{"id":"https://openalex.org/W3024713299","doi":"https://doi.org/10.1021/acs.jcim.0c01306","title":"Improved Protein\u2013Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference","display_name":"Improved Protein\u2013Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference","publication_year":2021,"publication_date":"2021-03-23","ids":{"openalex":"https://openalex.org/W3024713299","doi":"https://doi.org/10.1021/acs.jcim.0c01306","mag":"3024713299","pmid":"https://pubmed.ncbi.nlm.nih.gov/33754707"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c01306","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c01306","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.0c01306","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.0c01306","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020229955","display_name":"Derek Jones","orcid":"https://orcid.org/0000-0002-9510-6662"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]},{"id":"https://openalex.org/I4210138311","display_name":"Lawrence Livermore National Security","ror":"https://ror.org/03z21mf61","country_code":"US","type":"government","lineage":["https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Derek Jones","raw_affiliation_strings":["Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":"https://orcid.org/0000-0002-9510-6662","affiliations":[{"raw_affiliation_string":"Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I4210138311","https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hyojin Kim","orcid":"https://orcid.org/0000-0001-7032-0999"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyojin Kim","raw_affiliation_strings":["Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":"https://orcid.org/0000-0001-7032-0999","affiliations":[{"raw_affiliation_string":"Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100439355","display_name":"Xiaohua Zhang","orcid":"https://orcid.org/0000-0003-0102-6352"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaohua Zhang","raw_affiliation_strings":["Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083445132","display_name":"Adam Zem\u0142a","orcid":"https://orcid.org/0000-0003-0504-8647"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]},{"id":"https://openalex.org/I4210138311","display_name":"Lawrence Livermore National Security","ror":"https://ror.org/03z21mf61","country_code":"US","type":"government","lineage":["https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Zemla","raw_affiliation_strings":["Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I4210138311","https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039222986","display_name":"Garrett A. Stevenson","orcid":"https://orcid.org/0000-0001-7085-8334"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Garrett Stevenson","raw_affiliation_strings":["Computational Engineering Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Engineering Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":null,"display_name":"W. F. Drew Bennett","orcid":"https://orcid.org/0000-0003-3993-9077"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. F. Drew Bennett","raw_affiliation_strings":["Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":"https://orcid.org/0000-0003-3993-9077","affiliations":[{"raw_affiliation_string":"Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088463356","display_name":"Daniel Kirshner","orcid":"https://orcid.org/0000-0002-1293-9969"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Kirshner","raw_affiliation_strings":["Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112914666","display_name":"Sergio Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergio E. Wong","raw_affiliation_strings":["Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020056606","display_name":"Felice C. Lightstone","orcid":"https://orcid.org/0000-0003-1465-426X"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Felice C. Lightstone","raw_affiliation_strings":["Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035849909","display_name":"Jonathan Allen","orcid":"https://orcid.org/0000-0002-4359-8263"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]},{"id":"https://openalex.org/I4210138311","display_name":"Lawrence Livermore National Security","ror":"https://ror.org/03z21mf61","country_code":"US","type":"government","lineage":["https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan E. Allen","raw_affiliation_strings":["Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Global Security Computing Applications Division, Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, United States","institution_ids":["https://openalex.org/I4210138311","https://openalex.org/I1282311441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5020229955"],"corresponding_institution_ids":["https://openalex.org/I1282311441","https://openalex.org/I4210138311"],"apc_list":null,"apc_paid":null,"fwci":1.9785,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.87736542,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"61","issue":"4","first_page":"1583","last_page":"1592"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7557700872421265},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6952808499336243},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6655483245849609},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5889230370521545},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5709131360054016},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48901328444480896},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.47384458780288696},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4626041650772095},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4618017077445984},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.44760578870773315},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1589103639125824}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7557700872421265},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6952808499336243},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6655483245849609},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5889230370521545},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5709131360054016},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48901328444480896},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.47384458780288696},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4626041650772095},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4618017077445984},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.44760578870773315},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1589103639125824},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1021/acs.jcim.0c01306","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c01306","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.0c01306","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:33754707","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33754707","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:arXiv.org:2005.07704","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2005.07704","pdf_url":"https://arxiv.org/pdf/2005.07704","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3024713299","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2005.07704.