{"id":"https://openalex.org/W4293046261","doi":"https://doi.org/10.1021/acs.jcim.2c00885","title":"Enhancing Protein Function Prediction Performance by Utilizing AlphaFold-Predicted Protein Structures","display_name":"Enhancing Protein Function Prediction Performance by Utilizing AlphaFold-Predicted Protein Structures","publication_year":2022,"publication_date":"2022-08-25","ids":{"openalex":"https://openalex.org/W4293046261","doi":"https://doi.org/10.1021/acs.jcim.2c00885","pmid":"https://pubmed.ncbi.nlm.nih.gov/36006049"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c00885","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00885","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083382988","display_name":"Wenjian Ma","orcid":"https://orcid.org/0000-0001-8725-1029"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Ma","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101822148","display_name":"Shugang Zhang","orcid":"https://orcid.org/0000-0002-9774-9709"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shugang Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China"],"raw_orcid":"https://orcid.org/0000-0002-9774-9709","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100680995","display_name":"Zhen Li","orcid":"https://orcid.org/0000-0001-5093-4221"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhen Li","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University, Qingdao 266071, China"],"raw_orcid":"https://orcid.org/0000-0001-5093-4221","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao 266071, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076937227","display_name":"Mingjian Jiang","orcid":"https://orcid.org/0000-0002-0716-5292"},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingjian Jiang","raw_affiliation_strings":["School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266033, China"],"raw_orcid":"https://orcid.org/0000-0002-0716-5292","affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266033, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375587","display_name":"Shuang Wang","orcid":"https://orcid.org/0000-0002-6779-9537"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Wang","raw_affiliation_strings":["College of Computer Science and Technology, China University of Petroleum (East China), Qingdao 266580, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum (East China), Qingdao 266580, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042115840","display_name":"Weigang Lu","orcid":"https://orcid.org/0000-0002-1767-5309"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weigang Lu","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075836788","display_name":"Xiangpeng Bi","orcid":"https://orcid.org/0000-0003-4712-0870"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangpeng Bi","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032230008","display_name":"Huasen Jiang","orcid":"https://orcid.org/0000-0001-6802-1017"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huasen Jiang","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043271142","display_name":"Henggui Zhang","orcid":"https://orcid.org/0000-0002-0863-5807"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Henggui Zhang","raw_affiliation_strings":["Biological Physics Group, School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, U.K","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Physics Group, School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, U.K","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China","institution_ids":["https://openalex.org/I4210113896"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079932099","display_name":"Zhiqiang Wei","orcid":"https://orcid.org/0000-0002-2830-8301"},"institutions":[{"id":"https://openalex.org/I4210113896","display_name":"Qingdao National Laboratory for Marine Science and Technology","ror":"https://ror.org/026sv7t11","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210113896"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wei","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"High Performance Computing Center, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China","institution_ids":["https://openalex.org/I4210113896"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101822148"],"corresponding_institution_ids":["https://openalex.org/I4210113896","https://openalex.org/I59028903"],"apc_list":null,"apc_paid":null,"fwci":4.9372,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.96618434,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"62","issue":"17","first_page":"4008","last_page":"4017"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.725662112236023},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6986939907073975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6939408183097839},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5861976146697998},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.5753438472747803},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5433801412582397},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.49215906858444214},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4398568570613861},{"id":"https://openalex.org/keywords/performance-prediction","display_name":"Performance