{"id":"https://openalex.org/W3198913336","doi":"https://doi.org/10.1021/acs.jcim.1c00694","title":"Special Features of COVID-19 in the FMODB: Fragment Molecular Orbital Calculations and Interaction Energy Analysis of SARS-CoV-2-Related Proteins","display_name":"Special Features of COVID-19 in the FMODB: Fragment Molecular Orbital Calculations and Interaction Energy Analysis of SARS-CoV-2-Related Proteins","publication_year":2021,"publication_date":"2021-09-10","ids":{"openalex":"https://openalex.org/W3198913336","doi":"https://doi.org/10.1021/acs.jcim.1c00694","mag":"3198913336","pmid":"https://pubmed.ncbi.nlm.nih.gov/34506132"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00694","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00694","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079773397","display_name":"Kaori Fukuzawa","orcid":null},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I36296616","display_name":"Hoshi University","ror":"https://ror.org/01mrvbd33","country_code":"JP","type":"education","lineage":["https://openalex.org/I36296616"]},{"id":"https://openalex.org/I74894318","display_name":"Ebara (Japan)","ror":"https://ror.org/02yemx219","country_code":"JP","type":"company","lineage":["https://openalex.org/I74894318"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kaori Fukuzawa","raw_affiliation_strings":["Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, 6-6-11 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan","Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5357-8250","affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, 6-6-11 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan","institution_ids":["https://openalex.org/I201537933"]},{"raw_affiliation_string":"Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan","institution_ids":["https://openalex.org/I36296616","https://openalex.org/I74894318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071683141","display_name":"Koichiro Kato","orcid":"https://orcid.org/0000-0003-4392-8741"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Koichiro Kato","raw_affiliation_strings":["Center for Molecular Systems (CMS), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan","Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan"],"raw_orcid":"https://orcid.org/0000-0003-4392-8741","affiliations":[{"raw_affiliation_string":"Center for Molecular Systems (CMS), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Department of Applied Chemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076104735","display_name":"Chiduru Watanabe","orcid":"https://orcid.org/0000-0002-0742-3896"},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Chiduru Watanabe","raw_affiliation_strings":["JST PRESTO, 4-1-8, Honcho, Kawaguchi, Saitama 332-0012, Japan","RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0002-0742-3896","affiliations":[{"raw_affiliation_string":"JST PRESTO, 4-1-8, Honcho, Kawaguchi, Saitama 332-0012, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210116810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103219688","display_name":"Yusuke Kawashima","orcid":"https://orcid.org/0000-0001-8465-6848"},"institutions":[{"id":"https://openalex.org/I36296616","display_name":"Hoshi University","ror":"https://ror.org/01mrvbd33","country_code":"JP","type":"education","lineage":["https://openalex.org/I36296616"]},{"id":"https://openalex.org/I74894318","display_name":"Ebara (Japan)","ror":"https://ror.org/02yemx219","country_code":"JP","type":"company","lineage":["https://openalex.org/I74894318"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yusuke Kawashima","raw_affiliation_strings":["Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan"],"raw_orcid":"https://orcid.org/0000-0001-8465-6848","affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan","institution_ids":["https://openalex.org/I36296616","https://openalex.org/I74894318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064739119","display_name":"Yuma Handa","orcid":"https://orcid.org/0000-0001-8660-8487"},"institutions":[{"id":"https://openalex.org/I36296616","display_name":"Hoshi University","ror":"https://ror.org/01mrvbd33","country_code":"JP","type":"education","lineage":["https://openalex.org/I36296616"]},{"id":"https://openalex.org/I74894318","display_name":"Ebara (Japan)","ror":"https://ror.org/02yemx219","country_code":"JP","type":"company","lineage":["https://openalex.org/I74894318"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuma Handa","raw_affiliation_strings":["Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan"],"raw_orcid":"https://orcid.org/0000-0001-8660-8487","affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan","institution_ids":["https://openalex.org/I36296616","https://openalex.org/I74894318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081466165","display_name":"Ami Yamamoto","orcid":"https://orcid.org/0000-0001-6403-2050"},"institutions":[{"id":"https://openalex.org/I36296616","display_name":"Hoshi University","ror":"https://ror.org/01mrvbd33","country_code":"JP","type":"education","lineage":["https://openalex.org/I36296616"]},{"id":"https://openalex.org/I74894318","display_name":"Ebara (Japan)","ror":"https://ror.org/02yemx219","country_code":"JP","type":"company","lineage":["https://openalex.org/I74894318"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ami Yamamoto","raw_affiliation_strings":["Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan","institution_ids":["https://openalex.org/I36296616","https://openalex.org/I74894318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100770796","display_name":"Kazuki Watanabe","orcid":"https://orcid.org/0000-0002-8119-4446"},"institutions":[{"id":"https://openalex.org/I159385669","display_name":"Chiba University","ror":"https://ror.org/01hjzeq58","country_code":"JP","type":"education","lineage":["https://openalex.org/I159385669"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuki Watanabe","raw_affiliation_strings":["Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8675, Japan","Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka 