{"id":"https://openalex.org/W3186391158","doi":"https://doi.org/10.1021/acs.jcim.1c00404","title":"Strengths and Weaknesses of Docking Simulations in the SARS-CoV-2 Era: the Main Protease (Mpro) Case Study","display_name":"Strengths and Weaknesses of Docking Simulations in the SARS-CoV-2 Era: the Main Protease (Mpro) Case Study","publication_year":2021,"publication_date":"2021-07-27","ids":{"openalex":"https://openalex.org/W3186391158","doi":"https://doi.org/10.1021/acs.jcim.1c00404","mag":"3186391158","pmid":"https://pubmed.ncbi.nlm.nih.gov/34313128"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00404","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00404","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11336/149785","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087897560","display_name":"Manuel A. Llanos","orcid":"https://orcid.org/0000-0002-9120-4951"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Manuel A. Llanos","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019009056","display_name":"Melisa E. Gantner","orcid":"https://orcid.org/0000-0001-7491-4268"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Melisa E. Gantner","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":"https://orcid.org/0000-0001-7491-4268","affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100774261","display_name":"Santiago Rodr\u0131\u0301guez","orcid":"https://orcid.org/0000-0002-7378-3945"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Santiago Rodriguez","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067153406","display_name":"Lucas N. Alberca","orcid":"https://orcid.org/0000-0002-2819-2046"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Lucas N. Alberca","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022534497","display_name":"Carolina L. Bellera","orcid":"https://orcid.org/0000-0002-1237-4929"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Carolina L. Bellera","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":"https://orcid.org/0000-0002-1237-4929","affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002140696","display_name":"Alan Talevi","orcid":"https://orcid.org/0000-0003-3178-826X"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Alan Talevi","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":"https://orcid.org/0000-0003-3178-826X","affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055815238","display_name":"Luciana Gavernet","orcid":"https://orcid.org/0000-0001-9285-3788"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Luciana Gavernet","raw_affiliation_strings":["Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina"],"raw_orcid":"https://orcid.org/0000-0001-9285-3788","affiliations":[{"raw_affiliation_string":"Laboratory of Bioactive Research and Development (LIDeB), Department of Biological Sciences, Faculty of Exact Sciences, National University of La Plata (UNLP), 47&115, La Plata (B1900ADU), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5055815238"],"corresponding_institution_ids":["https://openalex.org/I874386039"],"apc_list":null,"apc_paid":null,"fwci":5.4135,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.96364251,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"61","issue":"8","first_page":"3758","last_page":"3770"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8965492248535156},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7145815491676331},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6544486284255981},{"id":"https://openalex.org/keywords/strengths-and-weaknesses","display_name":"Strengths and weaknesses","score":0.5020332336425781},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4249637722969055},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38697701692581177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3700404167175293},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.358227014541626},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23120057582855225},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1589617133140564},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08317527174949646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07744532823562622}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8965492248535156},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7145815491676331},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6544486284255981},{"id":"https://openalex.org/C63882131","wikidata":"https://www.wikidata.org/wiki/Q17122954","display_name":"Strengths and weaknesses","level":2,"score":0.5020332336425781},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4249637722969055},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38697701692581177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3700404167175293},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.358227014541626},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23120057582855225},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1589617133140564},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08317527174949646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07744532823562622},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.1c00404","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00404","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34313128","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34313128","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:ri.conicet.gov.ar:11336/149785","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/149785","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:ri.conicet.gov.ar:11336/149785","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/149785","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G2126305419","display_name":null,"funder_award_id":"PICT 2017-0643","funder_id":"https://openalex.org/F4320337954","funder_display_name":"Fondo para la Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"},{"id":"https://openalex.org/G8956994266","display_name":null,"funder_award_id":"PICT 2016-0165","funder_id":"https://openalex.org/F4320337954","funder_display_name":"Fondo para la Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"}],"funders":[{"id":"https://openalex.org/F4320322141","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12"},{"id":"https://openalex.org/F4320337954","display_name":"Fondo para la Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","ror":"https://ror.org/03stxzb56"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W1507887256","https://openalex.org/W1757990252","https://openalex.org/W1941251942","https://openalex.org/W1971253368","https://openalex.org/W1979966120","https://openalex.org/W1980949045","https://openalex.org/W1985588649","https://openalex.org/W1987211834","https://openalex.org/W1987863328","https://openalex.org/W1994874881","https://openalex.org/W1997409847","https://openalex.org/W2009423060","https://openalex.org/W2013085020","https://openalex.org/W2026141986","https://openalex.org/W2028629022","https://openalex.org/W2030686695","https://openalex.org/W2036927874","https://openalex.org/W2039425860","https://openalex.org/W2070911978","https://openalex.org/W2071717945","https://openalex.org/W2072682248","https://openalex.org/W2093221728","https://openalex.org/W2093426296","https://openalex.org/W2094367634","https://openalex.org/W2098767742","https://openalex.org/W2102377211","https://openalex.org/W2105668062","https://openalex.org/W2108389384","https://openalex.org/W2111581388","https://openalex.org/W2115339329","https://openalex.org/W2120898782","https://openalex.org/W2127760066","https://openalex.org/W2134967712","https://openalex.org/W2138337932","https://openalex.org/W2149302140","https://openalex.org/W2163187547","https://openalex.org/W2167801161","https://openalex.org/W2169678694","https://openalex.org/W2334483166","https://openalex.org/W2519703809","https://openalex.org/W2550887636","https://openalex.org/W2583187043","https://openalex.org/W2605354659","https://openalex.org/W2608559058","https://openalex.org/W2729949860","https://openalex.org/W2767891136","https://openalex.org/W2767969791","https://openalex.org/W2792758786","https://openalex.org/W2888400067","https://openalex.org/W2899070097","https://openalex.org/W2900090807","https://openalex.org/W2916487223","https://openalex.org/W2925328267","https://openalex.org/W2949305189","https://openalex.org/W2972480226","https://openalex.org/W2982145277","https://openalex.org/W2984933828","https://openalex.org/W3003217347","https://openalex.org/W3009970748","https://openalex.org/W3011701533","https://openalex.org/W3013223828","https://openalex.org/W3013426051","https://openalex.org/W3015271526","https://openalex.org/W3015608194","https://openalex.org/W3018023298","https://openalex.org/W3023085122","https://openalex.org/W3023638780","https://openalex.org/W3024671705","https://openalex.org/W3025053074","https://openalex.org/W3025838913","https://openalex.org/W3026595850","https://openalex.org/W3027690603","https://openalex.org/W3028648654","https://openalex.org/W3028952754","https://openalex.org/W3037759458","https://openalex.org/W3037832460","https://openalex.org/W3040116040","https://openalex.org/W3042370463","https://openalex.org/W3043660595","https://openalex.org/W3045038743","https://openalex.org/W3045130610","https://openalex.org/W3045996070","https://openalex.org/W3046759714","https://openalex.org/W3047461286","https://openalex.org/W3048377799","https://openalex.org/W3048754087","https://openalex.org/W3049478797","https://openalex.org/W3092125766","https://openalex.org/W3093152392","https://openalex.org/W3094560806","https://openalex.org/W3104452157","https://openalex.org/W3113182646","https://openalex.org/W3114238954","https://openalex.org/W3117359486","https://openalex.org/W3120361527","https://openalex.org/W3126088134","https://openalex.org/W3130155181","https://openalex.org/W3137172923","https://openalex.org/W4234423475","https://openalex.org/W4243601081","https://openalex.org/W4249940219"],"related_works":["https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2057846043","https://openalex.org/W2093426296","https://openalex.org/W2336040088","https://openalex.org/W4402273478","https://openalex.org/W2594726310"],"abstract_inverted_index":{"The":[0,102],"scientific":[1],"community":[2],"is":[3,206],"working":[4],"against":[5],"the":[6,19,28,42,52,56,59,65,78,85,105,116,132,137,142,153,179,223,231,244,248,262,271,283,286],"clock":[7],"to":[8,13,30,135,166,212,241,269,281],"arrive":[9],"at":[10,110],"therapeutic":[11],"interventions":[12],"treat":[14],"patients":[15],"with":[16,41],"COVID-19.":[17],"Among":[18],"strategies":[20],"for":[21],"drug":[22,257],"discovery,":[23],"virtual":[24,92,99,138,237],"screening":[25,93,100,139,186,204,238],"approaches":[26],"have":[27,198],"capacity":[29],"search":[31],"potential":[32],"hits":[33,155],"within":[34],"millions":[35],"of":[36,58,64,69,80,84,104,115,126,131,141,152,161,173,181,218,225,230,264,273,285],"chemical":[37],"structures":[38],"in":[39,98,113],"days,":[40],"appropriate":[43],"computing":[44],"infrastructure.":[45],"In":[46],"this":[47,158,265],"article,":[48],"we":[49,121,189],"first":[50],"analyzed":[51],"published":[53,260],"research":[54],"targeting":[55],"inhibition":[57],"main":[60],"protease":[61],"(Mpro),":[62],"one":[63],"most":[66],"studied":[67],"targets":[68],"SARS-CoV-2,":[70],"by":[71,247],"docking-based":[72],"methods.":[73,143,287],"An":[74],"alarming":[75],"finding":[76],"was":[77,108],"lack":[79],"an":[81,227],"adequate":[82,228],"validation":[83,172,229],"docking":[86,106,176,196,232],"protocols":[87,107,197,233],"(i.e.,":[88],"pose":[89,183,201],"prediction":[90,184],"and":[91,185,240,276],"accuracy)":[94],"before":[95,234,250],"applying":[96],"them":[97],"campaigns.":[101],"performance":[103,171],"tested":[109,195],"some":[111,149],"level":[112],"57.7%":[114],"168":[117],"investigations":[118,259],"analyzed.":[119],"However,":[120],"found":[122,190],"only":[123,145],"three":[124,174],"examples":[125],"a":[127,169,199,215],"complete":[128],"retrospective":[129,170],"analysis":[130,180],"scoring":[133,278],"functions":[134],"quantify":[136],"accuracy":[140,205,284],"Moreover,":[144],"two":[146],"publications":[147],"reported":[148],"experimental":[150],"evaluation":[151],"proposed":[154],"until":[156],"preparing":[157],"manuscript.":[159],"All":[160],"these":[162],"findings":[163],"led":[164],"us":[165,268],"carry":[167],"out":[168,236],"different":[175],"protocols,":[177],"through":[178],"their":[182,203],"accuracy.":[187],"Surprisingly,":[188],"that":[191],"even":[192],"though":[193],"all":[194],"good":[200],"prediction,":[202],"quite":[207],"limited":[208],"as":[209,279],"they":[210],"fail":[211],"correctly":[213],"rank":[214],"test":[216],"set":[217],"compounds.":[219],"These":[220],"results":[221],"highlight":[222],"importance":[224],"conducting":[226],"carrying":[235],"campaigns,":[239],"experimentally":[242],"confirm":[243],"predictions":[245],"made":[246],"models":[249],"drawing":[251],"bold":[252],"conclusions.":[253],"Finally,":[254],"successful":[255],"structure-based":[256],"discovery":[258],"during":[261],"redaction":[263],"manuscript":[266],"allow":[267],"propose":[270],"inclusion":[272],"target":[274],"flexibility":[275],"consensus":[277],"alternatives":[280],"improve":[282]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":5}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
