{"id":"https://openalex.org/W4200506814","doi":"https://doi.org/10.1021/acs.jcim.1c01240","title":"Supramolecular Organization of SARS-CoV and SARS-CoV-2 Virions Revealed by Coarse-Grained Models of Intact Virus Envelopes","display_name":"Supramolecular Organization of SARS-CoV and SARS-CoV-2 Virions Revealed by Coarse-Grained Models of Intact Virus Envelopes","publication_year":2021,"publication_date":"2021-12-16","ids":{"openalex":"https://openalex.org/W4200506814","doi":"https://doi.org/10.1021/acs.jcim.1c01240","pmid":"https://pubmed.ncbi.nlm.nih.gov/34911299"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c01240","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c01240","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100335573","display_name":"Beibei Wang","orcid":"https://orcid.org/0000-0003-2193-3777"},"institutions":[{"id":"https://openalex.org/I25254941","display_name":"Beijing Normal University","ror":"https://ror.org/022k4wk35","country_code":"CN","type":"education","lineage":["https://openalex.org/I25254941"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Beibei Wang","raw_affiliation_strings":["Centre for Advanced Materials Research, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, No. 18 Jinfeng Road, Zhuhai 519087, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Centre for Advanced Materials Research, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, No. 18 Jinfeng Road, Zhuhai 519087, Guangdong, China","institution_ids":["https://openalex.org/I25254941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027047577","display_name":"Changqing Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changqing Zhong","raw_affiliation_strings":["Centre for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, 2006 Xiyuan Avenue, Chengdu 611731, Sichuan, China"],"affiliations":[{"raw_affiliation_string":"Centre for Informational Biology, School of Life Science and Technology, University of Electronic Science and Technology of China, 2006 Xiyuan Avenue, Chengdu 611731, Sichuan, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017696854","display_name":"D. Peter Tieleman","orcid":"https://orcid.org/0000-0001-5507-0688"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. Peter Tieleman","raw_affiliation_strings":["Department of Biological Sciences and Centre for Molecular Simulation, University of Calgary, 2500 University Drive North West, Calgary T2N 1N4, Alberta, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences and Centre for Molecular Simulation, University of Calgary, 2500 University Drive North West, Calgary T2N 1N4, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100335573"],"corresponding_institution_ids":["https://openalex.org/I25254941"],"apc_list":null,"apc_paid":null,"fwci":5.2268,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.95870758,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"62","issue":"1","first_page":"176","last_page":"186"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.68528813123703},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.6483065485954285},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.511480450630188},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.49315065145492554},{"id":"https://openalex.org/keywords/lipid-bilayer-fusion","display_name":"Lipid bilayer fusion","score":0.48836061358451843},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4726264178752899},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.46863746643066406},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4581768214702606},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.4503900706768036},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus","display_name":"Severe acute respiratory syndrome coronavirus","score":0.44074851274490356},{"id":"https://openalex.org/keywords/sars-virus","display_name":"Sars virus","score":0.4346398711204529},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.409803569316864},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32468879222869873},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18610838055610657},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.15680882334709167},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.1041724681854248}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.68528813123703},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.6483065485954285},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.511480450630188},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.49315065145492554},{"id":"https://openalex.org/C103038307","wikidata":"https://www.wikidata.org/wiki/Q6556360","display_name":"Lipid bilayer fusion","level":3,"score":0.48836061358451843},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4726264178752899},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.46863746643066406},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4581768214702606},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.4503900706768036},{"id":"https://openalex.org/C2910188402","wikidata":"https://www.wikidata.org/wiki/Q85438966","display_name":"Severe acute respiratory syndrome coronavirus","level":5,"score":0.44074851274490356},{"id":"https://openalex.org/C3020799909","wikidata":"https://www.wikidata.org/wiki/Q85438966","display_name":"Sars virus","level":5,"score":0.4346398711204529},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.409803569316864},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32468879222869873},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18610838055610657},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.15680882334709167},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.1041724681854248},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086942","descriptor_name":"Viral Envelope","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086942","descriptor_name":"Viral Envelope","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086942","descriptor_name":"Viral