565-0871, Japan"],"raw_orcid":"https://orcid.org/0000-0002-8119-4446","affiliations":[{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8675, Japan","institution_ids":["https://openalex.org/I159385669"]},{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034122467","display_name":"Tatsuya Ohyama","orcid":"https://orcid.org/0000-0002-8375-2608"},"institutions":[{"id":"https://openalex.org/I15991598","display_name":"Konan University","ror":"https://ror.org/059b5pb30","country_code":"JP","type":"education","lineage":["https://openalex.org/I15991598"]},{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Ohyama","raw_affiliation_strings":["Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20, Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan","RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0002-8375-2608","affiliations":[{"raw_affiliation_string":"Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20, Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan","institution_ids":["https://openalex.org/I15991598"]},{"raw_affiliation_string":"RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210116810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063038781","display_name":"Kikuko Kamisaka","orcid":"https://orcid.org/0000-0002-1215-2525"},"institutions":[{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kikuko Kamisaka","raw_affiliation_strings":["RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0002-1215-2525","affiliations":[{"raw_affiliation_string":"RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210116810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063060714","display_name":"Daisuke Takaya","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daisuke Takaya","raw_affiliation_strings":["RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0001-6020-8151","affiliations":[{"raw_affiliation_string":"RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210116810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054336320","display_name":"Teruki Honma","orcid":"https://orcid.org/0000-0003-3761-9504"},"institutions":[{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Teruki Honma","raw_affiliation_strings":["RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3761-9504","affiliations":[{"raw_affiliation_string":"RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210116810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5054336320","https://openalex.org/A5071683141","https://openalex.org/A5076104735","https://openalex.org/A5079773397"],"corresponding_institution_ids":["https://openalex.org/I135598925","https://openalex.org/I201537933","https://openalex.org/I36296616","https://openalex.org/I4210086780","https://openalex.org/I4210116810","https://openalex.org/I74894318"],"apc_list":null,"apc_paid":null,"fwci":2.8768,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.91843626,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"61","issue":"9","first_page":"4594","last_page":"4612"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.7001871466636658},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6958222985267639},{"id":"https://openalex.org/keywords/fragment-molecular-orbital","display_name":"Fragment molecular orbital","score":0.6688176989555359},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5795956254005432},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.5439947843551636},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5075711011886597},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.44531774520874023},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4423520565032959},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.36624613404273987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34076839685440063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33205273747444153},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3290444612503052},{"id":"https://openalex.org/keywords/molecular-orbital","display_name":"Molecular orbital","score":0.23901042342185974},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2187231481075287},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16700613498687744},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14202579855918884},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1263849139213562}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.7001871466636658},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6958222985267639},{"id":"https://openalex.org/C105302883","wikidata":"https://www.wikidata.org/wiki/Q5477685","display_name":"Fragment molecular orbital","level":4,"score":0.6688176989555359},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5795956254005432},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.5439947843551636},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5075711011886597},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.44531774520874023},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4423520565032959},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.36624613404273987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34076839685440063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33205273747444153},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3290444612503052},{"id":"https://openalex.org/C139358910","wikidata":"https://www.wikidata.org/wiki/Q725417","display_name":"Molecular orbital","level":3,"score":0.23901042342185974},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2187231481075287},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16700613498687744},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14202579855918884},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1263849139213562},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.1c00694","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00694","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34506132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34506132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:europepmc.org:7347925","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8457332","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8700000047683716}],"awards":[{"id":"https://openalex.org/G6047590619","display_name":null,"funder_award_id":"JP21am0101113","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G7486301854","display_name":null,"funder_award_id":"18K06619","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8221952219","display_name":null,"funder_award_id":"JPMJPR18GD","funder_id":"https://openalex.org/F4320338111","funder_display_name":"Precursory