{"id":"https://openalex.org/W4318023216","doi":"https://doi.org/10.1021/acs.jcim.2c00752","title":"Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K1","display_name":"Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K1","publication_year":2023,"publication_date":"2023-01-25","ids":{"openalex":"https://openalex.org/W4318023216","doi":"https://doi.org/10.1021/acs.jcim.2c00752","pmid":"https://pubmed.ncbi.nlm.nih.gov/36696962"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c00752","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00752","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.2c00752","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009528606","display_name":"Alessandro Nicoli","orcid":"https://orcid.org/0000-0001-6177-9749"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alessandro Nicoli","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6177-9749","affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044302726","display_name":"Franziska Haag","orcid":"https://orcid.org/0000-0003-4210-0475"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Franziska Haag","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4210-0475","affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015882197","display_name":"Patrick Marcinek","orcid":"https://orcid.org/0000-0003-4003-9308"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Marcinek","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053045883","display_name":"Ruiming He","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ruiming He","raw_affiliation_strings":["Department of Chemistry, Technical University of Munich, 85748Garching, Germany","Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Technical University of Munich, 85748Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048974414","display_name":"Johanna Krei\u00dfl","orcid":"https://orcid.org/0000-0002-5252-0409"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johanna Krei\u00dfl","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030117281","display_name":"J\u00f6rg Stein","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Stein","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003793114","display_name":"Alessandro Marchetto","orcid":"https://orcid.org/0000-0001-9857-4376"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alessandro Marchetto","raw_affiliation_strings":["Computational Biomedicine, Institute for Advanced Simulations (IAS)-5/Institute for Neuroscience and Medicine (INM)-9, Forschungszentrum J\u00fclich, 52428J\u00fclich, Germany","Department of Biology, Faculty of Mathematics, Computer Science and Natural Sciences, RWTH Aachen University, 52074Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biomedicine, Institute for Advanced Simulations (IAS)-5/Institute for Neuroscience and Medicine (INM)-9, Forschungszentrum J\u00fclich, 52428J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Department of Biology, Faculty of Mathematics, Computer Science and Natural Sciences, RWTH Aachen University, 52074Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045957482","display_name":"Andreas Dunkel","orcid":"https://orcid.org/0000-0002-4445-6144"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Dunkel","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4445-6144","affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045413165","display_name":"Thomas Hofmann","orcid":"https://orcid.org/0000-0003-4057-7165"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Hofmann","raw_affiliation_strings":["Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4057-7165","affiliations":[{"raw_affiliation_string":"Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016780517","display_name":"Dietmar Krautwurst","orcid":"https://orcid.org/0000-0002-3350-8682"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dietmar Krautwurst","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3350-8682","affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080989278","display_name":"Antonella Di Pizio","orcid":"https://orcid.org/0000-0002-8520-5165"},"institutions":[{"id":"https://openalex.org/I4210144923","display_name":"Leibniz-Institute for Food Systems Biology at the Technical University of Munich","ror":"https://ror.org/04sy7nb49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210144923"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Antonella Di Pizio","raw_affiliation_strings":["Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8520-5165","affiliations":[{"raw_affiliation_string":"Leibniz Institute for Food Systems Biology at the Technical University of Munich, 85354Freising, Germany","institution_ids":["https://openalex.org/I4210144923"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016780517","https://openalex.org/A5080989278"],"corresponding_institution_ids":["https://openalex.org/I4210144923"],"apc_list":null,"apc_paid":null,"fwci":3.6694,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.93411783,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"63","issue":"7","first_page":"2014","last_page":"2029"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10971","display_name":"Olfactory and Sensory Function Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2809","display_name":"Sensory Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11584","display_name":"Biochemical Analysis and