{"id":"https://openalex.org/W3185701646","doi":"https://doi.org/10.1021/acs.jcim.1c00454","title":"ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand\u2013Protein Binding Sites for Drug Design","display_name":"ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand\u2013Protein Binding Sites for Drug Design","publication_year":2021,"publication_date":"2021-07-28","ids":{"openalex":"https://openalex.org/W3185701646","doi":"https://doi.org/10.1021/acs.jcim.1c00454","mag":"3185701646","pmid":"https://pubmed.ncbi.nlm.nih.gov/34319727"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00454","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00454","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007997462","display_name":"Janez Konc","orcid":"https://orcid.org/0000-0003-0160-3375"},"institutions":[{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Janez Konc","raw_affiliation_strings":["Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0003-0160-3375","affiliations":[{"raw_affiliation_string":"Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032088268","display_name":"Samo Le\u0161nik","orcid":"https://orcid.org/0000-0002-0613-6959"},"institutions":[{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Samo Le\u0161nik","raw_affiliation_strings":["Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007096285","display_name":"Bla\u017e \u0160krlj","orcid":"https://orcid.org/0000-0002-9916-8756"},"institutions":[{"id":"https://openalex.org/I4210113529","display_name":"Jo\u017eef Stefan International Postgraduate School","ror":"https://ror.org/01hdkb925","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210113529"]},{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Bla\u017e \u0160krlj","raw_affiliation_strings":["Jozef Stefan International Postgraduate School, Jamova cesta 39, SI-1000 Ljubljana, Slovenia","Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jozef Stefan International Postgraduate School, Jamova cesta 39, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210113529"]},{"raw_affiliation_string":"Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074495088","display_name":"Du\u0161anka Jane\u017ei\u010d","orcid":"https://orcid.org/0000-0003-4067-0116"},"institutions":[{"id":"https://openalex.org/I118905719","display_name":"University of Primorska","ror":"https://ror.org/05xefg082","country_code":"SI","type":"education","lineage":["https://openalex.org/I118905719"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Du\u0161anka Jane\u017ei\u010d","raw_affiliation_strings":["Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagolja\u0161ka ulica 8, SI-6000 Koper, Slovenia"],"raw_orcid":"https://orcid.org/0000-0003-4067-0116","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagolja\u0161ka ulica 8, SI-6000 Koper, Slovenia","institution_ids":["https://openalex.org/I118905719"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007997462","https://openalex.org/A5074495088"],"corresponding_institution_ids":["https://openalex.org/I118905719","https://openalex.org/I4210152560"],"apc_list":null,"apc_paid":null,"fwci":3.1796,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.92717399,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"61","issue":"8","first_page":"4097","last_page":"4107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.9400904774665833},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7118604183197021},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5722741484642029},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4526117742061615},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4370215833187103},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.42476311326026917},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3348585367202759},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2684326767921448},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2467697560787201},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23947075009346008}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.9400904774665833},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7118604183197021},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5722741484642029},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4526117742061615},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4370215833187103},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.42476311326026917},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3348585367202759},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2684326767921448},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2467697560787201},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23947075009346008},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.1c00454","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00454","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34319727","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34319727","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5299999713897705,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2070509478","display_name":null,"funder_award_id":"J1-1715","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G4294235106","display_name":null,"funder_award_id":"J1-9186","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G4652101948","display_name":null,"funder_award_id":"N1-0142","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G6946677552","display_name":null,"funder_award_id":"L7-8269","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G7168838956","display_name":null,"funder_award_id":"N1-0209","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W631871202","https://openalex.org/W1606947757","https://openalex.org/W1968319881","https://openalex.org/W1973462822","https://openalex.org/W1979914800","https://openalex.org/W1980969309","https://openalex.org/W1982309045","https://openalex.org/W1989814214","https://openalex.org/W2004175162","https://openalex.org/W2012034410","https://openalex.org/W2012963722","https://openalex.org/W2019701333","https://openalex.org/W2019951137","https://openalex.org/W2039127550","https://openalex.org/W2042572511","https://openalex.org/W2044703506","https://openalex.org/W2052381458","https://openalex.org/W2119470100","https://openalex.org/W2123578540","https://openalex.org/W2124676068","https://openalex.org/W2134967712","https://openalex.org/W2138770756","https://openalex.org/W2163816950","https://openalex.org/W2165535543","https://openalex.org/W2190199302","https://openalex.org/W2293744162","https://openalex.org/W2320390459","https://openalex.org/W2399060478","https://openalex.org/W2559719101","https://openalex.org/W2587598315","https://openalex.org/W2613478649","https://openalex.org/W2745395435","https://openalex.org/W2769925250","https://openalex.org/W2772720275","https://openalex.org/W2887981960","https://openalex.org/W2898364362","https://openalex.org/W2899070097","https://openalex.org/W2900167333","https://openalex.org/W2902812092","https://openalex.org/W2905084846","https://openalex.org/W2920937310","https://openalex.org/W2953110573","https://openalex.org/W3011996119","https://openalex.org/W3133596142","https://openalex.org/W3148554359"],"related_works":["https://openalex.org/W1583884134","https://openalex.org/W2808384273","https://openalex.org/W4225714443","https://openalex.org/W4256111125","https://openalex.org/W4307042101","https://openalex.org/W4230770129","https://openalex.org/W759941183","https://openalex.org/W2497061382","https://openalex.org/W2022220038","https://openalex.org/W2357049710"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"a":[3,34,87],"new":[4,35],"system,":[5],"ProBiS-Dock,":[6],"which":[7],"can":[8],"be":[9,120,141],"used":[10,31],"to":[11,32,51,73,123],"determine":[12],"the":[13,39,45,71,103,107,127,130],"different":[14,80],"types":[15],"of":[16,47,94,102,129],"protein":[17,104],"binding":[18,24,36,48,67,98],"sites":[19,25,49,68,99],"for":[20,44,54],"small":[21],"ligands.":[22],"The":[23,57,83,116],"identified":[26],"this":[27],"way":[28],"are":[29],"then":[30],"construct":[33],"site":[37],"database,":[38],"ProBiS-Dock":[40,85,117],"Database,":[41,86],"that":[42,92,138],"allows":[43],"ranking":[46],"according":[50],"their":[52],"utility":[53],"drug":[55,76,144],"development.":[56],"newly":[58],"constructed":[59],"database":[60],"currently":[61],"has":[62],"more":[63],"than":[64],"1.4":[65],"million":[66],"and":[69,90,134],"offers":[70],"possibility":[72],"investigate":[74],"potential":[75],"targets":[77],"originating":[78],"from":[79],"biological":[81],"species.":[82],"interactive":[84],"web":[88],"server":[89],"repository":[91],"consists":[93],"all":[95,101],"small-molecule":[96],"ligand":[97],"in":[100,106,143],"structures":[105],"Protein":[108,131],"Data":[109,132],"Bank,":[110,133],"is":[111,137],"freely":[112],"available":[113],"at":[114],"http://probis-dock-database.insilab.org.":[115],"Database":[118],"will":[119,140],"regularly":[121],"updated":[122],"keep":[124],"pace":[125],"with":[126],"growth":[128],"our":[135],"anticipation":[136],"it":[139],"useful":[142],"discovery.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