Research for Embryonic Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"},{"id":"https://openalex.org/F4320338111","display_name":"Precursory Research for Embryonic Science and Technology","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W2004997596","https://openalex.org/W2019322974","https://openalex.org/W2027109368","https://openalex.org/W2034175604","https://openalex.org/W2055989887","https://openalex.org/W2056698689","https://openalex.org/W2095148640","https://openalex.org/W2100593398","https://openalex.org/W2100643561","https://openalex.org/W2118622794","https://openalex.org/W2131197116","https://openalex.org/W2150981663","https://openalex.org/W2161572568","https://openalex.org/W2163448677","https://openalex.org/W2163761019","https://openalex.org/W2316407953","https://openalex.org/W2543839061","https://openalex.org/W2687583174","https://openalex.org/W2747261161","https://openalex.org/W2898210859","https://openalex.org/W2922733835","https://openalex.org/W3004631039","https://openalex.org/W3004982194","https://openalex.org/W3009335299","https://openalex.org/W3011416532","https://openalex.org/W3015400158","https://openalex.org/W3015608194","https://openalex.org/W3020300207","https://openalex.org/W3022734398","https://openalex.org/W3025511956","https://openalex.org/W3030688226","https://openalex.org/W3033254656","https://openalex.org/W3034228022","https://openalex.org/W3034880338","https://openalex.org/W3036607916","https://openalex.org/W3043320795","https://openalex.org/W3043427328","https://openalex.org/W3043662389","https://openalex.org/W3043789997","https://openalex.org/W3045645692","https://openalex.org/W3045828390","https://openalex.org/W3046218096","https://openalex.org/W3082311967","https://openalex.org/W3083872269","https://openalex.org/W3085912969","https://openalex.org/W3088579397","https://openalex.org/W3089666600","https://openalex.org/W3090297814","https://openalex.org/W3091122177","https://openalex.org/W3092081312","https://openalex.org/W3092736134","https://openalex.org/W3093213262","https://openalex.org/W3102090680","https://openalex.org/W3104955345","https://openalex.org/W3105514776","https://openalex.org/W3107384990","https://openalex.org/W3108457335","https://openalex.org/W3109274291","https://openalex.org/W3113182646","https://openalex.org/W3114897634","https://openalex.org/W3116015992","https://openalex.org/W3118612759","https://openalex.org/W3118698050","https://openalex.org/W3118790515","https://openalex.org/W3119310719","https://openalex.org/W3119754924","https://openalex.org/W3119996698","https://openalex.org/W3120274081","https://openalex.org/W3120746814","https://openalex.org/W3122608869","https://openalex.org/W3125256861","https://openalex.org/W3128571404","https://openalex.org/W3128735479","https://openalex.org/W3130116595","https://openalex.org/W3135003478","https://openalex.org/W3135409471","https://openalex.org/W3163116710","https://openalex.org/W3166983578","https://openalex.org/W4251872734"],"related_works":["https://openalex.org/W4319984742","https://openalex.org/W4393232466","https://openalex.org/W3126783617","https://openalex.org/W2793752299","https://openalex.org/W3093468851","https://openalex.org/W4280624450","https://openalex.org/W2121688928","https://openalex.org/W2006280461","https://openalex.org/W2732388178","https://openalex.org/W2806488847"],"abstract_inverted_index":{"SARS-CoV-2":[0],"is":[1,45,58,205],"the":[2,10,13,51,66,74,92,103,113,128,135,142,156,170,176,180,191,199],"causative":[3],"agent":[4],"of":[5,42,77,130,144,161,175,193,201],"coronavirus":[6],"(known":[7],"as":[8],"COVID-19),":[9],"virus":[11],"causing":[12],"current":[14],"pandemic.":[15],"There":[16],"are":[17,110],"ongoing":[18],"research":[19],"studies":[20,63],"to":[21,89],"develop":[22],"effective":[23],"therapeutics":[24],"and":[25,32,53,55,80,151,178],"vaccines":[26],"against":[27],"COVID-19":[28,157,172],"using":[29],"various":[30,184],"methods":[31],"many":[33],"results":[34,143,182],"have":[35,61,122,140],"been":[36],"published.":[37],"The":[38],"structure-based":[39],"drug":[40,209],"design":[41,210],"SARS-CoV-2-related":[43,131],"proteins":[44,132,150],"promising,":[46],"however,":[47],"reliable":[48],"information":[49],"regarding":[50],"structural":[52,149],"intra-":[54],"intermolecular":[56],"interactions":[57,94],"required.":[59],"We":[60,139],"conducted":[62],"based":[64],"on":[65,127,155],"fragment":[67],"molecular":[68,84,93],"orbital":[69],"(FMO)":[70],"method":[71],"for":[72,183,207,211],"calculating":[73],"electronic":[75],"structures":[76,129,196],"protein":[78,104,202],"complexes":[79],"analyzing":[81],"their":[82],"quantitative":[83],"interactions.":[85],"This":[86],"enables":[87],"us":[88],"extensively":[90],"analyze":[91],"in":[95,112,134],"residues":[96],"or":[97],"functional":[98],"group":[99],"units":[100],"acting":[101],"inside":[102],"complexes.":[105],"Such":[106],"precise":[107],"interaction":[108],"data":[109,187],"available":[111],"FMO":[114,125],"database":[115],"(FMODB)":[116],"(https://drugdesign.riken.jp/FMODB/).":[117],"Since":[118],"April":[119],"2020,":[120],"we":[121,168],"performed":[123],"several":[124],"calculations":[126],"registered":[133],"Protein":[136],"Data":[137],"Bank.":[138],"published":[141],"681":[145],"structures,":[146],"including":[147],"three":[148],"11":[152],"nonstructural":[153],"proteins,":[154],"special":[158,173],"page":[159,174],"(as":[160],"June":[162],"8,":[163],"2021).":[164],"In":[165],"this":[166],"paper,":[167],"describe":[169],"entire":[171],"FMODB":[177],"discuss":[179],"calculation":[181],"proteins.":[185],"These":[186],"not":[188],"only":[189],"aid":[190],"interpretation":[192],"experimentally":[194],"determined":[195],"but":[197],"also":[198],"understanding":[200],"functions,":[203],"which":[204],"useful":[206],"rational":[208],"COVID-19.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
