{"id":"https://openalex.org/W4289964347","doi":"https://doi.org/10.1021/acs.jcim.2c00757","title":"<i>ULYSSES</i>: An Efficient and Easy to Use Semiempirical Library for C++","display_name":"<i>ULYSSES</i>: An Efficient and Easy to Use Semiempirical Library for C++","publication_year":2022,"publication_date":"2022-08-05","ids":{"openalex":"https://openalex.org/W4289964347","doi":"https://doi.org/10.1021/acs.jcim.2c00757","pmid":"https://pubmed.ncbi.nlm.nih.gov/35930308"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c00757","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00757","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027223809","display_name":"Filipe Menezes","orcid":"https://orcid.org/0000-0002-7630-5447"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Filipe Menezes","raw_affiliation_strings":["Institute of Structural Biology, Helmholtz Zentrum Muenchen, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7630-5447","affiliations":[{"raw_affiliation_string":"Institute of Structural Biology, Helmholtz Zentrum Muenchen, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002943706","display_name":"Grzegorz M. Popowicz","orcid":"https://orcid.org/0000-0003-2818-7498"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Grzegorz M. Popowicz","raw_affiliation_strings":["Institute of Structural Biology, Helmholtz Zentrum Muenchen, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Structural Biology, Helmholtz Zentrum Muenchen, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002943706","https://openalex.org/A5027223809"],"corresponding_institution_ids":["https://openalex.org/I3018134672"],"apc_list":null,"apc_paid":null,"fwci":3.422,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.92657211,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"62","issue":"16","first_page":"3685","last_page":"3694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43756696581840515},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3608585000038147}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43756696581840515},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3608585000038147}],"mesh":[{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014732","descriptor_name":"Vibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014732","descriptor_name":"Vibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014732","descriptor_name":"Vibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.2c00757","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00757","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:35930308","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35930308","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:66025","is_oa":false,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66025","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J. Chem. Inf. Model. 62, 3685-3694 (2022)","raw_type":"Text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:66025","is_oa":false,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=66025","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J. Chem. Inf. Model. 62, 3685-3694 (2022)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.4699999988079071,"display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G963329485","display_name":null,"funder_award_id":"031L0268","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G986706297","display_name":null,"funder_award_id":"KK 5197901TS0","funder_id":"https://openalex.org/F4320323803","funder_display_name":"Bundesministerium f\u00fcr Wirtschaft und Energie"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323803","display_name":"Bundesministerium f\u00fcr Wirtschaft und Energie","ror":"https://ror.org/02vgg2808"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":149,"referenced_works":["https://openalex.org/W150175414","https://openalex.org/W173148493","https://openalex.org/W1504770578","https://openalex.org/W1521146734","https://openalex.org/W1558713869","https://openalex.org/W1708984004","https://openalex.org/W1964577547","https://openalex.org/W1965051938","https://openalex.org/W1968121361","https://openalex.org/W1968166922","https://openalex.org/W1969017960","https://openalex.org/W1969625288","https://openalex.org/W1972245594","https://openalex.org/W1973899958","https://openalex.org/W1976106600","https://openalex.org/W1977482735","https://openalex.org/W1978883530","https://openalex.org/W1981162632","https://openalex.org/W1982861043","https://openalex.org/W1986814683","https://openalex.org/W1987392154","https://openalex.org/W1988099534","https://openalex.org/W1988636074","https://openalex.org/W1990883786","https://openalex.org/W1993403967","https://openalex.org/W1994674330","https://openalex.org/W1997231673","https://openalex.org/W2000413114","https://openalex.org/W2000872531","https://openalex.org/W2004209657","https://openalex.org/W2004219401","https://openalex.org/W2005136695","https://openalex.org/W2005966380","https://openalex.org/W2006041360","https://openalex.org/W2007608151","https://openalex.org/W2008558900","https://openalex.org/W2008735595","https://openalex.org/W2010842201","https://openalex.org/W2011017628","https://openalex.org/W2011301426","https://openalex.org/W2012231377","https://openalex.org/W2012803168","https://openalex.org/W2013183108","https://openalex.org/W2017517197","https://openalex.org/W2018674598","https://openalex.org/W2019041895","