prediction","score":0.43146252632141113},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4213048815727234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.374642550945282},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3290288746356964},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.22343745827674866},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.20064547657966614}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.725662112236023},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6986939907073975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6939408183097839},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5861976146697998},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.5753438472747803},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5433801412582397},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.49215906858444214},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4398568570613861},{"id":"https://openalex.org/C2777115002","wikidata":"https://www.wikidata.org/wiki/Q7168246","display_name":"Performance prediction","level":2,"score":0.43146252632141113},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4213048815727234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.374642550945282},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3290288746356964},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.22343745827674866},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.20064547657966614},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.2c00885","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00885","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36006049","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36006049","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3126391182","display_name":null,"funder_award_id":"SDBX2020003","funder_id":"https://openalex.org/F4320338074","funder_display_name":"Government of Shandong Province"},{"id":"https://openalex.org/G8142591626","display_name":null,"funder_award_id":"ZR2021MF011","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320338074","display_name":"Government of Shandong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W45836587","https://openalex.org/W1847116764","https://openalex.org/W1976526581","https://openalex.org/W1987254408","https://openalex.org/W2076048958","https://openalex.org/W2103017472","https://openalex.org/W2106612397","https://openalex.org/W2120615054","https://openalex.org/W2170463736","https://openalex.org/W2171602500","https://openalex.org/W2612252966","https://openalex.org/W2615066396","https://openalex.org/W2736403501","https://openalex.org/W2900674118","https://openalex.org/W2945297971","https://openalex.org/W2949867299","https://openalex.org/W2952710849","https://openalex.org/W2969996838","https://openalex.org/W2999044305","https://openalex.org/W3006973065","https://openalex.org/W3012555002","https://openalex.org/W3047995329","https://openalex.org/W3098011980","https://openalex.org/W3137047737","https://openalex.org/W3145946384","https://openalex.org/W3164046276","https://openalex.org/W3166142427","https://openalex.org/W3177828909","https://openalex.org/W3184615727","https://openalex.org/W3194145003","https://openalex.org/W3194218357","https://openalex.org/W3195570596","https://openalex.org/W3204490060","https://openalex.org/W3211795435","https://openalex.org/W4221055075","https://openalex.org/W4233861876","https://openalex.org/W4236358448"],"related_works":["https://openalex.org/W2593264178","https://openalex.org/W4311623193","https://openalex.org/W2043066834","https://openalex.org/W2185518315","https://openalex.org/W2181530468","https://openalex.org/W2039679484","https://openalex.org/W1504467230","https://openalex.org/W2129046747","https://openalex.org/W2171208795","https://openalex.org/W2257612465"],"abstract_inverted_index":{"The":[0],"structure":[1],"of":[2,6,28,36,45,72,100,152,164],"a":[3,51,80,87,91],"protein":[4,30,47,141,208],"is":[5],"great":[7],"importance":[8],"in":[9,160,206],"determining":[10,96],"its":[11,41],"functionality,":[12],"and":[13,40,57,89,117,132],"this":[14,55,76],"characteristic":[15],"can":[16,105],"be":[17,106],"leveraged":[18],"to":[19,54,63,189],"train":[20],"data-driven":[21],"prediction":[22,103,143],"models.":[23,38],"However,":[24],"the":[25,34,65,70,98,101,114,120,178,190],"limited":[26],"number":[27,71],"available":[29],"structures":[31,48,60,112,130,134,173,201],"severely":[32],"limits":[33],"performance":[35,67,99,121],"these":[37,58],"AlphaFold2":[39],"open-source":[42],"data":[43,82,150],"set":[44,83,116],"predicted":[46,59,172,200],"have":[49],"provided":[50],"promising":[52],"solution":[53],"problem,":[56],"are":[61],"expected":[62],"benefit":[64,146],"model":[66,104,156,179,191],"by":[68,108],"increasing":[69],"training":[73,115,149,175],"samples.":[74,176],"In":[75],"work,":[77],"we":[78],"constructed":[79],"new":[81],"that":[84,139,199],"acted":[85],"as":[86,174],"benchmark":[88],"implemented":[90],"state-of-the-art":[92],"structure-based":[93,140],"approach":[94],"for":[95],"whether":[97],"function":[102,142],"improved":[107,159],"putting":[109],"additional":[110],"AlphaFold-predicted":[111,133,153,183],"into":[113],"further":[118],"compared":[119],"differences":[122],"between":[123],"two":[124],"models":[125,144],"separately":[126],"trained":[127,180],"with":[128],"real":[129,196],"only":[131,181],"only.":[135],"Experimental":[136],"results":[137],"indicated":[138],"could":[145],"from":[147],"virtual":[148,184],"consisting":[151],"structures.":[154],"First,":[155],"performances":[157,188],"were":[158,202],"all":[161],"three":[162],"categories":[163],"Gene":[165],"Ontology":[166],"terms":[167],"(GO":[168],"terms)":[169],"after":[170],"adding":[171],"Second,":[177],"on":[182,193],"samples":[185],"achieved":[186],"comparable":[187],"based":[192],"experimentally":[194],"solved":[195],"structures,":[197],"suggesting":[198],"almost":[203],"equally":[204],"effective":[205],"predicting":[207],"functionality.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":13}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
