{"id":"https://openalex.org/W4224950025","doi":"https://doi.org/10.1021/acs.jcim.2c00241","title":"Expanding the Accessible Chemical Space of SIRT2 Inhibitors through Exploration of Binding Pocket Dynamics","display_name":"Expanding the Accessible Chemical Space of SIRT2 Inhibitors through Exploration of Binding Pocket Dynamics","publication_year":2022,"publication_date":"2022-04-25","ids":{"openalex":"https://openalex.org/W4224950025","doi":"https://doi.org/10.1021/acs.jcim.2c00241","pmid":"https://pubmed.ncbi.nlm.nih.gov/35467856"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.2c00241","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00241","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7781994","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057385612","display_name":"Nemanja Djokovi\u0107","orcid":"https://orcid.org/0000-0001-9972-3492"},"institutions":[{"id":"https://openalex.org/I4068193","display_name":"University of Belgrade","ror":"https://ror.org/02qsmb048","country_code":"RS","type":"education","lineage":["https://openalex.org/I4068193"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Nemanja Djokovic","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia"],"raw_orcid":"https://orcid.org/0000-0001-9972-3492","affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia","institution_ids":["https://openalex.org/I4068193"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087886159","display_name":"Du\u0161an Ru\u017ei\u0107","orcid":"https://orcid.org/0000-0002-0546-8265"},"institutions":[{"id":"https://openalex.org/I4068193","display_name":"University of Belgrade","ror":"https://ror.org/02qsmb048","country_code":"RS","type":"education","lineage":["https://openalex.org/I4068193"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Dusan Ruzic","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia"],"raw_orcid":"https://orcid.org/0000-0002-0546-8265","affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia","institution_ids":["https://openalex.org/I4068193"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084505150","display_name":"Minna Rahnasto\u2010Rilla","orcid":null},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Minna Rahnasto-Rilla","raw_affiliation_strings":["School of Pharmacy, University of Eastern Finland, P.O. Box 1627, 70210 Kuopio, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Pharmacy, University of Eastern Finland, P.O. Box 1627, 70210 Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049064278","display_name":"Tatjana Srdi\u0107\u2010Raji\u0107","orcid":"https://orcid.org/0000-0001-9840-6970"},"institutions":[{"id":"https://openalex.org/I4210106714","display_name":"Oncology Institute of Vojvodina","ror":"https://ror.org/0194xa029","country_code":"RS","type":"facility","lineage":["https://openalex.org/I4210106714"]}],"countries":["RS"],"is_corresponding":false,"raw_author_name":"Tatjana Srdic-Rajic","raw_affiliation_strings":["Department of Experimental Oncology, Institute for Oncology and Radiology of Serbia, Pasterova 14, 11000 Belgrade, Serbia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Experimental Oncology, Institute for Oncology and Radiology of Serbia, Pasterova 14, 11000 Belgrade, Serbia","institution_ids":["https://openalex.org/I4210106714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076332422","display_name":"Maija Lahtela\u2010Kakkonen","orcid":"https://orcid.org/0000-0001-7163-7728"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Maija Lahtela-Kakkonen","raw_affiliation_strings":["School of Pharmacy, University of Eastern Finland, P.O. Box 1627, 70210 Kuopio, Finland"],"raw_orcid":"https://orcid.org/0000-0001-7163-7728","affiliations":[{"raw_affiliation_string":"School of Pharmacy, University of Eastern Finland, P.O. Box 1627, 70210 Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044944147","display_name":"Katarina Nikoli\u0107","orcid":"https://orcid.org/0000-0002-3656-9245"},"institutions":[{"id":"https://openalex.org/I4068193","display_name":"University of Belgrade","ror":"https://ror.org/02qsmb048","country_code":"RS","type":"education","lineage":["https://openalex.org/I4068193"]}],"countries":["RS"],"is_corresponding":true,"raw_author_name":"Katarina