{"id":"https://openalex.org/W3128253388","doi":"https://doi.org/10.1021/acs.jcim.0c01194","title":"Computational Assessment of Combination Therapy of Androgen Receptor-Targeting Compounds","display_name":"Computational Assessment of Combination Therapy of Androgen Receptor-Targeting Compounds","publication_year":2021,"publication_date":"2021-02-01","ids":{"openalex":"https://openalex.org/W3128253388","doi":"https://doi.org/10.1021/acs.jcim.0c01194","mag":"3128253388","pmid":"https://pubmed.ncbi.nlm.nih.gov/33523669"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c01194","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c01194","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022252584","display_name":"Andr\u00e9 Fischer","orcid":"https://orcid.org/0000-0002-6386-2324"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Fischer","raw_affiliation_strings":["Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-6386-2324","affiliations":[{"raw_affiliation_string":"Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085457993","display_name":"Florian H\u00e4uptli","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Florian H\u00e4uptli","raw_affiliation_strings":["Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041891399","display_name":"Markus A. Lill","orcid":"https://orcid.org/0000-0003-3023-5188"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Markus A. Lill","raw_affiliation_strings":["Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-3023-5188","affiliations":[{"raw_affiliation_string":"Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058642572","display_name":"Martin Smie\u0161ko","orcid":"https://orcid.org/0000-0003-2758-2680"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Martin Smie\u0161ko","raw_affiliation_strings":["Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-2758-2680","affiliations":[{"raw_affiliation_string":"Computational Pharmacy, Department of Pharmaceutical Sciences, University of Basel, Klingelbergstrasse 61, 4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5058642572"],"corresponding_institution_ids":["https://openalex.org/I1850255"],"apc_list":null,"apc_paid":null,"fwci":0.782,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.70895507,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"61","issue":"2","first_page":"1001","last_page":"1009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10543","display_name":"Prostate Cancer Treatment and Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10543","display_name":"Prostate Cancer Treatment and Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11146","display_name":"Hormonal and reproductive studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2712","display_name":"Endocrinology, Diabetes and Metabolism"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antiandrogens","display_name":"Antiandrogens","score":0.8929566144943237},{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.8396598100662231},{"id":"https://openalex.org/keywords/androgen-receptor","display_name":"Androgen receptor","score":0.6240096092224121},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5790140628814697},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.568608820438385},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.522197425365448},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.4727652370929718},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.4322904050350189},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4283723533153534},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.3477175235748291},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29337283968925476},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.2615906000137329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24137970805168152},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.20333898067474365},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18533188104629517},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.17846372723579407}],"concepts":[{"id":"https://openalex.org/C2910016293","wikidata":"https://www.wikidata.org/wiki/Q574820","display_name":"Antiandrogens","level":5,"score":0.8929566144943237},{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.8396598100662231},{"id":"https://openalex.org/C61367390","wikidata":"https://www.wikidata.org/wiki/Q416601","display_name":"Androgen receptor","level":4,"score":0.6240096092224121},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5790140628814697},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.568608820438385},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.522197425365448},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.4727652370929718},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.4322904050350189},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4283723533153534},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.3477175235748291},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29337283968925476},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.2615906000137329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24137970805168152},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.20333898067474365},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18533188104629517},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.17846372723579407}],"mesh":[{"descriptor_ui":"D000726","descriptor_name":"Androgen Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000726","descriptor_name":"Androgen Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000726","descriptor_name":"Androgen Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011944","descriptor_name":"Receptors, Androgen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011944","descriptor_name":"Receptors, Androgen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011944","descriptor_name":"Receptors, Androgen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059002","descriptor_name":"Androgen