{"id":"https://openalex.org/W3175811284","doi":"https://doi.org/10.1021/acs.jcim.1c00162","title":"Chemical Space, Scaffolds, and Halogenated Compounds of CMNPD: A Comprehensive Chemoinformatic Analysis","display_name":"Chemical Space, Scaffolds, and Halogenated Compounds of CMNPD: A Comprehensive Chemoinformatic Analysis","publication_year":2021,"publication_date":"2021-06-22","ids":{"openalex":"https://openalex.org/W3175811284","doi":"https://doi.org/10.1021/acs.jcim.1c00162","mag":"3175811284","pmid":"https://pubmed.ncbi.nlm.nih.gov/34156848"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.1c00162","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00162","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081144095","display_name":"Ningfeng Liu","orcid":"https://orcid.org/0000-0002-2378-7809"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningfeng Liu","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025102607","display_name":"Junyong Lai","orcid":"https://orcid.org/0000-0002-2668-8013"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyong Lai","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046019913","display_name":"Chuanyu Lyu","orcid":"https://orcid.org/0000-0003-2871-9407"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuanyu Lyu","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113759200","display_name":"Bo Qiang","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Qiang","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026517548","display_name":"Heyu Wang","orcid":"https://orcid.org/0000-0002-3298-6770"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Heyu Wang","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050950821","display_name":"Hongwei Jin","orcid":"https://orcid.org/0009-0007-7899-3603"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongwei Jin","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089487649","display_name":"Liangren Zhang","orcid":"https://orcid.org/0000-0002-7362-9497"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangren Zhang","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049692186","display_name":"Zhenming Liu","orcid":"https://orcid.org/0000-0002-8993-4015"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhenming Liu","raw_affiliation_strings":["State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, 100191 Beijing, P. R. China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5049692186"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":null,"apc_paid":null,"fwci":0.8096,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.72584474,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"61","issue":"7","first_page":"3323","last_page":"3336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11340","display_name":"Marine Sponges and Natural Products","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.7986728549003601},{"id":"https://openalex.org/keywords/halogen","display_name":"Halogen","score":0.5321084260940552},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5311065316200256},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.5241689682006836},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.47186940908432007},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.37206393480300903},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.18720361590385437},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.1017160415649414},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06283271312713623}],"concepts":[{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.7986728549003601},{"id":"https://openalex.org/C46062151","wikidata":"https://www.wikidata.org/wiki/Q19605","display_name":"Halogen","level":3,"score":0.5321084260940552},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5311065316200256},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.5241689682006836},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.47186940908432007},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.37206393480300903},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.18720361590385437},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.1017160415649414},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06283271312713623},{"id":"https://openalex.org/C2780263894","wikidata":"https://www.wikidata.org/wiki/Q335268","display_name":"Alkyl","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006219","descriptor_name":"Halogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006219","descriptor_name":"Halogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006219","descriptor_name":"Halogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.1c00162","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.1c00162","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:34156848","