https://openalex.org/W2019137491","https://openalex.org/W2019867440","https://openalex.org/W2021190358","https://openalex.org/W2021379729","https://openalex.org/W2022101724","https://openalex.org/W2022772618","https://openalex.org/W2023219314","https://openalex.org/W2025178360","https://openalex.org/W2025470258","https://openalex.org/W2026286713","https://openalex.org/W2028017987","https://openalex.org/W2028046413","https://openalex.org/W2035266068","https://openalex.org/W2037570317","https://openalex.org/W2038135746","https://openalex.org/W2041554618","https://openalex.org/W2041902442","https://openalex.org/W2044355358","https://openalex.org/W2044401465","https://openalex.org/W2045611631","https://openalex.org/W2046293961","https://openalex.org/W2047179880","https://openalex.org/W2049126122","https://openalex.org/W2050470003","https://openalex.org/W2050835665","https://openalex.org/W2051022330","https://openalex.org/W2051682290","https://openalex.org/W2055529982","https://openalex.org/W2057980421","https://openalex.org/W2064315657","https://openalex.org/W2064467571","https://openalex.org/W2065096041","https://openalex.org/W2065954260","https://openalex.org/W2067640711","https://openalex.org/W2068945097","https://openalex.org/W2071312077","https://openalex.org/W2071955309","https://openalex.org/W2073471248","https://openalex.org/W2073773252","https://openalex.org/W2077973224","https://openalex.org/W2078511427","https://openalex.org/W2078786624","https://openalex.org/W2078823941","https://openalex.org/W2080635178","https://openalex.org/W2081159460","https://openalex.org/W2081396007","https://openalex.org/W2083700484","https://openalex.org/W2089403525","https://openalex.org/W2091917610","https://openalex.org/W2092157292","https://openalex.org/W2092285329","https://openalex.org/W2094134296","https://openalex.org/W2094348316","https://openalex.org/W2096874988","https://openalex.org/W2099428582","https://openalex.org/W2106140689","https://openalex.org/W2108560279","https://openalex.org/W2111566361","https://openalex.org/W2114162221","https://openalex.org/W2114704115","https://openalex.org/W2118799089","https://openalex.org/W2120439575","https://openalex.org/W2123224804","https://openalex.org/W2127336290","https://openalex.org/W2130063521","https://openalex.org/W2132981561","https://openalex.org/W2147068386","https://openalex.org/W2147571602","https://openalex.org/W2149779504","https://openalex.org/W2151319417","https://openalex.org/W2153177903","https://openalex.org/W2158384190","https://openalex.org/W2159570720","https://openalex.org/W2160332416","https://openalex.org/W2170681123","https://openalex.org/W2323403662","https://openalex.org/W2323519269","https://openalex.org/W2325702925","https://openalex.org/W2419140033","https://openalex.org/W2464739138","https://openalex.org/W2524487874","https://openalex.org/W2587598315","https://openalex.org/W2614756434","https://openalex.org/W2734356283","https://openalex.org/W2754419863","https://openalex.org/W2767434082","https://openalex.org/W2807843198","https://openalex.org/W2901522725","https://openalex.org/W2911997094","https://openalex.org/W2932297636","https://openalex.org/W2949102516","https://openalex.org/W2951142763","https://openalex.org/W3004547850","https://openalex.org/W3005240181","https://openalex.org/W3027308092","https://openalex.org/W3048565185","https://openalex.org/W3083406432","https://openalex.org/W3104791385","https://openalex.org/W3175152832","https://openalex.org/W3177009667","https://openalex.org/W4244164891","https://openalex.org/W4244434127","https://openalex.org/W4251534019"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"is":[0,40,52,72,114,134],"equipped":[1,54],"with":[2,55],"a":[3],"large":[4],"set":[5],"of":[6,11,18,45,47,66,102,137],"different":[7],"semiempirical":[8],"models,":[9],"most":[10,34],"which":[12],"are":[13,31],"based":[14],"on":[15],"the":[16,43,90,100,109,122],"Neglect":[17],"Diatomic":[19],"Differential":[20],"Overlap":[21],"(NDDO)":[22],"approximation.":[23],"Empirical":[24],"corrections":[25],"for":[26,33,62,106,116,128],"dispersion":[27],"and":[28,74],"hydrogen":[29],"bonding":[30],"available":[32,73],"methods,":[35],"so":[36],"that":[37],"higher":[38],"quality":[39],"achieved":[41],"in":[42],"calculation":[44],"energies":[46],"nonbonded":[48,117],"complexes.":[49],"The":[50,132],"library":[51,133],"furthermore":[53],"geometry":[56],"optimization,":[57],"as":[58,60,78,80],"well":[59,79],"modules":[61],"calculating":[63],"molecular":[64,140],"properties":[65,84],"general":[67],"interest.":[68],"Ideal":[69],"gas":[70],"thermodynamics":[71],"allows":[75],"single":[76],"structure":[77],"conformer":[81],"(multistructure)":[82],"averaged":[83],"to":[85,92,99],"be":[86],"calculated.":[87],"We":[88],"offer":[89],"possibility":[91],"use":[93],"several":[94],"vibrational":[95],"partition":[96,123],"functions":[97],"according":[98],"nature":[101],"interactions":[103],"being":[104],"studied:":[105],"covalent":[107],"systems,":[108],"traditional":[110],"harmonic":[111],"oscillator":[112],"approximation":[113],"available;":[115],"complexes,":[118],"we":[119],"systematically":[120],"extended":[121],"function":[124],"proposed":[125],"by":[126],"Grimme":[127],"all":[129],"thermodynamic":[130],"functions.":[131],"also":[135],"capable":[136],"running":[138],"Born-Oppenheimer":[139],"dynamics.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
