{"id":"https://openalex.org/W3206587336","doi":"https://doi.org/10.1021/acs.jcim.1c00511","title":"Improving Structure-Based Virtual Screening with Ensemble Docking and Machine Learning","display_name":"Improving Structure-Based Virtual Screening with Ensemble Docking and Machine Learning","publication_year":2021,"publication_date":"2021-10-15","ids":{"openalex":"https://openalex.org/W3206587336","doi":"https://doi.org/10.1021/acs.jcim.1c00511","mag":"3206587336","pmid":"https://pubmed.ncbi.nlm.nih.gov/34652141"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00511","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00511","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8865842","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087206670","display_name":"Joel Ricci-L\u00f3pez","orcid":"https://orcid.org/0000-0001-9803-1494"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Joel Ricci-Lopez","raw_affiliation_strings":["Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), Ensenada, Baja California C.P. 22860, Mexico","Centro de Nanociencias y Nanotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ensenada, Baja California C.P. 22860, Mexico"],"raw_orcid":"https://orcid.org/0000-0001-9803-1494","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), Ensenada, Baja California C.P. 22860, Mexico","institution_ids":["https://openalex.org/I64663401"]},{"raw_affiliation_string":"Centro de Nanociencias y Nanotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ensenada, Baja California C.P. 22860, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066834293","display_name":"Sergio A. \u00c1guila","orcid":"https://orcid.org/0000-0002-8497-2821"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Sergio A. Aguila","raw_affiliation_strings":["Centro de Nanociencias y Nanotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ensenada, Baja California C.P. 22860, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Nanociencias y Nanotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Ensenada, Baja California C.P. 22860, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049982297","display_name":"Michael K. Gilson","orcid":"https://orcid.org/0000-0002-3375-1738"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael K. Gilson","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, La Jolla, San Diego, California 92093, United States"],"raw_orcid":"https://orcid.org/0000-0002-3375-1738","affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, La Jolla, San Diego, California 92093, United States","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075390665","display_name":"Carlos A. Brizuela","orcid":"https://orcid.org/0000-0003-4621-0380"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Carlos A. Brizuela","raw_affiliation_strings":["Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), Ensenada, Baja California C.P. 22860, Mexico"],"raw_orcid":"https://orcid.org/0000-0003-4621-0380","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), Ensenada, Baja California C.P. 22860, Mexico","institution_ids":["https://openalex.org/I64663401"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066834293","https://openalex.org/A5075390665"],"corresponding_institution_ids":["https://openalex.org/I64663401","https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":6.8492,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.97356551,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"61","issue":"11","first_page":"5362","last_page":"5376"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.884809136390686},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7310512065887451},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.6742382049560547},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6280213594436646},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5704021453857422},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.5663516521453857},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5102651119232178},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3892202377319336},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.2625778913497925},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20420020818710327},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.144596666097641}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.884809136390686},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7310512065887451},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.6742382049560547},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6280213594436646},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5704021453857422},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.5663516521453857},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5102651119232178},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3892202377319336},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2625778913497925},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20420020818710327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.144596666097641},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.1c00511","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00511","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34652141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34652141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8865842","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8865842","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8865842","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8865842","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7163924668","display_name":null,"funder_award_id":"PAPIIT-DGAPA-UNAM-IG200320","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"},{"id":"https://openalex.org/G7323308992","display_name":null,"funder_award_id":"A1-S-20638","funder_id":"https://openalex.org/F4320334834","funder_display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada, Baja California"},{"id":"https://openalex.org/G7450259425","display_name":null,"funder_award_id":"LANCAD-UNAM-DGTIC-286","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"}],"funders":[{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320334834","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada, Baja