{"id":"https://openalex.org/W4306386100","doi":"https://doi.org/10.1021/acs.jcim.2c01008","title":"DeepBLI: A Transferable Multichannel Model for Detecting \u03b2-Lactamase-Inhibitor Interaction","display_name":"DeepBLI: A Transferable Multichannel Model for Detecting \u03b2-Lactamase-Inhibitor Interaction","publication_year":2022,"publication_date":"2022-10-17","ids":{"openalex":"https://openalex.org/W4306386100","doi":"https://doi.org/10.1021/acs.jcim.2c01008","pmid":"https://pubmed.ncbi.nlm.nih.gov/36245217"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c01008","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01008","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101401993","display_name":"Ruihan Dong","orcid":"https://orcid.org/0009-0001-5862-8410"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruihan Dong","raw_affiliation_strings":["Academy for Advanced Interdisciplinary Studies, Peking University, Beijing100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy for Advanced Interdisciplinary Studies, Peking University, Beijing100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081832999","display_name":"Hongpeng Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongpeng Yang","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Carolina, Columbia, South Carolina29208, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Carolina, Columbia, South Carolina29208, United States","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018156666","display_name":"Chengwei Ai","orcid":"https://orcid.org/0000-0003-1314-660X"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengwei Ai","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, Tianjin300350, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, Tianjin300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026877800","display_name":"Guihua Duan","orcid":"https://orcid.org/0000-0002-9406-6443"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guihua Duan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112879504","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha410083, China"],"raw_orcid":"https://orcid.org/0000-0003-2911-7643","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100438360","https://openalex.org/A5112879504"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":1.1934,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.8084216,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"62","issue":"22","first_page":"5830","last_page":"5840"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9580000042915344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.739066481590271},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.633236825466156},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5798212289810181},{"id":"https://openalex.org/keywords/rottlerin","display_name":"Rottlerin","score":0.5665338039398193},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5206222534179688},{"id":"https://openalex.org/keywords/fuse","display_name":"Fuse (electrical)","score":0.47268420457839966},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42441898584365845},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3336465358734131},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.27997517585754395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2508198022842407},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15486225485801697},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.139553964138031}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.739066481590271},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.633236825466156},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5798212289810181},{"id":"https://openalex.org/C2778769476","wikidata":"https://www.wikidata.org/wiki/Q7370686","display_name":"Rottlerin","level":4,"score":0.5665338039398193},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5206222534179688},{"id":"https://openalex.org/C141353440","wikidata":"https://www.wikidata.org/wiki/Q182221","display_name":"Fuse (electrical)","level":2,"score":0.47268420457839966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42441898584365845},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3336465358734131},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.27997517585754395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2508198022842407},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15486225485801697},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.139553964138031},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C195794163","wikidata":"https://www.wikidata.org/wiki/Q420877","display_name":"Protein kinase