Receptor Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D059002","descriptor_name":"Androgen Receptor Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D059002","descriptor_name":"Androgen Receptor Antagonists","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.0c01194","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c01194","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:33523669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33523669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8100000023841858,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1507197149","https://openalex.org/W1981652396","https://openalex.org/W1989814214","https://openalex.org/W1993122912","https://openalex.org/W2001245006","https://openalex.org/W2003281617","https://openalex.org/W2014096648","https://openalex.org/W2018556051","https://openalex.org/W2027109368","https://openalex.org/W2031168104","https://openalex.org/W2051783047","https://openalex.org/W2059097089","https://openalex.org/W2093418017","https://openalex.org/W2094221882","https://openalex.org/W2098466396","https://openalex.org/W2106882534","https://openalex.org/W2108243628","https://openalex.org/W2127226545","https://openalex.org/W2130479394","https://openalex.org/W2141920771","https://openalex.org/W2153228625","https://openalex.org/W2164236134","https://openalex.org/W2165854061","https://openalex.org/W2167181696","https://openalex.org/W2182775535","https://openalex.org/W2214621962","https://openalex.org/W2254974869","https://openalex.org/W2287402072","https://openalex.org/W2317863386","https://openalex.org/W2513938452","https://openalex.org/W2600452401","https://openalex.org/W2619817401","https://openalex.org/W2750248174","https://openalex.org/W2767048879","https://openalex.org/W2781722458","https://openalex.org/W2784270660","https://openalex.org/W2803930473","https://openalex.org/W2808560086","https://openalex.org/W2837496780","https://openalex.org/W2898119186","https://openalex.org/W2899070097","https://openalex.org/W2908624740","https://openalex.org/W2917833092","https://openalex.org/W2967884638","https://openalex.org/W2998997658","https://openalex.org/W3011359194","https://openalex.org/W3017202523","https://openalex.org/W4210702584","https://openalex.org/W4248475196"],"related_works":["https://openalex.org/W2130277194","https://openalex.org/W2155957997","https://openalex.org/W1879646718","https://openalex.org/W2002832666","https://openalex.org/W1969896443","https://openalex.org/W2129000610","https://openalex.org/W4317434392","https://openalex.org/W3215749250","https://openalex.org/W3118886469","https://openalex.org/W2116523500"],"abstract_inverted_index":{"The":[0],"ligand-binding":[1],"domain":[2],"of":[3,80,89,134,140,156,167,174],"the":[4,28,40,53,58,138,141,149,157,164,172],"androgen":[5],"receptor":[6],"(AR)":[7],"is":[8],"a":[9,123,131],"target":[10],"for":[11,22,67,126],"drugs":[12],"against":[13],"prostate":[14,175],"cancer":[15],"and":[16,91,119],"offers":[17],"three":[18],"distinct":[19],"binding":[20,31,59,116,120,159],"sites":[21],"small":[23],"molecules.":[24],"Drugs":[25],"acting":[26],"on":[27,115],"orthosteric":[29,90,158],"hormone":[30],"site":[32,143],"suffer":[33],"from":[34],"resistance":[35],"mechanisms":[36],"that":[37],"can,":[38],"in":[39,104,137],"worst":[41],"case,":[42],"reverse":[43],"their":[44,65],"therapeutic":[45],"effect.":[46],"While":[47],"many":[48],"allosteric":[49,92],"ligands":[50],"targeting":[51],"either":[52],"activation":[54],"function-2":[55],"(AF-2)":[56],"or":[57],"function-3":[60],"(BF-3)":[61],"have":[62],"been":[63],"reported,":[64],"potential":[66],"simultaneous":[68],"administration":[69],"with":[70,106],"currently":[71],"prescribed":[72],"antiandrogens":[73,108],"was":[74],"disregarded.":[75],"Here,":[76],"we":[77,129],"report":[78],"results":[79,96],"60":[81],"\u03bcs":[82],"molecular":[83],"dynamics":[84],"simulations":[85],"to":[86,100,111],"investigate":[87],"combinations":[88],"AR":[93,146],"antagonists.":[94,147],"Our":[95],"suggest":[97],"BF-3":[98],"inhibitors":[99,113],"be":[101],"more":[102],"suitable":[103],"combination":[105,166],"classical":[107,145],"as":[109],"opposed":[110],"AF-2":[112,142],"based":[114],"free":[117],"energies":[118],"modes.":[121],"As":[122],"mechanistic":[124],"explanation":[125],"these":[127],"observations,":[128],"deduced":[130],"structural":[132],"adaptation":[133],"helix-12":[135],"involved":[136],"formation":[139],"by":[144,153],"Additionally,":[148],"changes":[150],"were":[151],"accompanied":[152],"an":[154],"expansion":[155],"site.":[160],"Considering":[161],"our":[162],"predictions,":[163],"selective":[165],"AR-targeting":[168],"compounds":[169],"may":[170],"improve":[171],"treatment":[173],"cancer.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
