{"id":"https://openalex.org/W4210659926","doi":"https://doi.org/10.1021/acs.jcim.1c00651","title":"Property Map Collective Variable as a Useful Tool for a Force Field Correction","display_name":"Property Map Collective Variable as a Useful Tool for a Force Field Correction","publication_year":2022,"publication_date":"2022-02-03","ids":{"openalex":"https://openalex.org/W4210659926","doi":"https://doi.org/10.1021/acs.jcim.1c00651","pmid":"https://pubmed.ncbi.nlm.nih.gov/35112877"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00651","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00651","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061901298","display_name":"Dalibor Trapl","orcid":"https://orcid.org/0000-0002-3435-5841"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Dalibor Trapl","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044135877","display_name":"Martin Krupi\u010dka","orcid":"https://orcid.org/0000-0002-9132-5825"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin Krupi\u010dka","raw_affiliation_strings":["Department of Organic Chemistry, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Organic Chemistry, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065451387","display_name":"Vladim\u00edr Vi\u0161\u0148ovsk\u00fd","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Vladim\u00edr Vi\u0161\u0148ovsk\u00fd","raw_affiliation_strings":["Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075255082","display_name":"Jana Hozzov\u00e1","orcid":"https://orcid.org/0000-0001-6124-7080"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jana Hozzov\u00e1","raw_affiliation_strings":["Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005015118","display_name":"Jaroslav O\u013eha","orcid":"https://orcid.org/0000-0003-1824-468X"},"institutions":[{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jaroslav Ol\u2019ha","raw_affiliation_strings":["Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008958321","display_name":"Ale\u0161 K\u0159enek","orcid":"https://orcid.org/0000-0002-3395-3196"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210155092","display_name":"Czech Academy of Sciences, Institute of Computer Science","ror":"https://ror.org/0496n6574","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210155092"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ale\u0161 K\u0159enek","raw_affiliation_strings":["Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Masaryk University, Botanick\u00e1 554/68a, Brno 602 00, Czech Republic","institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210155092"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068377776","display_name":"Vojt\u011bch Spiwok","orcid":"https://orcid.org/0000-0001-8108-2033"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Vojt\u011bch Spiwok","raw_affiliation_strings":["Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technick\u00e1 5, Prague 6 166 28, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5068377776"],"corresponding_institution_ids":["https://openalex.org/I9073902"],"apc_list":null,"apc_paid":null,"fwci":0.2573,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49835072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"62","issue":"3","first_page":"567","last_page":"576"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11845","display_name":"Cancer therapeutics and mechanisms","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.8943322896957397},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5890936851501465},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.5531929731369019},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5287061929702759},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.5072891116142273},{"id":"https://openalex.org/keywords/parametrization","display_name":"Parametrization (atmospheric modeling)","score":0.46559250354766846},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4606893062591553},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.42116352915763855},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39057210087776184},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.32778114080429077},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.32161271572113037},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31390389800071716},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.2102975845336914},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1572645902633667},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.13491320610046387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10318255424499512},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.07272768020629883}],"concepts":[{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.8943322896957397},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5890936851501465},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.5531929731369019},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5287061929702759},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.5072891116142273},{"id":"https://openalex.org/C202887219","wikidata":"https://www.wikidata.org/wiki/Q3895221","display_name":"Parametrization (atmospheric modeling)","level":3,"score":0.46559250354766846},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4606893062591553},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.42116352915763855},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39057210087776184},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.32778114080429077},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.32161271572113037},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31390389800071716},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.2102975845336914},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1572645902633667},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.13491320610046387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10318255424499512},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.07272768020629883},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C74902906","wikidata":"https://www.wikidata.org/wiki/Q1190858","display_name":"Radiative