Envelope","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045473","descriptor_name":"Severe acute respiratory syndrome-related coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D045473","descriptor_name":"Severe acute respiratory syndrome-related coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D045473","descriptor_name":"Severe acute respiratory syndrome-related coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.1c01240","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c01240","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34911299","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34911299","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8600000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1684419265","display_name":null,"funder_award_id":"A03018023601045","funder_id":"https://openalex.org/F4320329878","funder_display_name":"Central University Basic Research Fund of China"},{"id":"https://openalex.org/G1986349220","display_name":null,"funder_award_id":"31971176","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6117491317","display_name":null,"funder_award_id":"31800616","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329878","display_name":"Central University Basic Research Fund of China","ror":null},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1544561280","https://openalex.org/W1806547840","https://openalex.org/W1807366173","https://openalex.org/W1969740333","https://openalex.org/W1981817247","https://openalex.org/W1992920740","https://openalex.org/W1999890765","https://openalex.org/W2012289331","https://openalex.org/W2029667189","https://openalex.org/W2035266068","https://openalex.org/W2045340223","https://openalex.org/W2051864856","https://openalex.org/W2057477511","https://openalex.org/W2066725690","https://openalex.org/W2067669402","https://openalex.org/W2105149323","https://openalex.org/W2109027260","https://openalex.org/W2119267663","https://openalex.org/W2142532813","https://openalex.org/W2146850348","https://openalex.org/W2163595857","https://openalex.org/W2169376557","https://openalex.org/W2171268876","https://openalex.org/W2182236066","https://openalex.org/W2460255279","https://openalex.org/W2532302047","https://openalex.org/W2584847871","https://openalex.org/W2606148195","https://openalex.org/W2790185928","https://openalex.org/W2910356247","https://openalex.org/W2912735727","https://openalex.org/W2927778654","https://openalex.org/W2942754201","https://openalex.org/W2943222525","https://openalex.org/W2947808797","https://openalex.org/W3004280078","https://openalex.org/W3009335299","https://openalex.org/W3009912996","https://openalex.org/W3010441732","https://openalex.org/W3012655066","https://openalex.org/W3030688226","https://openalex.org/W3033962914","https://openalex.org/W3036193472","https://openalex.org/W3040960887","https://openalex.org/W3042332408","https://openalex.org/W3045339903","https://openalex.org/W3049142173","https://openalex.org/W3058836816","https://openalex.org/W3080460119","https://openalex.org/W3083130172","https://openalex.org/W3087347658","https://openalex.org/W3088579397","https://openalex.org/W3092550649","https://openalex.org/W3093819516","https://openalex.org/W3093831845","https://openalex.org/W3093842248","https://openalex.org/W3103021984","https://openalex.org/W3105514776","https://openalex.org/W3106674684","https://openalex.org/W3107432308","https://openalex.org/W3133749268","https://openalex.org/W3148042916","https://openalex.org/W3150505176","https://openalex.org/W3178485498","https://openalex.org/W3195039506"],"related_works":["https://openalex.org/W2484203845","https://openalex.org/W3047950519","https://openalex.org/W3031081505","https://openalex.org/W3118830841","https://openalex.org/W4256095626","https://openalex.org/W3092302669","https://openalex.org/W3088744453","https://openalex.org/W2768110043","https://openalex.org/W2492186718","https://openalex.org/W3048965087"],"abstract_inverted_index":{"The":[0,22],"coronavirus":[1,28],"disease":[2],"19":[3],"(COVID-19)":[4],"pandemic":[5],"is":[6],"causing":[7],"a":[8,16,32,93],"global":[9],"health":[10],"crisis":[11],"and":[12,19,35,57,69,84,89,106,119,130,141,149,160,163],"has":[13,31],"already":[14],"caused":[15],"devastating":[17],"societal":[18],"economic":[20],"burden.":[21],"pathogen,":[23],"severe":[24],"acute":[25],"respiratory":[26],"syndrome":[27],"2":[29],"(SARS-CoV-2),":[30],"high":[33],"sequence":[34],"architecture":[36],"identity":[37],"with":[38,96],"SARS-CoV,":[39],"but":[40],"far":[41],"more":[42],"people":[43],"have":[44],"been":[45],"infected":[46],"by":[47],"SARS-CoV-2.":[48],"Here,":[49],"combining":[50],"the":[51,104,109,117,123,127,131,134,145],"structural":[52,97,140],"data":[53],"from":[54],"cryo-electron":[55],"microscopy":[56],"structure":[58],"prediction,":[59],"we":[60],"constructed":[61],"bottom-up":[62],"Martini":[63],"coarse-grained":[64],"models":[65,138],"of":[66,111,133],"intact":[67],"SARS-CoV":[68,88,118],"SARS-CoV-2":[70,90,120],"envelopes.":[71],"Microsecond":[72],"molecular":[73],"dynamics":[74,83],"simulations":[75],"were":[76],"performed,":[77],"allowing":[78],"us":[79],"to":[80],"explore":[81],"their":[82],"supramolecular":[85],"organization.":[86],"Both":[87],"envelopes":[91,121,148],"present":[92],"spherical":[94],"morphology,":[95],"proteins":[98,129],"forming":[99],"multiple":[100],"string-like":[101],"islands":[102],"in":[103],"membrane":[105,161],"clusters":[107],"between":[108,116,126],"heads":[110],"spike":[112,128,135],"proteins.":[113,136],"Critical":[114],"differences":[115],"are":[122],"interaction":[124],"pattern":[125],"flexibility":[132],"Our":[137],"provide":[139],"dynamic":[142],"insights":[143],"into":[144],"SARS":[146],"virus":[147],"could":[150],"be":[151],"used":[152],"for":[153],"further":[154],"investigation,":[155],"such":[156],"as":[157],"drug":[158],"design":[159],"fusion":[162],"fission":[164],"processes.":[165]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":9}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