Nikolic","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia"],"raw_orcid":"https://orcid.org/0000-0002-3656-9245","affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11221 Belgrade, Serbia","institution_ids":["https://openalex.org/I4068193"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5044944147","https://openalex.org/A5076332422"],"corresponding_institution_ids":["https://openalex.org/I175532246","https://openalex.org/I4068193"],"apc_list":null,"apc_paid":null,"fwci":1.5497,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.80622463,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"62","issue":"10","first_page":"2571","last_page":"2585"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11809","display_name":"Advanced NMR Techniques and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sirt2","display_name":"SIRT2","score":0.9401741027832031},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.6788533926010132},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6380693912506104},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5542640686035156},{"id":"https://openalex.org/keywords/rational-design","display_name":"Rational design","score":0.5289098024368286},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5267314910888672},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.4908340573310852},{"id":"https://openalex.org/keywords/drug-design","display_name":"Drug design","score":0.45303428173065186},{"id":"https://openalex.org/keywords/sirtuin","display_name":"Sirtuin","score":0.4356393814086914},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.39529260993003845},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37462514638900757},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.35077357292175293},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.24872875213623047},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21698763966560364},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13955745100975037},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.10172855854034424},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09514522552490234}],"concepts":[{"id":"https://openalex.org/C199848840","wikidata":"https://www.wikidata.org/wiki/Q18036605","display_name":"SIRT2","level":5,"score":0.9401741027832031},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.6788533926010132},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6380693912506104},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5542640686035156},{"id":"https://openalex.org/C53105671","wikidata":"https://www.wikidata.org/wiki/Q14777816","display_name":"Rational design","level":2,"score":0.5289098024368286},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5267314910888672},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.4908340573310852},{"id":"https://openalex.org/C192071366","wikidata":"https://www.wikidata.org/wiki/Q2991682","display_name":"Drug design","level":2,"score":0.45303428173065186},{"id":"https://openalex.org/C2780561631","wikidata":"https://www.wikidata.org/wiki/Q421331","display_name":"Sirtuin","level":4,"score":0.4356393814086914},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.39529260993003845},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37462514638900757},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.35077357292175293},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.24872875213623047},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21698763966560364},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13955745100975037},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.10172855854034424},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09514522552490234},{"id":"https://openalex.org/C75520062","wikidata":"https://www.wikidata.org/wiki/Q15321392","display_name":"NAD+ kinase","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056565","descriptor_name":"Sirtuin 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056565","descriptor_name":"Sirtuin 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056565","descriptor_name":"Sirtuin 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.2c00241","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.2c00241","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:35467856","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35467856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:zenodo.org:7781994","is_oa":true,"landing_page_url":"https://zenodo.org/record/7781994","pdf_url":"https://zenodo.org/record/7781994","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model 