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:osti.gov:1772269","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1772269","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1841844","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1841844","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"doi:10.48550/arxiv.2005.07704","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2005.07704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.0c01306","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c01306","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.0c01306","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.8899999856948853,"id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G2825169058","display_name":null,"funder_award_id":"TC02274","funder_id":"https://openalex.org/F4320306230","funder_display_name":"American Heart Association"},{"id":"https://openalex.org/G5522089832","display_name":null,"funder_award_id":"DE-AC52-07NA27344","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G8847875004","display_name":null,"funder_award_id":"LLNL-JRNL-804162","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"}],"funders":[{"id":"https://openalex.org/F4320306230","display_name":"American Heart Association","ror":"https://ror.org/013kjyp64"},{"id":"https://openalex.org/F4320338286","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3024713299.pdf","grobid_xml":"https://content.openalex.org/works/W3024713299.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1744759976","https://openalex.org/W1950993160","https://openalex.org/W1984476711","https://openalex.org/W1995541084","https://openalex.org/W2018633278","https://openalex.org/W2027857109","https://openalex.org/W2072683434","https://openalex.org/W2108598243","https://openalex.org/W2110483430","https://openalex.org/W2121621209","https://openalex.org/W2132629607","https://openalex.org/W2134967712","https://openalex.org/W2144528635","https://openalex.org/W2148512505","https://openalex.org/W2169678694","https://openalex.org/W2194775991","https://openalex.org/W2290847742","https://openalex.org/W2402144811","https://openalex.org/W2404280981","https://openalex.org/W2554477349","https://openalex.org/W2583907533","https://openalex.org/W2617750324","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2789074794","https://openalex.org/W2794434752","https://openalex.org/W2885813678","https://openalex.org/W2895884529","https://openalex.org/W2898210859","https://openalex.org/W2902812092","https://openalex.org/W2914076145","https://openalex.org/W2918342466","https://openalex.org/W2964206522","https://openalex.org/W2969083552","https://openalex.org/W2969996838","https://openalex.org/W2970971581","https://openalex.org/W3006243608"],"related_works":["https://openalex.org/W3135935512","https://openalex.org/W3137453535","https://openalex.org/W3037203467","https://openalex.org/W3005043246","https://openalex.org/W3118091546","https://openalex.org/W3092652809","https://openalex.org/W3106162654","https://openalex.org/W3024721185","https://openalex.org/W2643648096","https://openalex.org/W2895884529","https://openalex.org/W2471286324","https://openalex.org/W2003668179","https://openalex.org/W3211045418","https://openalex.org/W3081474937","https://openalex.org/W3012107310","https://openalex.org/W3201778843","https://openalex.org/W3021453944","https://openalex.org/W3156083564","https://openalex.org/W2066150117","https://openalex.org/W3080588469"],"abstract_inverted_index":{"Predicting":[0],"accurate":[1,209],"protein-ligand":[2],"binding":[3,86,163],"affinities":[4],"is":[5,93,157,259],"an":[6],"important":[7],"task":[8],"in":[9,33,68,149,254],"drug":[10],"discovery":[11],"but":[12],"remains":[13,45],"a":[14,100],"challenge":[15],"even":[16],"with":[17,59,225],"computationally":[18],"expensive":[19],"biophysics-based":[20],"energy":[21],"scoring":[22,221],"methods":[23],"and":[24,39,55,79,121,127,192,222,245],"state-of-the-art":[25],"deep":[26,37,183],"learning":[27,184],"approaches.":[28],"Despite":[29],"the":[30,34,48,94,108,139,154,173,204,226,233,239,246,250],"recent":[31],"advances":[32],"application":[35],"of":[36,51,103,110,142,228,249],"convolutional":[38],"graph":[40,117],"neural":[41,113,118,214],"network-based":[42],"approaches,":[43],"it":[44],"unclear":[46],"what":[47],"relative":[49],"advantages":[50],"each":[52,176],"approach":[53],"are":[54,166,269],"how":[56],"they":[57],"compare":[58,107,181],"physics-based":[60],"methodologies":[61],"that":[62,76,98,151,153,203],"have":[63],"found":[64],"more":[65,208],"mainstream":[66],"success":[67],"virtual":[69],"screening":[70],"pipelines.":[71],"We":[72,124],"present":[73],"fusion":[74,205],"models":[75,206,216,252],"combine":[77],"features":[78],"inference":[80],"from":[81],"complementary":[82],"representations":[83],"to":[84,90,105,130,175,186,241],"improve":[85],"affinity":[87],"prediction.":[88],"This,":[89],"our":[91,143,243],"knowledge,":[92],"first":[95],"comprehensive":[96],"study":[97],"uses":[99],"common":[101],"series":[102],"evaluations":[104],"directly":[106],"performance":[109,132,148],"three-dimensional":[111],"(3D)-convolutional":[112],"networks":[114,119],"(3D-CNNs),":[115],"spatial":[116],"(SG-CNNs),":[120],"their":[122,147,212],"fusion.":[123],"use":[125],"temporal":[126],"structure-based":[128],"splits":[129],"assess":[131],"on":[133,189],"novel":[134],"protein":[135],"targets.":[136],"To":[137],"test":[138],"practical":[140],"applicability":[141],"models,":[144],"we":[145,180,237],"examine":[146],"cases":[150],"assume":[152],"crystal":[155],"structure":[156],"not":[158],"available.":[159],"In":[160,178],"these":[161,182],"cases,":[162],"free":[164],"energies":[165],"predicted":[167],"using":[168],"docking":[169,190,220],"pose":[170],"coordinates":[171],"as":[172,217,219,261],"inputs":[174],"model.":[177],"addition,":[179],"approaches":[185],"predictions":[187,210],"based":[188],"scores":[191],"molecular":[193],"mechanic/generalized":[194],"Born":[195],"surface":[196],"area":[197],"(MM/GBSA)":[198],"calculations.":[199],"Our":[200],"results":[201,244],"show":[202],"make":[207],"than":[211,232],"constituent":[213],"network":[215],"well":[218],"MM/GBSA":[223,234],"rescoring,":[224],"benefit":[227],"greater":[229],"computational":[230],"efficiency":[231],"method.":[235],"Finally,":[236],"provide":[238],"code":[240],"reproduce":[242],"parameter":[247,267],"files":[248,268],"trained":[251],"used":[253],"this":[255],"work.":[256],"The":[257],"software":[258],"available":[260,270],"open":[262],"source":[263],"at":[264,271],"https://github.com/llnl/fast.":[265],"Model":[266],"ftp://gdo-bioinformatics.ucllnl.org/fast/pdbbind2016_model_checkpoints/.":[272]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2022-07-26T00:00:00"}