transfer","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.1c00651","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00651","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:35112877","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35112877","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2972937806","display_name":null,"funder_award_id":"LM2015085","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G5412214377","display_name":null,"funder_award_id":"9-16857S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5470076797","display_name":null,"funder_award_id":"LM2018140","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G954903593","display_name":null,"funder_award_id":"LM2018131","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W136462871","https://openalex.org/W1031578623","https://openalex.org/W1971617876","https://openalex.org/W1974030600","https://openalex.org/W1976499671","https://openalex.org/W1976761771","https://openalex.org/W1979847955","https://openalex.org/W1994103685","https://openalex.org/W1995907662","https://openalex.org/W1998404217","https://openalex.org/W2012238745","https://openalex.org/W2015688756","https://openalex.org/W2025444507","https://openalex.org/W2029186981","https://openalex.org/W2031273789","https://openalex.org/W2037159954","https://openalex.org/W2043759232","https://openalex.org/W2049902088","https://openalex.org/W2051629080","https://openalex.org/W2057477511","https://openalex.org/W2057806291","https://openalex.org/W2060433756","https://openalex.org/W2067174909","https://openalex.org/W2069123478","https://openalex.org/W2077467665","https://openalex.org/W2091572890","https://openalex.org/W2092157292","https://openalex.org/W2094279870","https://openalex.org/W2098943363","https://openalex.org/W2106102455","https://openalex.org/W2107803322","https://openalex.org/W2115577316","https://openalex.org/W2122199548","https://openalex.org/W2131288855","https://openalex.org/W2135732933","https://openalex.org/W2144288821","https://openalex.org/W2146411229","https://openalex.org/W2147993766","https://openalex.org/W2149655632","https://openalex.org/W2161605421","https://openalex.org/W2165779834","https://openalex.org/W2222589778","https://openalex.org/W2293232984","https://openalex.org/W2335804930","https://openalex.org/W2472803348","https://openalex.org/W2541404351","https://openalex.org/W2555870966","https://openalex.org/W2566222176","https://openalex.org/W2596967961","https://openalex.org/W2599759970","https://openalex.org/W2605801743","https://openalex.org/W2739439285","https://openalex.org/W2790470680","https://openalex.org/W2795361658","https://openalex.org/W2898021236","https://openalex.org/W2904141086","https://openalex.org/W2912818999","https://openalex.org/W2935159162","https://openalex.org/W2949836140","https://openalex.org/W2970740744","https://openalex.org/W3013990447","https://openalex.org/W3027308092","https://openalex.org/W3046216634","https://openalex.org/W3083787461","https://openalex.org/W3086801715","https://openalex.org/W3133931590"],"related_works":["https://openalex.org/W3127534742","https://openalex.org/W2028501277","https://openalex.org/W2002038078","https://openalex.org/W2022269912","https://openalex.org/W4366465732","https://openalex.org/W2811043963","https://openalex.org/W2161972019","https://openalex.org/W1998915375","https://openalex.org/W4321013117","https://openalex.org/W2082128336"],"abstract_inverted_index":{"The":[0],"accuracy":[1,8],"of":[2,9,22,35,51,86,114,125],"biomolecular":[3],"simulations":[4],"depends":[5],"on":[6],"the":[7,28,52,61,72,84,95,106,153,159,164,182,195],"an":[10,68],"empirical":[11],"molecular":[12,87],"mechanics":[13],"potential":[14,29],"known":[15,97],"as":[16,98,169],"a":[17,20,43,58,99,111,122,170,191],"force":[18,36,63,77,107,116,136,148,160,183],"field:":[19],"set":[21],"parameters":[23],"and":[24,138],"expressions":[25],"to":[26,46,56,60,70,145,150,177],"estimate":[27,71],"from":[30],"atomic":[31],"coordinates.":[32],"Accurate":[33],"parametrization":[34],"fields":[37],"for":[38,121,163,180,185],"small":[39,123],"organic":[40],"molecules":[41],"is":[42,55,81,143,199],"challenge":[44],"due":[45],"their":[47],"high":[48],"diversity.":[49],"One":[50],"possible":[53,144],"approaches":[54],"apply":[57],"correction":[59,79,109,118,162],"existing":[62],"fields.":[64],"Here,":[65],"we":[66,104,132,139],"propose":[67],"approach":[69],"density":[73],"functional":[74],"theory":[75],"(DFT)-derived":[76],"field":[78,108,117,149,161,184],"which":[80],"calculated":[82,119],"during":[83],"run":[85],"dynamics":[88],"without":[89],"significantly":[90],"affecting":[91],"its":[92],"speed.":[93],"Using":[94],"formula":[96],"property":[100],"map":[101],"collective":[102],"variable,":[103],"approximate":[105],"by":[110],"weighted":[112],"average":[113],"this":[115,130,197],"only":[120],"series":[124],"reference":[126],"structures.":[127],"To":[128],"validate":[129],"method,":[131],"used":[133],"seven":[134],"AMBER":[135],"fields,":[137],"show":[140],"how":[141],"it":[142],"convert":[146],"one":[147],"behave":[151],"like":[152],"other":[154],"one.":[155],"We":[156,189],"also":[157],"present":[158],"important":[165],"anticancer":[166],"drug":[167],"Imatinib":[168],"use":[171],"case":[172],"example.":[173],"Our":[174],"method":[175],"appears":[176],"be":[178],"suitable":[179],"adjusting":[181],"general":[186],"drug-like":[187],"molecules.":[188],"provide":[190],"pipeline":[192,198],"that":[193],"generates":[194],"correction;":[196],"available":[200],"at":[201],"https://pmcvff-correction.cerit-sc.cz/.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