62(10) 2571-2585","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:farfar.pharmacy.bg.ac.rs:123456789/4102","is_oa":false,"landing_page_url":"https://farfar.pharmacy.bg.ac.rs/handle/123456789/4102","pdf_url":null,"source":{"id":"https://openalex.org/S4306402647","display_name":"FarFar (University of Belgrade, Faculty of Chemistry (Belgrade, Serbia))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210101313","host_organization_name":"University Hospital Center Dr Dragi\u0161a Mi\u0161ovi\u0107","host_organization_lineage":["https://openalex.org/I4210101313"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7781994","is_oa":true,"landing_page_url":"https://zenodo.org/record/7781994","pdf_url":"https://zenodo.org/record/7781994","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model 62(10) 2571-2585","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1314874776","display_name":null,"funder_award_id":"CM1406","funder_id":"https://openalex.org/F4320320366","funder_display_name":"European Cooperation in Science and Technology"},{"id":"https://openalex.org/G3631376389","display_name":null,"funder_award_id":"451-03-9/2021-14/20016","funder_id":"https://openalex.org/F4320322729","funder_display_name":"Ministarstvo Prosvete, Nauke i Tehnolo\u0161kog Razvoja"}],"funders":[{"id":"https://openalex.org/F4320320366","display_name":"European Cooperation in Science and Technology","ror":"https://ror.org/01bstzn19"},{"id":"https://openalex.org/F4320322729","display_name":"Ministarstvo Prosvete, Nauke i Tehnolo\u0161kog Razvoja","ror":"https://ror.org/01znas443"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224950025.pdf"},"referenced_works_count":100,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1505195648","https://openalex.org/W1964031294","https://openalex.org/W1965807511","https://openalex.org/W1968132748","https://openalex.org/W1968319881","https://openalex.org/W1969709762","https://openalex.org/W1981549228","https://openalex.org/W1988567641","https://openalex.org/W1991782854","https://openalex.org/W1994729757","https://openalex.org/W1997772366","https://openalex.org/W2013226867","https://openalex.org/W2020531899","https://openalex.org/W2024551271","https://openalex.org/W2026418335","https://openalex.org/W2029667189","https://openalex.org/W2034809644","https://openalex.org/W2056211671","https://openalex.org/W2058181174","https://openalex.org/W2060433756","https://openalex.org/W2065283382","https://openalex.org/W2066951434","https://openalex.org/W2067718414","https://openalex.org/W2070753604","https://openalex.org/W2070756053","https://openalex.org/W2087497962","https://openalex.org/W2094902533","https://openalex.org/W2097153041","https://openalex.org/W2109154308","https://openalex.org/W2111917512","https://openalex.org/W2114918609","https://openalex.org/W2120608933","https://openalex.org/W2127927539","https://openalex.org/W2128572087","https://openalex.org/W2143592395","https://openalex.org/W2146411229","https://openalex.org/W2155159115","https://openalex.org/W2159675211","https://openalex.org/W2160903751","https://openalex.org/W2165105249","https://openalex.org/W2165565773","https://openalex.org/W2165779834","https://openalex.org/W2170711116","https://openalex.org/W2197446758","https://openalex.org/W2204075485","https://openalex.org/W2211683704","https://openalex.org/W2265800909","https://openalex.org/W2271736303","https://openalex.org/W2291790445","https://openalex.org/W2315297180","https://openalex.org/W2327581403","https://openalex.org/W2330799739","https://openalex.org/W2342953417","https://openalex.org/W2343614482","https://openalex.org/W2345950567","https://openalex.org/W2405840972","https://openalex.org/W2467283743","https://openalex.org/W2530847795","https://openalex.org/W2534785808","https://openalex.org/W2567204400","https://openalex.org/W2570547882","https://openalex.org/W2581052095","https://openalex.org/W2604971487","https://openalex.org/W2605604484","https://openalex.org/W2606461366","https://openalex.org/W2609589855","https://openalex.org/W2739264716","https://openalex.org/W2739439285","https://openalex.org/W2756562465","https://openalex.org