{"id":"https://openalex.org/W3203800312","doi":"https://doi.org/10.1021/acs.jcim.1c00998","title":"Making it Rain: Cloud-Based Molecular Simulations for Everyone","display_name":"Making it Rain: Cloud-Based Molecular Simulations for Everyone","publication_year":2021,"publication_date":"2021-10-01","ids":{"openalex":"https://openalex.org/W3203800312","doi":"https://doi.org/10.1021/acs.jcim.1c00998","mag":"3203800312","pmid":"https://pubmed.ncbi.nlm.nih.gov/34595915"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00998","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00998","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051123981","display_name":"Pablo R. Arantes","orcid":"https://orcid.org/0000-0003-1946-2750"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pablo R. Arantes","raw_affiliation_strings":["Department of Bioengineering, University of California, Riverside, California 92521, United States"],"raw_orcid":"https://orcid.org/0000-0003-1946-2750","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, Riverside, California 92521, United States","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017891381","display_name":"Marcelo D. Pol\u00eato","orcid":"https://orcid.org/0000-0001-9210-690X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcelo D. Pol\u00eato","raw_affiliation_strings":["Department of Biochemistry, Virginia Tech, Blacksburg, Virginia 24061, United States"],"raw_orcid":"https://orcid.org/0000-0001-9210-690X","affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Virginia Tech, Blacksburg, Virginia 24061, United States","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067913606","display_name":"Conrado Pedebos","orcid":"https://orcid.org/0000-0003-0378-4851"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Conrado Pedebos","raw_affiliation_strings":["School of Chemistry, University of Southampton, Highfield Campus, Southampton SO17 1BJ, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, University of Southampton, Highfield Campus, Southampton SO17 1BJ, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066200129","display_name":"Rodrigo Ligabue\u2010Braun","orcid":"https://orcid.org/0000-0002-2555-9754"},"institutions":[{"id":"https://openalex.org/I134363262","display_name":"Universidade Federal de Ci\u00eancias da Sa\u00fade de Porto Alegre","ror":"https://ror.org/00x0nkm13","country_code":"BR","type":"education","lineage":["https://openalex.org/I134363262"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rodrigo Ligabue-Braun","raw_affiliation_strings":["Department of Pharmacosciences, Federal University of Health Sciences of Proto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-2555-9754","affiliations":[{"raw_affiliation_string":"Department of Pharmacosciences, Federal University of Health Sciences of Proto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil","institution_ids":["https://openalex.org/I134363262"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051123981"],"corresponding_institution_ids":["https://openalex.org/I103635307"],"apc_list":null,"apc_paid":null,"fwci":34.8994,"has_fulltext":false,"cited_by_count":133,"citation_normalized_percentile":{"value":0.9954745,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"61","issue":"10","first_page":"4852","last_page":"4856"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9466999769210815,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8053190112113953},{"id":"https://openalex.org/keywords/microsecond","display_name":"Microsecond","score":0.7001643776893616},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6867104768753052},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5649896264076233},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.5022799968719482},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.47684943675994873},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.41813531517982483},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.414132297039032},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3403472900390625},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1064862608909607},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0878179669380188}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8053190112113953},{"id":"https://openalex.org/C34742353","wikidata":"https://www.wikidata.org/wiki/Q842015","display_name":"Microsecond","level":2,"score":0.7001643776893616},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6867104768753052},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5649896264076233},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.5022799968719482},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.47684943675994873},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.41813531517982483},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.414132297039032},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3403472900390625},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1064862608909607},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0878179669380188},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.1c00998","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00998","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34595915","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34595915","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/1","display_name":"No poverty"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2006070850","https://openalex.org/W2021520922","https://openalex.org/W2090663546","https://openalex.org/W2170711116","https://openalex.org/W2332712348","https://openalex.org/W2397547384","https://openalex.org/W2718878673","https://openalex.org/W2768702618","https://openalex.org/W2796489537","https://openalex.org/W2892113269","https://openalex.org/W2947359287","https://openalex.org/W2949223833","https://openalex.org/W3005146385","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3118861764","https://openalex.org/W3141491403","https://openalex.org/W3158681841","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3185446084","https://openalex.org/W3186179742","https://openalex.org/W4213255340","https://openalex.org/W4229658977"],"related_works":["https://openalex.org/W2468739399","https://openalex.org/W2026253269","https://openalex.org/W1576112914","https://openalex.org/W2326607960","https://openalex.org/W2060791431","https://openalex.org/W1989854992","https://openalex.org/W2313069754","https://openalex.org/W1981267123","https://openalex.org/W2088817880","https://openalex.org/W2017394797"],"abstract_inverted_index":{"We":[0,60],"present":[1],"a":[2,29,36],"user-friendly":[3],"front-end":[4],"for":[5,32,35],"running":[6],"molecular":[7,69],"dynamics":[8],"(MD)":[9],"simulations":[10,42,54],"using":[11],"the":[12,16,26,56,72],"OpenMM":[13],"toolkit":[14],"on":[15],"Google":[17],"Colab":[18],"framework.":[19],"Our":[20],"goals":[21],"are":[22],"(1)":[23],"to":[24,45],"highlight":[25],"usage":[27],"of":[28,68],"cloud-computing":[30],"scheme":[31],"educational":[33],"purposes":[34],"hands-on":[37],"approach":[38],"when":[39],"learning":[40,67],"MD":[41,53],"and":[43,66],"(2)":[44],"exemplify":[46],"how":[47],"low-income":[48],"research":[49],"groups":[50],"can":[51],"perform":[52],"in":[55],"microsecond":[57],"time":[58],"scale.":[59],"hope":[61],"this":[62],"work":[63],"facilitates":[64],"teaching":[65],"simulation":[70],"throughout":[71],"community.":[73]},"counts_by_year":[{"year":2026,"cited_by_count":31},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2025-10-10T00:00:00"}
