{"id":"https://openalex.org/W4200306039","doi":"https://doi.org/10.1021/acs.jcim.1c00889","title":"Active Site Sequence Representations of Human Kinases Outperform Full Sequence Representations for Affinity Prediction and Inhibitor Generation: 3D Effects in a 1D Model","display_name":"Active Site Sequence Representations of Human Kinases Outperform Full Sequence Representations for Affinity Prediction and Inhibitor Generation: 3D Effects in a 1D Model","publication_year":2021,"publication_date":"2021-12-14","ids":{"openalex":"https://openalex.org/W4200306039","doi":"https://doi.org/10.1021/acs.jcim.1c00889","pmid":"https://pubmed.ncbi.nlm.nih.gov/34905358"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00889","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00889","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.3929/ethz-b-000522387","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002562002","display_name":"Jannis Born","orcid":"https://orcid.org/0000-0001-8307-5670"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Jannis Born","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland","IBM Research Europe, 8804 R\u00fcschlikon, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-8307-5670","affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"IBM Research Europe, 8804 R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111979997","display_name":"Tien Huynh","orcid":"https://orcid.org/0000-0002-6455-3056"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tien Huynh","raw_affiliation_strings":["IBM Research, Yorktown Heights, New York 10598, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Yorktown Heights, New York 10598, United States","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044514479","display_name":"Astrid Stroobants","orcid":"https://orcid.org/0000-0002-8567-8480"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Astrid Stroobants","raw_affiliation_strings":["Department of Chemistry, Imperial College London, SW7 2AZ London, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-8567-8480","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Imperial College London, SW7 2AZ London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071633654","display_name":"Wendy D. Cornell","orcid":"https://orcid.org/0000-0002-7339-0201"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wendy D. Cornell","raw_affiliation_strings":["IBM Research, Yorktown Heights, New York 10598, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Yorktown Heights, New York 10598, United States","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005561269","display_name":"Matteo Manica","orcid":"https://orcid.org/0000-0002-8872-0269"},"institutions":[{"id":"https://openalex.org/I4210126328","display_name":"IBM Research - Zurich","ror":"https://ror.org/02js37d36","country_code":"CH","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210126328"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Matteo Manica","raw_affiliation_strings":["IBM Research Europe, 8804 R\u00fcschlikon, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-8872-0269","affiliations":[{"raw_affiliation_string":"IBM Research Europe, 8804 R\u00fcschlikon, Switzerland","institution_ids":["https://openalex.org/I4210126328"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002562002","https://openalex.org/A5005561269"],"corresponding_institution_ids":["https://openalex.org/I35440088","https://openalex.org/I4210126328"],"apc_list":null,"apc_paid":null,"fwci":3.5604,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.93554671,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"62","issue":"2","first_page":"240","last_page":"257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7590616941452026},{"id":"https://openalex.org/keywords/kinome","display_name":"Kinome","score":0.7033369541168213},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6026065945625305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5305870771408081},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5144987106323242},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4931046664714813},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.4740737974643707},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.455496609210968},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.4486451745033264},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44286686182022095},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.43527668714523315},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41466596722602844},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.292685329914093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2814146876335144},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20989182591438293},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13394951820373535}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7590616941452026},{"id":"https://openalex.org/C54174078","wikidata":"https://www.wikidata.org/wiki/Q3197188","display_name":"Kinome","level":3,"score":0.7033369541168213},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6026065945625305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5305870771408081},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5144987106323242},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4931046664714813},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.4740737974643707},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.455496609210968},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.4486451745033264},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44286686182022095},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.43527668714523315},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41466596722602844},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.292685329914093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2814146876335144},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20989182591438293},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13394951820373535},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.1c00889","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00889","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34905358","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34905358","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/522387","is_oa":false,"landing_page_url":"http://hdl.handle.net/20.500.11850/522387","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling, 