei 110, Taiwan","institution_ids":["https://openalex.org/I2802331550"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066420667"],"corresponding_institution_ids":["https://openalex.org/I2802331550","https://openalex.org/I47519274"],"apc_list":null,"apc_paid":null,"fwci":7.8982,"has_fulltext":false,"cited_by_count":93,"citation_normalized_percentile":{"value":0.98499975,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"62","issue":"19","first_page":"4820","last_page":"4826"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10617","display_name":"Cellular transport and secretion","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7316351532936096},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7303796410560608},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6851324439048767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6109195947647095},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5371373891830444},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48907238245010376},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.470468133687973},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42217424511909485},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13088610768318176}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7316351532936096},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7303796410560608},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6851324439048767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6109195947647095},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5371373891830444},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48907238245010376},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.470468133687973},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42217424511909485},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13088610768318176},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050600","descriptor_name":"SNARE Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050600","descriptor_name":"SNARE Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050600","descriptor_name":"SNARE Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.2c01034","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01034","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36166351","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36166351","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9554904","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9554904","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.2c01034","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01034","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.6299999952316284,"display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G5104784396","display_name":null,"funder_award_id":"MOST110-2221-E-038-001-MY2","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G6449865206","display_name":null,"funder_award_id":"MOST111-2628-E-038-002-MY3","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1481032119","https://openalex.org/W1516738772","https://openalex.org/W1525145973","https://openalex.org/W1971016259","https://openalex.org/W1976196055","https://openalex.org/W1984794455","https://openalex.org/W1996563400","https://openalex.org/W2000302106","https://openalex.org/W2027775552","https://openalex.org/W2039641203","https://openalex.org/W2048019766","https://openalex.org/W2056293200","https://openalex.org/W2068104499","https://openalex.org/W2077451533","https://openalex.org/W2101745615","https://openalex.org/W2101926813","https://openalex.org/W2107903949","https://openalex.org/W2114358087","https://openalex.org/W2114647945","https://openalex.org/W2136930152","https://openalex.org/W2146620899","https://openalex.org/W2147580225","https://openalex.org/W2147800946","https://openalex.org/W2148143831","https://openalex.org/W2153187042","https://openalex.org/W2158714788","https://openalex.org/W2161955763","https://openalex.org/W2171901005","https://openalex.org/W2306570595","https://openalex.org/W2334733312","https://openalex.org/W2620760558","https://openalex.org/W2739999456","https://openalex.org/W2793168264","https://openalex.org/W2807818025","https://openalex.org/W2889326414","https://openalex.org/W2909240409","https://openalex.org/W2910591656","https://openalex.org/W2917557027","https://openalex.org/W2919115771","https://openalex.org/W2947763854","https://openalex.org/W2964876911","https://openalex.org/W2966531260","https://openalex.org/W2987074689","https://openalex.org/W2999044305","https://openalex.org/W2999309192","https://openalex.org/W3036407082","https://openalex.org/W3037720781","https://openalex.org/W3091888877","https://openalex.org/W3126794060","https://openalex.org/W3184462297","https://openalex.org/W3196423873","https://openalex.org/W3209455776","https://openalex.org/W3216520818","https://openalex.org/W4200256832","https://openalex.org/W4211197456","https://openalex.org/W4221021072","https://openalex.org/W4297931361"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"It":[0],"is":[1],"truly":[2],"believed":[3],"that":[4],"our":[5],"model":[6],"can":[7],"contribute":[8],"to":[9],"the":[10],"discrimination":[11],"of":[12],"SNARE":[13],"proteins":[14],"and":[15],"general":[16],"proteins.":[17]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":45},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