Sensing Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/g-protein-coupled-receptor","display_name":"G protein-coupled receptor","score":0.8248850107192993},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.7085862755775452},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6848941445350647},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5915905237197876},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5099571943283081},{"id":"https://openalex.org/keywords/binding-pocket","display_name":"Binding pocket","score":0.49105000495910645},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4623260796070099},{"id":"https://openalex.org/keywords/molecular-model","display_name":"Molecular model","score":0.4171043038368225},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.3929581642150879},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.3648124933242798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25587189197540283},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19984760880470276},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11116179823875427}],"concepts":[{"id":"https://openalex.org/C135285700","wikidata":"https://www.wikidata.org/wiki/Q38173","display_name":"G protein-coupled receptor","level":3,"score":0.8248850107192993},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.7085862755775452},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6848941445350647},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5915905237197876},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5099571943283081},{"id":"https://openalex.org/C3020299119","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Binding pocket","level":3,"score":0.49105000495910645},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4623260796070099},{"id":"https://openalex.org/C178910836","wikidata":"https://www.wikidata.org/wiki/Q2196961","display_name":"Molecular model","level":2,"score":0.4171043038368225},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.3929581642150879},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.3648124933242798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25587189197540283},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19984760880470276},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11116179823875427},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009812","descriptor_name":"Odorants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009812","descriptor_name":"Odorants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009812","descriptor_name":"Odorants","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018035","descriptor_name":"Receptors, Odorant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019204","descriptor_name":"GTP-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019204","descriptor_name":"GTP-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019204","descriptor_name":"GTP-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1021/acs.jcim.2c00752","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00752","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:36696962","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36696962","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10091413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10091413","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10091413/pdf/ci2c00752.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1699352","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1699352","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"doi:10.18154/rwth-2023-02681","is_oa":true,"landing_page_url":"https://doi.org/10.18154/rwth-2023-02681","pdf_url":null,"source":{"id":"https://openalex.org/S4306401033","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.2c00752","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00752","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5318536780","display_name":null,"funder_award_id":"CA18133","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G560262387","display_name":null,"funder_award_id":"PI 1672/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":136,"referenced_works":["https://openalex.org/W817511805","https://openalex.org/W1534406401","https://openalex.org/W1603274157","https://openalex.org/W1603858169","https://openalex.org/W1607931568","https://openalex.org/W1622143472","https://openalex.org/W1638185552","https://openalex.org/W1766823670","https://openalex.org/W1936333617","https://openalex.org/W1964413617","https://openalex.org/W1968875336","https://openalex.org/W1969497210","https://openalex.org/W1971189614","https://openalex.org/W1974044359","https://openalex.org/W1975691556","https://openalex.org/W1984780717","https://openalex.org/W1985588649","https://openalex.org/W1986986500","https://openalex.org/W1988715808","https://openalex.org/W2011301426","https://openalex.org/W2011571922","https://openalex.org/W2013978625","https://openalex.org/W2022202243","https://openalex.org/W2029088347","https://openalex.org/W2029667189","https://openalex.org/W2030966943","https://openalex.org/W2035687084","https://openalex.org/W2044296969","https://openalex.org/W2061096795","https://openalex.org/W2069494674","https://openalex.org/W2082586732","https://openalex.org/W2085385227","https://openalex.org/W2086033868","https://openalex.org/W2086909056","https://openalex.org/W2093615982","https://openalex.org/W2096525