62 (2)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000522387","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000522387","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.3929/ethz-b-000522387","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000522387","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":85,"referenced_works":["https://openalex.org/W1510052597","https://openalex.org/W1837139339","https://openalex.org/W1891334654","https://openalex.org/W1918079945","https://openalex.org/W1966285532","https://openalex.org/W1971590501","https://openalex.org/W1971606559","https://openalex.org/W1975147762","https://openalex.org/W1975875968","https://openalex.org/W1988037271","https://openalex.org/W1993438476","https://openalex.org/W2005361085","https://openalex.org/W2017254121","https://openalex.org/W2030205108","https://openalex.org/W2031441006","https://openalex.org/W2042553090","https://openalex.org/W2062289724","https://openalex.org/W2138778824","https://openalex.org/W2143210482","https://openalex.org/W2204695023","https://openalex.org/W2233361891","https://openalex.org/W2471196942","https://openalex.org/W2529996553","https://openalex.org/W2531921652","https://openalex.org/W2540540415","https://openalex.org/W2583907533","https://openalex.org/W2714724074","https://openalex.org/W2734982589","https://openalex.org/W2784213390","https://openalex.org/W2785947426","https://openalex.org/W2790808809","https://openalex.org/W2806117056","https://openalex.org/W2806290811","https://openalex.org/W2806437034","https://openalex.org/W2806547269","https://openalex.org/W2807792492","https://openalex.org/W2809216727","https://openalex.org/W2860192827","https://openalex.org/W2869298098","https://openalex.org/W2892653600","https://openalex.org/W2912212024","https://openalex.org/W2915792373","https://openalex.org/W2918239264","https://openalex.org/W2918335507","https://openalex.org/W2939590817","https://openalex.org/W2942173509","https://openalex.org/W2945551948","https://openalex.org/W2956961449","https://openalex.org/W2964206522","https://openalex.org/W2969996838","https://openalex.org/W2971690404","https://openalex.org/W2978484973","https://openalex.org/W2985931096","https://openalex.org/W2990099866","https://openalex.org/W2997958114","https://openalex.org/W3000369508","https://openalex.org/W3009321976","https://openalex.org/W3019745511","https://openalex.org/W3021453944","https://openalex.org/W3024375027","https://openalex.org/W3028589594","https://openalex.org/W3029836473","https://openalex.org/W3030285818","https://openalex.org/W3037888463","https://openalex.org/W3043461363","https://openalex.org/W3045928028","https://openalex.org/W3087418839","https://openalex.org/W3103171309","https://openalex.org/W3109506202","https://openalex.org/W3130227682","https://openalex.org/W3133523400","https://openalex.org/W3135935512","https://openalex.org/W3158688028","https://openalex.org/W3160420762","https://openalex.org/W3161074857","https://openalex.org/W3162155458","https://openalex.org/W3163209783","https://openalex.org/W3164680581","https://openalex.org/W3186744718","https://openalex.org/W3189729408","https://openalex.org/W3203810337","https://openalex.org/W3208100964","https://openalex.org/W4212883601","https://openalex.org/W4230428500","https://openalex.org/W4295216797"],"related_works":["https://openalex.org/W4327951657","https://openalex.org/W2087992115","https://openalex.org/W2044043190","https://openalex.org/W3125335171","https://openalex.org/W2925167008","https://openalex.org/W1989116199","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2594726310","https://openalex.org/W2355193834"],"abstract_inverted_index":{"for":[0,13,132],"both":[1,106,114],"unseen":[2],"ligands":[3],"and":[4,92,116],"kinases.":[5,135],"Our":[6,120],"interpretability":[7],"analysis":[8],"reveals":[9],"a":[10,86],"potential":[11],"explanation":[12],"the":[14,17,27,37,41,55,60,63,95,101,123,126],"superiority":[15],"of":[16,29,62],"active":[18,42,64,96],"site":[19,43,97],"models:":[20],"whereas":[21],"only":[22],"mild":[23],"statistical":[24],"effects":[25],"about":[26,54],"extraction":[28],"three-dimensional":[30],"(3D)":[31],"interaction":[32],"sites":[33],"take":[34],"place":[35],"in":[36,67,80,100],"full":[38,127],"sequence":[39],"models,":[40],"models":[44,71],"are":[45],"equipped":[46],"with":[47],"an":[48],"implicit":[49],"but":[50,104],"strong":[51],"inductive":[52],"bias":[53],"3D":[56],"structure":[57,129],"stemming":[58],"from":[59],"discontiguity":[61],"sites.":[65],"Moreover,":[66],"direct":[68],"comparisons,":[69],"our":[70],"perform":[72],"similarly":[73],"or":[74],"better":[75],"than":[76],"previous":[77],"state-of-the-art":[78],"approaches":[79],"affinity":[81],"prediction.":[82],"We":[83],"then":[84],"investigate":[85],"de":[87],"novo":[88],"molecular":[89,118],"design":[90],"task":[91],"find":[93],"that":[94,125],"provides":[98],"benefits":[99],"computational":[102],"efficiency,":[103],"otherwise,":[105],"kinase":[107],"representations":[108],"yield":[109],"similar":[110],"optimized":[111],"affinities":[112],"(for":[113],"SMILES-":[115],"SELFIES-based":[117],"generators).":[119],"work":[121],"challenges":[122],"assumption":[124],"primary":[128],"is":[130],"indispensable":[131],"modeling":[133],"human":[134]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