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34156848","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.8799999952316284}],"awards":[{"id":"https://openalex.org/G1416786047","display_name":null,"funder_award_id":"82030108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1443173459","display_name":null,"funder_award_id":"7202088","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"},{"id":"https://openalex.org/G2337768925","display_name":null,"funder_award_id":"7172118","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"},{"id":"https://openalex.org/G4024115737","display_name":null,"funder_award_id":"21772005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6192172332","display_name":null,"funder_award_id":"2019YFC1708902","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G8867250053","display_name":null,"funder_award_id":"2019ZX09201-005","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W70335093","https://openalex.org/W1965332656","https://openalex.org/W1969996239","https://openalex.org/W1975533327","https://openalex.org/W1989183379","https://openalex.org/W1990451437","https://openalex.org/W1991286793","https://openalex.org/W1992084711","https://openalex.org/W2006607885","https://openalex.org/W2012761773","https://openalex.org/W2018337038","https://openalex.org/W2036274069","https://openalex.org/W2056014566","https://openalex.org/W2060531713","https://openalex.org/W2083226227","https://openalex.org/W2105649494","https://openalex.org/W2111581388","https://openalex.org/W2129682066","https://openalex.org/W2150124540","https://openalex.org/W2153598955","https://openalex.org/W2240856991","https://openalex.org/W2322142573","https://openalex.org/W2520989666","https://openalex.org/W2739691438","https://openalex.org/W2766311895","https://openalex.org/W2767891136","https://openalex.org/W2804583760","https://openalex.org/W2890767151","https://openalex.org/W2984933828","https://openalex.org/W3011366455","https://openalex.org/W3030363843","https://openalex.org/W3048788615","https://openalex.org/W3089574919","https://openalex.org/W3118695441","https://openalex.org/W4211018043","https://openalex.org/W4248107770"],"related_works":["https://openalex.org/W2973074952","https://openalex.org/W4283395020","https://openalex.org/W4320732452","https://openalex.org/W135095951","https://openalex.org/W4286980196","https://openalex.org/W4385588199","https://openalex.org/W3199987505","https://openalex.org/W4385760073","https://openalex.org/W2600435468","https://openalex.org/W2324927567"],"abstract_inverted_index":{"The":[0,136],"comprehensive":[1,13,60],"marine":[2,29,172],"natural":[3,30,100,128],"products":[4,31,101,129],"database":[5,14],"(CMNPD)":[6],"is":[7,142,188],"a":[8,110,189],"new":[9,59],"free":[10],"access":[11],"and":[12,49,74,103,119,124,162,195],"developed":[15],"originally":[16],"by":[17,117],"Lyu's":[18],"team":[19],"of":[20,54,78,89,94,114,138],"our":[21,58],"research":[22],"group,":[23],"including":[24],"more":[25],"than":[26],"30":[27],"000":[28],"(MNPs)":[32],"reported":[33,86,175],"from":[34,91,183],"the":[35,69,87,92,152],"1960s.":[36],"In":[37],"this":[38],"article,":[39],"we":[40,85,168],"aimed":[41],"to":[42,50,67,148,201,205],"present":[43,51],"CMNPD's":[44],"value":[45],"in":[46,140,146,157],"drug":[47,193],"discovery":[48,194],"several":[52,75,82],"characteristics":[53,88],"MNPs":[55,90,97,141,161,202],"based":[56],"on":[57],"data.":[61],"We":[62,105],"used":[63],"chemoinformatic":[64],"analysis":[65],"methods":[66],"report":[68],"molecular":[70],"properties,":[71],"chemical":[72],"space,":[73],"scaffold":[76],"assessments":[77],"CMNPD":[79,108,123,187],"compared":[80],"with":[81,98],"databases.":[83],"Then,":[84],"aspect":[93],"halogens,":[95],"comparing":[96],"terrestrial":[99],"(TNPs)":[102],"drugs.":[104],"found":[106,169],"that":[107,170,186,203],"had":[109],"low":[111],"proportion":[112,137],"(2.91%)":[113],"scaffolds":[115],"utilized":[116],"drugs,":[118,163],"high":[120],"similarities":[121],"between":[122,160],"NPAtlas":[125],"(a":[126],"microbial":[127],"database),":[130],"which":[131],"are":[132],"worth":[133],"further":[134,207],"investigation.":[135],"bromides":[139],"outstandingly":[143],"higher":[144],"(11.0%)":[145],"contrast":[147],"other":[149],"halogens.":[150],"Furthermore,":[151],"results":[153,185],"showed":[154],"great":[155],"differences":[156],"halogenated":[158,177],"structures":[159],"especially":[164],"brominated":[165],"substructures.":[166],"Finally,":[167],"many":[171,197],"species":[173],"(2.52%)":[174],"only":[176],"compounds.":[178],"It":[179],"can":[180],"be":[181,206],"concluded":[182],"these":[184],"promising":[190],"source":[191],"for":[192],"has":[196],"scientific":[198],"issues":[199],"relative":[200],"need":[204],"investigated.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