California","ror":"https://ror.org/059ex5q34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":119,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W566092241","https://openalex.org/W1496929357","https://openalex.org/W1536826708","https://openalex.org/W1559298968","https://openalex.org/W1565746575","https://openalex.org/W1645816215","https://openalex.org/W1950993160","https://openalex.org/W1966879873","https://openalex.org/W1967363853","https://openalex.org/W1980455221","https://openalex.org/W1986240377","https://openalex.org/W1992947643","https://openalex.org/W1993285168","https://openalex.org/W1993436046","https://openalex.org/W2001722230","https://openalex.org/W2005445463","https://openalex.org/W2007054671","https://openalex.org/W2007218072","https://openalex.org/W2008518939","https://openalex.org/W2008732224","https://openalex.org/W2014538668","https://openalex.org/W2016944307","https://openalex.org/W2020084080","https://openalex.org/W2021737034","https://openalex.org/W2022849573","https://openalex.org/W2022998385","https://openalex.org/W2026141986","https://openalex.org/W2028629022","https://openalex.org/W2032666584","https://openalex.org/W2041046009","https://openalex.org/W2041282815","https://openalex.org/W2042110087","https://openalex.org/W2048612759","https://openalex.org/W2057846043","https://openalex.org/W2061305961","https://openalex.org/W2061799302","https://openalex.org/W2070493638","https://openalex.org/W2071557543","https://openalex.org/W2072180710","https://openalex.org/W2073792037","https://openalex.org/W2075802963","https://openalex.org/W2076932757","https://openalex.org/W2079153029","https://openalex.org/W2079331631","https://openalex.org/W2084485490","https://openalex.org/W2087466582","https://openalex.org/W2091359669","https://openalex.org/W2091515885","https://openalex.org/W2092175995","https://openalex.org/W2092693813","https://openalex.org/W2093814531","https://openalex.org/W2101234009","https://openalex.org/W2105668062","https://openalex.org/W2115774588","https://openalex.org/W2123681603","https://openalex.org/W2125828540","https://openalex.org/W2126103216","https://openalex.org/W2127290087","https://openalex.org/W2127760066","https://openalex.org/W2128983966","https://openalex.org/W2130479394","https://openalex.org/W2134878116","https://openalex.org/W2141603742","https://openalex.org/W2148512505","https://openalex.org/W2160331326","https://openalex.org/W2161134038","https://openalex.org/W2165565773","https://openalex.org/W2168745915","https://openalex.org/W2169678694","https://openalex.org/W2184299470","https://openalex.org/W2214665483","https://openalex.org/W2271736303","https://openalex.org/W2295598076","https://openalex.org/W2332712348","https://openalex.org/W2340614189","https://openalex.org/W2388080941","https://openalex.org/W2409258413","https://openalex.org/W2477561385","https://openalex.org/W2493171048","https://openalex.org/W2520646257","https://openalex.org/W2526925775","https://openalex.org/W2561754807","https://openalex.org/W2583907533","https://openalex.org/W2604303204","https://openalex.org/W2608559058","https://openalex.org/W2609826536","https://openalex.org/W2729949860","https://openalex.org/W2742394249","https://openalex.org/W2774371249","https://openalex.org/W2793989982","https://openalex.org/W2794774007","https://openalex.org/W2802933734","https://openalex.org/W2902240649","https://openalex.org/W2918239264","https://openalex.org/W2921974962","https://openalex.org/W2925328267","https://openalex.org/W2941080187","https://openalex.org/W2949923262","https://openalex.org/W2955986556","https://openalex.org/W2963368601","https://openalex.org/W2963833291","https://openalex.org/W2969325194","https://openalex.org/W2971801381","https://openalex.org/W2990427812","https://openalex.org/W3002058234","https://openalex.org/W3020257619","https://openalex.org/W3023085122","https://openalex.org/W3025780224","https://openalex.org/W3087491618","https://openalex.org/W3100344990","https://openalex.org/W3100704554","https://openalex.org/W3102476541","https://openalex.org/W3104705366","https://openalex.org/W4210388672","https://openalex.org/W4211161064","https://openalex.org/W4250664506","https://openalex.org/W4399584589","https://openalex.org/W6813345622"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W4310018788","https://openalex.org/W4398796548","https://openalex.org/W2057846043","https://openalex.org/W2336040088","https://openalex.org/W2027065525","https://openalex.org/W2750247885","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2093426296"],"abstract_inverted_index":{"One":[0],"of":[1,5,13,49,53,63,128,182,228],"the":[2,11,14,36,40,58,75,81,95,106,119,125,155,202,212,226,232],"main":[3],"challenges":[4],"structure-based":[6],"virtual":[7],"screening":[8],"(SBVS)":[9],"is":[10,39,67,88],"incorporation":[12],"receptor's":[15,37],"flexibility,":[16],"as":[17,43,138],"its":[18],"explicit":[19],"representation":[20],"in":[21],"every":[22],"docking":[23,47,59,77,97,121,175,234],"run":[24],"implies":[25],"a":[26,31,51],"high":[27],"computational":[28],"cost.":[29],"Therefore,":[30],"common":[32,86],"alternative":[33],"to":[34,73,79,89,93,161,185,230],"include":[35],"flexibility":[38],"approach":[41],"known":[42],"ensemble":[44,76,96,120,233],"docking.":[45,219],"Ensemble":[46,174],"consists":[48],"using":[50,113],"set":[52],"receptor":[54],"conformations":[55],"and":[56,144,169,171,187,194,210],"performing":[57],"assays":[60],"over":[61,118],"each":[62],"them.":[64],"However,":[65],"there":[66],"still":[68],"no":[69],"agreement":[70],"on":[71],"how":[72],"combine":[74],"results":[78,122,176,199],"obtain":[80],"final":[82],"ligand":[83],"ranking.":[84],"A":[85],"choice":[87],"use":[90],"consensus":[91,208],"strategies":[92,101,209],"aggregate":[94],"scores,":[98],"but":[99],"these":[100],"exhibit":[102],"slight":[103],"improvement":[104],"regarding":[105],"single-structure":[107,218],"approach.":[108],"Here,":[109],"we":[110],"claim":[111],"that":[112,201,224],"machine":[114],"learning":[115],"(ML)":[116],"methodologies":[117],"could":[123],"improve":[124,231],"predictive":[126],"power":[127],"SBVS.":[129],"To":[130],"test":[131],"this":[132],"hypothesis,":[133],"four":[134],"proteins":[135],"were":[136,149,177],"selected":[137],"study":[139],"cases:":[140],"CDK2,":[141],"FXa,":[142],"EGFR,":[143],"HSP90.":[145],"Protein":[146],"conformational":[147],"ensembles":[148],"built":[150],"from":[151],"crystallographic":[152],"structures,":[153],"whereas":[154],"evaluated":[156],"compound":[157],"library":[158],"comprised":[159],"up":[160],"three":[162],"benchmarking":[163],"data":[164],"sets":[165],"(DUD,":[166],"DEKOIS":[167],"2.0,":[168],"CSAR-2012)":[170],"cocrystallized":[172],"molecules.":[173],"processed":[178],"through":[179],"30":[180],"repetitions":[181],"4-fold":[183],"cross-validation":[184],"train":[186],"validate":[188],"two":[189],"ML":[190,203,229],"classifiers:":[191],"logistic":[192],"regression":[193],"gradient":[195],"boosting":[196],"trees.":[197],"Our":[198],"indicate":[200],"classifiers":[204],"significantly":[205],"outperform":[206],"traditional":[207],"even":[211],"best":[213],"performance":[214],"case":[215],"achieved":[216],"with":[217],"We":[220],"provide":[221],"statistical":[222],"evidence":[223],"supports":[225],"effectiveness":[227],"performance.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-30T09:04:40.226872","created_date":"2025-10-10T00:00:00"}