273","https://openalex.org/W2097186487","https://openalex.org/W2097706568","https://openalex.org/W2097775366","https://openalex.org/W2099641023","https://openalex.org/W2100561975","https://openalex.org/W2102377211","https://openalex.org/W2102998045","https://openalex.org/W2106882534","https://openalex.org/W2109014958","https://openalex.org/W2109154308","https://openalex.org/W2110521618","https://openalex.org/W2111409971","https://openalex.org/W2115018134","https://openalex.org/W2115953524","https://openalex.org/W2120336439","https://openalex.org/W2123681603","https://openalex.org/W2128020846","https://openalex.org/W2139350288","https://openalex.org/W2142568927","https://openalex.org/W2146411229","https://openalex.org/W2148871843","https://openalex.org/W2151113568","https://openalex.org/W2153867853","https://openalex.org/W2161659751","https://openalex.org/W2161854299","https://openalex.org/W2184345326","https://openalex.org/W2267570377","https://openalex.org/W2296686360","https://openalex.org/W2319758165","https://openalex.org/W2336980211","https://openalex.org/W2416732823","https://openalex.org/W2552024303","https://openalex.org/W2581429909","https://openalex.org/W2584397067","https://openalex.org/W2593913939","https://openalex.org/W2622498065","https://openalex.org/W2724925522","https://openalex.org/W2740974286","https://openalex.org/W2768644299","https://openalex.org/W2777807685","https://openalex.org/W2789645382","https://openalex.org/W2790052641","https://openalex.org/W2790915059","https://openalex.org/W2793341067","https://openalex.org/W2797153631","https://openalex.org/W2798114923","https://openalex.org/W2799524357","https://openalex.org/W2803124416","https://openalex.org/W2808112656","https://openalex.org/W2809303314","https://openalex.org/W2901861471","https://openalex.org/W2907496293","https://openalex.org/W2908276937","https://openalex.org/W2923978339","https://openalex.org/W2940487181","https://openalex.org/W2945066357","https://openalex.org/W2952828268","https://openalex.org/W2966245357","https://openalex.org/W2969526607","https://openalex.org/W2970224096","https://openalex.org/W2970740744","https://openalex.org/W2982248313","https://openalex.org/W3005523598","https://openalex.org/W3014501695","https://openalex.org/W3015646381","https://openalex.org/W3030632407","https://openalex.org/W3042198040","https://openalex.org/W3045948767","https://openalex.org/W3047618975","https://openalex.org/W3083406432","https://openalex.org/W3092494563","https://openalex.org/W3092543794","https://openalex.org/W3100571307","https://openalex.org/W3110608978","https://openalex.org/W3121001695","https://openalex.org/W3165741751","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3186179742","https://openalex.org/W3200653339","https://openalex.org/W3201539868","https://openalex.org/W3208273679","https://openalex.org/W3211795435","https://openalex.org/W3215667082","https://openalex.org/W4200127861","https://openalex.org/W4210314446","https://openalex.org/W4210629402","https://openalex.org/W4213094864","https://openalex.org/W4223956519","https://openalex.org/W4224126566","https://openalex.org/W4229000770","https://openalex.org/W4234797890","https://openalex.org/W4283738320","https://openalex.org/W4289336060","https://openalex.org/W4292458166","https://openalex.org/W4308463927","https://openalex.org/W4309681892","https://openalex.org/W4313455866","https://openalex.org/W4323807713","https://openalex.org/W4324344258"],"related_works":["https://openalex.org/W2130031978","https://openalex.org/W2090149287","https://openalex.org/W3043724143","https://openalex.org/W3197423116","https://openalex.org/W2336465572","https://openalex.org/W2167086539","https://openalex.org/W2399953650","https://openalex.org/W1966343877","https://openalex.org/W2423377342","https://openalex.org/W1974734322"],"abstract_inverted_index":{".":[0],"Experimental":[1],"data":[2,56],"was":[3],"used":[4,44],"to":[5,45,83,93,108,126],"guide":[6],"the":[7,10,17,31,47,72,110],"investigation":[8],"of":[9,13,75,114,120],"binding":[11,19,48,112],"modes":[12],"OR5K1":[14],"ligands":[15],"into":[16],"orthosteric":[18,111],"site":[20,49,113],"using":[21],"structural":[22,95],"information":[23],"from":[24,37],"AI-driven":[25],"modeling,":[26],"as":[27,116,118],"recently":[28],"released":[29],"in":[30,90],"AlphaFold":[32],"Protein":[33],"Structure":[34],"Database,":[35],"and":[36,62,86],"homology":[38],"modeling.":[39],"Induced-fit":[40],"docking":[41],"simulations":[42],"were":[43],"sample":[46],"conformational":[50],"space":[51],"for":[52],"ensemble":[53],"docking.":[54],"Mutagenesis":[55],"guided":[57],"side":[58],"chain":[59],"residue":[60],"sampling":[61],"model":[63,101,109],"selection.":[64],"We":[65],"obtained":[66],"models":[67,85],"that":[68,104,119],"could":[69],"better":[70],"rationalize":[71],"different":[73],"activity":[74,91],"active":[76],"(agonist)":[77],"versus":[78],"inactive":[79],"molecules":[80],"with":[81,122],"respect":[82],"starting":[84],"also":[87],"capture":[88],"differences":[89],"related":[92],"minor":[94],"differences.":[96],"Therefore,":[97],"we":[98],"provide":[99],"a":[100],"refinement":[102],"protocol":[103],"can":[105],"be":[106],"applied":[107],"ORs":[115],"well":[117],"GPCRs":[121],"low":[123],"sequence":[124],"identity":[125],"available":[127],"templates.":[128]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2023-01-26T00:00:00"}