/W2779060209","https://openalex.org/W2792831431","https://openalex.org/W2802098404","https://openalex.org/W2803284534","https://openalex.org/W2808791482","https://openalex.org/W2886279431","https://openalex.org/W2896638470","https://openalex.org/W2901068426","https://openalex.org/W2906067435","https://openalex.org/W2910265810","https://openalex.org/W2921974962","https://openalex.org/W2970740744","https://openalex.org/W2975651250","https://openalex.org/W2982878631","https://openalex.org/W2990119608","https://openalex.org/W3010340553","https://openalex.org/W3033869790","https://openalex.org/W3084314445","https://openalex.org/W3087068219","https://openalex.org/W3092604410","https://openalex.org/W3100519644","https://openalex.org/W3115142961","https://openalex.org/W3119444589","https://openalex.org/W3130013170","https://openalex.org/W3130455724","https://openalex.org/W3157935191","https://openalex.org/W3213031280","https://openalex.org/W4205247155","https://openalex.org/W4231415818","https://openalex.org/W4250618045"],"related_works":["https://openalex.org/W2227804297","https://openalex.org/W4211130151","https://openalex.org/W1823374409","https://openalex.org/W1579826661","https://openalex.org/W2084490228","https://openalex.org/W2332317340","https://openalex.org/W3112665997","https://openalex.org/W3004977503","https://openalex.org/W3004647542","https://openalex.org/W3083193124"],"abstract_inverted_index":{"Considerations":[0],"of":[1,7,11,15,18,30,34,40,53,72,94,104,123,138,146,172,212,218],"binding":[2,76,141],"pocket":[3,41,77,125,142],"dynamics":[4,78,92],"are":[5],"one":[6],"the":[8,12,28,35,54,67,83,130,139,144,169,173,199,206,219,227],"crucial":[9],"aspects":[10],"rational":[13],"design":[14,115],"binders.":[16],"Identification":[17],"alternative":[19,135],"conformational":[20,55,136,153],"states":[21,56,137,154,158],"or":[22],"cryptic":[23,148],"subpockets":[24],"could":[25],"lead":[26],"to":[27,50,114],"discovery":[29,60],"completely":[31],"novel":[32],"groups":[33],"ligands.":[36],"However,":[37],"experimental":[38],"characterization":[39],"dynamics,":[42],"besides":[43],"being":[44],"expensive,":[45],"may":[46],"not":[47],"be":[48],"able":[49],"elucidate":[51],"all":[52],"relevant":[57],"for":[58,69,120,180,208,242],"drug":[59],"projects.":[61],"In":[62],"this":[63],"study,":[64],"we":[65],"propose":[66],"protocol":[68,202],"computational":[70],"simulations":[71,93,128],"sirtuin":[73],"2":[74],"(SIRT2)":[75],"and":[79,143,187,193,203,210],"its":[80,213],"integration":[81],"into":[82],"structure-based":[84],"virtual":[85],"screening":[86],"(SBVS)":[87],"pipeline.":[88],"Initially,":[89],"unbiased":[90],"molecular":[91],"SIRT2:inhibitor":[95],"complexes":[96],"were":[97,178,189,224],"performed":[98],"using":[99],"optimized":[100],"force":[101],"field":[102],"parameters":[103],"SIRT2":[105,124,140,152,174,195],"inhibitors.":[106],"Time-lagged":[107],"independent":[108],"component":[109],"analysis":[110],"(tICA)":[111],"was":[112],"used":[113],"pocket-related":[116],"collective":[117],"variables":[118],"(CVs)":[119],"enhanced":[121],"sampling":[122],"dynamics.":[126],"Metadynamics":[127],"in":[129,159,181,200],"tICA":[131],"eigenvector":[132],"space":[133,177],"revealed":[134],"existence":[145],"a":[147,238],"subpocket.":[149],"Newly":[150],"identified":[151,190],"outperformed":[155],"experimentally":[156],"resolved":[157],"retrospective":[160],"SBVS":[161],"validation.":[162],"After":[163],"performing":[164],"prospective":[165],"SBVS,":[166],"compounds":[167],"from":[168],"under-represented":[170],"portions":[171],"inhibitor":[175],"chemical":[176],"selected":[179],"vitro":[182],"evaluation.":[183,244],"Two":[184],"compounds,":[185],"NDJ18":[186,223,236],"NDJ85,":[188],"as":[191],"potent":[192,221],"selective":[194],"inhibitors,":[196],"which":[197],"validated":[198],"silico":[201],"opened":[204],"up":[205],"possibility":[207],"generalization":[209],"broadening":[211],"application.":[214],"The":[215],"anticancer":[216],"effects":[217],"most":[220],"compound":[222],"examined":[225],"on":[226],"triple-negative":[228],"breast":[229],"cancer":[230],"cell":[231],"line.":[232],"Results":[233],"indicated":[234],"that":[235],"represents":[237],"promising":[239],"structure":[240],"suitable":[241],"further":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
