{"id":"https://openalex.org/W4224234939","doi":"https://doi.org/10.1021/acs.jcim.1c01202","title":"Algorithm for the Pruning of Synthesis Graphs","display_name":"Algorithm for the Pruning of Synthesis Graphs","publication_year":2022,"publication_date":"2022-04-19","ids":{"openalex":"https://openalex.org/W4224234939","doi":"https://doi.org/10.1021/acs.jcim.1c01202","pmid":"https://pubmed.ncbi.nlm.nih.gov/35438992"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c01202","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c01202","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.1c01202","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026017430","display_name":"Gergely Zahor\u00e1nszky-K\u00f6halmi","orcid":"https://orcid.org/0000-0002-2534-8770"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gergely Zahor\u00e1nszky-K\u0151halmi","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056552359","display_name":"Nikita Lysov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikita Lysov","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070804410","display_name":"Ilia Vorontcov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilia Vorontcov","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100641853","display_name":"Jeffrey Wang","orcid":"https://orcid.org/0000-0002-6918-2821"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Wang","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071099343","display_name":"Jeyaraman Soundararajan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeyaraman Soundararajan","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052381143","display_name":"Dimitrios Metaxotos","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dimitrios Metaxotos","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102240468","display_name":"Biju Mathew","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Biju Mathew","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088700026","display_name":"Rafat Sarosh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rafat Sarosh","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059243759","display_name":"Sam Michael","orcid":"https://orcid.org/0000-0002-1070-6563"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel G. Michael","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036949252","display_name":"Alexander G. Godfrey","orcid":"https://orcid.org/0000-0003-3386-537X"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander G. Godfrey","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Rockville, Maryland 20850, United States","institution_ids":["https://openalex.org/I4210148682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5026017430"],"corresponding_institution_ids":["https://openalex.org/I4210148682"],"apc_list":null,"apc_paid":null,"fwci":0.6035,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.69408086,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"62","issue":"9","first_page":"2226","last_page":"2238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9624000191688538,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9526000022888184,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7322170734405518},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.555273175239563},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5444326400756836},{"id":"https://openalex.org/keywords/pruning","display_name":"Pruning","score":0.534282922744751},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5284469127655029},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4281449019908905},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.409220814704895}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7322170734405518},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.555273175239563},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5444326400756836},{"id":"https://openalex.org/C108010975","wikidata":"https://www.wikidata.org/wiki/Q500094","display_name":"Pruning","level":2,"score":0.534282922744751},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5284469127655029},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4281449019908905},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.409220814704895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.1c01202","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c01202","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:35438992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35438992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9093600","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9093600","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.1c01202","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c01202","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1973166400","https://openalex.org/W1981276685","https://openalex.org/W1994200682","https://openalex.org/W2066412916","https://openalex.org/W2132022337","https://openalex.org/W2159675211","https://openalex.org/W2324964582","https://openalex.org/W2342249984","https://openalex.org/W2418371935","https://openalex.org/W2580919858","https://openalex.org/W2747592475","https://openalex.org/W2783658781","https://openalex.org/W2796491734","https://openalex.org/W2799620402","https://openalex.org/W2902762889","https://openalex.org/W2903262661","https://openalex.org/W2947423323","https://openalex.org/W2968071222","https://openalex.org/W2994678679","https://openalex.org/W3005137967","https://openalex.org/W3008479740","https://openalex.org/W3010145447","https://openalex.org/W3015464008","https://openalex.org/W3082712976","https://openalex.org/W3103092523","https://openalex.org/W3105920383","https://openalex.org/W3109834551","https://openalex.org/W3163850647","https://openalex.org/W4220819463","https://openalex.org/W6977367121"],"related_works":["https://openalex.org/W2371352078","https://openalex.org/W2953461625","https://openalex.org/W2077383796","https://openalex.org/W2080136900","https://openalex.org/W2999799752","https://openalex.org/W2372768926","https://openalex.org/W2115167491","https://openalex.org/W125753862","https://openalex.org/W3088754131","https://openalex.org/W3038848193"],"abstract_inverted_index":{"Synthesis":[0,105,143],"route":[1],"planning":[2],"is":[3,57,158,172],"in":[4,123,192,216],"the":[5,13,30,52,79,95,99,118,124,142,155,180,205,213,225,228,234],"core":[6],"of":[7,32,101,120,126,129,165,227,242],"chemical":[8],"intelligence":[9],"that":[10,78,86,148,223,233],"will":[11,237],"power":[12],"autonomous":[14],"chemistry":[15],"platforms.":[16],"In":[17,137,208],"this":[18,138,150,209],"task,":[19],"we":[20,91,140,211],"rely":[21],"on":[22],"algorithms":[23],"to":[24,51,60,66,93,154,194,201],"generate":[25],"possible":[26],"synthesis":[27,38,45,63,96,160,206,245],"routes":[28,39],"with":[29,186],"help":[31],"retro-":[33],"and":[34,117,162,198,218],"forward-synthetic":[35],"approaches.":[36],"Generated":[37],"can":[40,107],"be":[41,88,108,202,238],"merged":[42],"into":[43],"a":[44,62,127,159,163,187],"graph":[46,64,97,161],"which":[47,196],"represents":[48],"theoretical":[49],"pathways":[50],"target":[53],"molecule.":[54],"However,":[55],"it":[56],"often":[58],"required":[59],"modify":[61],"due":[65],"typical":[67],"constraints.":[68],"These":[69],"constraints":[70],"might":[71,87],"include":[72],"\"undesirable":[73],"substances\",":[74],"e.g.,":[75],"an":[76,134,239],"intermediate":[77],"chemist":[80],"does":[81],"not":[82],"favor":[83],"or":[84],"substances":[85,131,171],"toxic.":[89],"Consequently,":[90],"need":[92,200],"prune":[94],"by":[98],"elimination":[100],"such":[102,121],"undesirable":[103,130,166],"substances.":[104,167],"graphs":[106,122],"represented":[109],"as":[110,174],"directed":[111],"(not":[112],"necessarily":[113],"acyclic)":[114],"bipartite":[115],"graphs,":[116],"pruning":[119],"light":[125],"set":[128,164],"has":[132],"been":[133],"open":[135],"question.":[136,151],"study,":[139,210],"present":[141,212],"Graph":[144],"Pruning":[145],"(SGP)":[146],"algorithm":[147,157,184,215,236],"addresses":[149],"The":[152,182],"input":[153],"SGP":[156,183,214,229,235],"Furthermore,":[168],"information":[169],"for":[170],"provided":[173],"metadata":[175],"regarding":[176],"their":[177],"availability":[178],"from":[179,204],"inventory.":[181],"operates":[185],"simple":[188],"local":[189],"rule":[190],"set,":[191],"order":[193],"determine":[195],"nodes":[197],"edges":[199],"eliminated":[203],"graph.":[207],"detail":[217],"provide":[219],"several":[220],"case":[221],"studies":[222],"demonstrate":[224],"operation":[226],"algorithm.":[230],"We":[231],"believe":[232],"essential":[240],"component":[241],"computer":[243],"aided":[244],"planning.":[246]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