C","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065093","descriptor_name":"beta-Lactamase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D065093","descriptor_name":"beta-Lactamase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D065093","descriptor_name":"beta-Lactamase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.2c01008","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c01008","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36245217","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36245217","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8100000023841858,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2147514142","display_name":null,"funder_award_id":"62172296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2526488662","display_name":null,"funder_award_id":"2020YFA0908400","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G2554166542","display_name":null,"funder_award_id":"2022JJ20077","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1895007034","https://openalex.org/W1973454007","https://openalex.org/W1994144563","https://openalex.org/W2031165491","https://openalex.org/W2035585923","https://openalex.org/W2073060607","https://openalex.org/W2075951376","https://openalex.org/W2078050067","https://openalex.org/W2087064593","https://openalex.org/W2106986901","https://openalex.org/W2109991441","https://openalex.org/W2127287358","https://openalex.org/W2132629607","https://openalex.org/W2134967712","https://openalex.org/W2143874510","https://openalex.org/W2156125289","https://openalex.org/W2160599009","https://openalex.org/W2169678694","https://openalex.org/W2172057280","https://openalex.org/W2183050958","https://openalex.org/W2204695023","https://openalex.org/W2283934122","https://openalex.org/W2537924826","https://openalex.org/W2605952223","https://openalex.org/W2620605973","https://openalex.org/W2750547662","https://openalex.org/W2785947426","https://openalex.org/W2860192827","https://openalex.org/W2920302906","https://openalex.org/W2925800094","https://openalex.org/W2934139207","https://openalex.org/W2944226232","https://openalex.org/W2956769933","https://openalex.org/W2968620213","https://openalex.org/W2968734407","https://openalex.org/W2982066145","https://openalex.org/W2997021962","https://openalex.org/W2999791000","https://openalex.org/W3004469949","https://openalex.org/W3010821291","https://openalex.org/W3018980093","https://openalex.org/W3024945494","https://openalex.org/W3028589594","https://openalex.org/W3034627219","https://openalex.org/W3042826782","https://openalex.org/W3093397714","https://openalex.org/W3109916301","https://openalex.org/W3110636708","https://openalex.org/W3138412820","https://openalex.org/W3164716914","https://openalex.org/W3166613829","https://openalex.org/W3176821806","https://openalex.org/W3179283279","https://openalex.org/W3191666000","https://openalex.org/W3202227570","https://openalex.org/W3206585172","https://openalex.org/W3206937279","https://openalex.org/W4210307613","https://openalex.org/W4214530112","https://openalex.org/W4283167144","https://openalex.org/W4283219703"],"related_works":["https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W4402273478","https://openalex.org/W2594726310","https://openalex.org/W2355193834","https://openalex.org/W2013003323","https://openalex.org/W1981076832","https://openalex.org/W2024773645","https://openalex.org/W2001717001","https://openalex.org/W2043147644"],"abstract_inverted_index":{"Pathogens":[0],"producing":[1],"\u03b2-lactamase":[2,18,50,170],"pose":[3],"a":[4,42,55,88,177],"great":[5],"challenge":[6],"to":[7,15,117,155,190],"antibiotic-resistant":[8,191],"infection":[9],"treatment;":[10],"thus,":[11],"it":[12,138],"is":[13,26,33,153],"urgent":[14],"discover":[16],"novel":[17,43],"inhibitors":[19],"for":[20,49,82,160,166,185],"drug":[21,187],"development.":[22],"Conventional":[23],"high-throughput":[24],"screening":[25,32],"very":[27],"costly,":[28],"and":[29,61,74,80,85,97,108,130,163],"structure-based":[30],"virtual":[31],"limited":[34],"with":[35,54,104],"mechanisms.":[36],"In":[37],"this":[38],"study,":[39],"we":[40],"construct":[41],"multichannel":[44,101],"deep":[45],"neural":[46],"network":[47],"(DeepBLI)":[48],"inhibitor":[51,96,158],"screening,":[52],"pretrained":[53],"label":[56],"reversal":[57],"KIBA":[58],"data":[59],"set":[60],"fine-tuned":[62],"on":[63],"\u03b2-lactamase-inhibitor":[64,142],"pairs":[65,70],"from":[66],"BindingDB.":[67],"First,":[68],"the":[69,77,92,95,121,173],"of":[71,128,133,151,169,175],"encoders":[72],"(Conv":[73],"Att)":[75],"fuse":[76,103],"information":[78],"spatially":[79],"sequentially":[81],"both":[83],"enzymes":[84],"inhibitors.":[86],"Then,":[87],"co-attention":[89],"module":[90],"creates":[91],"connection":[93],"between":[94],"enzyme":[98],"embeddings.":[99],"Finally,":[100],"outputs":[102],"an":[105,126,131,149,182],"element-wise":[106],"product":[107],"then":[109],"are":[110],"fed":[111],"into":[112],"3-layer":[113],"fully":[114],"connected":[115],"networks":[116],"predict":[118],"interactions.":[119,143],"Comparing":[120],"state-of-the-art":[122],"methods,":[123],"DeepBLI":[124,152,180],"yields":[125],"AUROC":[127],"0.9240":[129],"AUPRC":[132],"0.9715,":[134],"which":[135],"indicates":[136],"that":[137],"can":[139],"identify":[140],"new":[141],"To":[144],"demonstrate":[145],"its":[146],"prediction":[147],"ability,":[148],"application":[150],"described":[154],"screen":[156],"potential":[157],"compounds":[159],"metallo-\u03b2-lactamase":[161],"AIM-1":[162],"repurpose":[164],"rottlerin":[165],"four":[167],"classes":[168],"targets,":[171],"showing":[172],"possibility":[174],"being":[176],"broad-spectrum":[178],"inhibitor.":[179],"provides":[181],"effective":[183],"way":[184],"antibacterial":[186],"development,":[188],"contributing":[189],"therapeutics.":[192]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
