{"id":"https://openalex.org/W3093729849","doi":"https://doi.org/10.1021/acs.jcim.0c00707","title":"iUmami-SCM: A Novel Sequence-Based Predictor for Prediction and Analysis of Umami Peptides Using a Scoring Card Method with Propensity Scores of Dipeptides","display_name":"iUmami-SCM: A Novel Sequence-Based Predictor for Prediction and Analysis of Umami Peptides Using a Scoring Card Method with Propensity Scores of Dipeptides","publication_year":2020,"publication_date":"2020-10-23","ids":{"openalex":"https://openalex.org/W3093729849","doi":"https://doi.org/10.1021/acs.jcim.0c00707","mag":"3093729849","pmid":"https://pubmed.ncbi.nlm.nih.gov/33094610"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c00707","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00707","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037914988","display_name":"Phasit Charoenkwan","orcid":"https://orcid.org/0000-0002-8161-6856"},"institutions":[{"id":"https://openalex.org/I48076826","display_name":"Chiang Mai University","ror":"https://ror.org/05m2fqn25","country_code":"TH","type":"education","lineage":["https://openalex.org/I48076826"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Phasit Charoenkwan","raw_affiliation_strings":["Modern Management and Information Technology, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modern Management and Information Technology, College of Arts, Media and Technology, Chiang Mai University, Chiang Mai 50200, Thailand","institution_ids":["https://openalex.org/I48076826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089101876","display_name":"Janchai Yana","orcid":null},"institutions":[{"id":"https://openalex.org/I9340882","display_name":"Chiang Mai Rajabhat University","ror":"https://ror.org/02r6k7132","country_code":"TH","type":"education","lineage":["https://openalex.org/I9340882"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Janchai Yana","raw_affiliation_strings":["Department of Chemistry, Faculty of Science and Technology, Chiang Mai Rajabhat University, Chiang Mai 50300, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Faculty of Science and Technology, Chiang Mai Rajabhat University, Chiang Mai 50300, Thailand","institution_ids":["https://openalex.org/I9340882"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043577834","display_name":"Chanin Nantasenamat","orcid":"https://orcid.org/0000-0003-1040-663X"},"institutions":[{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Chanin Nantasenamat","raw_affiliation_strings":["Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":"https://orcid.org/0000-0003-1040-663X","affiliations":[{"raw_affiliation_string":"Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061480012","display_name":"Md Mehedi Hasan","orcid":"https://orcid.org/0000-0003-4952-0739"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Md. Mehedi Hasan","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820-8502, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084444175","display_name":"Watshara Shoombuatong","orcid":"https://orcid.org/0000-0002-3394-8709"},"institutions":[{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":true,"raw_author_name":"Watshara Shoombuatong","raw_affiliation_strings":["Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":"https://orcid.org/0000-0002-3394-8709","affiliations":[{"raw_affiliation_string":"Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I25399158"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5084444175"],"corresponding_institution_ids":["https://openalex.org/I25399158"],"apc_list":null,"apc_paid":null,"fwci":8.8026,"has_fulltext":false,"cited_by_count":185,"citation_normalized_percentile":{"value":0.98710889,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"60","issue":"12","first_page":"6666","last_page":"6678"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11584","display_name":"Biochemical Analysis and Sensing Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11584","display_name":"Biochemical Analysis and Sensing Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/umami","display_name":"Umami","score":0.9918771982192993},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6098470687866211},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5304866433143616},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5045164823532104},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5012989044189453},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47895461320877075},{"id":"https://openalex.org/keywords/dipeptide","display_name":"Dipeptide","score":0.4415286183357239},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.36536866426467896},{"id":"https://openalex.org/keywords/taste","display_name":"Taste","score":0.35370612144470215},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3285929560661316},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22068378329277039},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14766952395439148}],"concepts":[{"id":"https://openalex.org/C2776946002","wikidata":"https://www.wikidata.org/wiki/Q202637","display_name":"Umami","level":3,"score":0.9918771982192993},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6098470687866211},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5304866433143616},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5045164823532104},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5012989044189453},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47895461320877075},{"id":"https://openalex.org/C2779138802","wikidata":"https://www.wikidata.org/wiki/Q418602","display_name":"Dipeptide","level":3,"score":0.4415286183357239},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.36536866426467896},{"id":"https://openalex.org/C8868529","wikidata":"https://www.wikidata.org/wiki/Q124794","display_name":"Taste","level":2,"score":0.35370612144470215},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3285929560661316},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22068378329277039},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14766952395439148},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004151","descriptor_name":"Dipeptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004151","descriptor_name":"Dipeptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004151","descriptor_name":"Dipeptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013649","descriptor_name":"Taste","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013649","descriptor_name":"Taste","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013649","descriptor_name":"Taste","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057216","descriptor_name":"Propensity Score","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057216","descriptor_name":"Propensity Score","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057216","descriptor_name":"Propensity Score","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.0c00707","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00707","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:33094610","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33094610","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1042274662","display_name":null,"funder_award_id":"RSA6280075","funder_id":"https://openalex.org/F4320322614","funder_display_name":"Thailand Research Fund"},{"id":"https://openalex.org/G503923855","display_name":null,"funder_award_id":"MRG6180226","funder_id":"https://openalex.org/F4320322614","funder_display_name":"Thailand Research Fund"},{"id":"https://openalex.org/G5340995787","display_name":null,"funder_award_id":"MRG6180222","funder_id":"https://openalex.org/F4320322614","funder_display_name":"Thailand Research Fund"}],"funders":[{"id":"https://openalex.org/F4320321529","display_name":"Chiang Mai University","ror":"https://ror.org/05m2fqn25"},{"id":"https://openalex.org/F4320322614","display_name":"Thailand Research Fund","ror":"https://ror.org/03gd1bh37"},{"id":"https://openalex.org/F4320333332","display_name":"Office of the Higher Education Commission","ror":"https://ror.org/05m5t2b63"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W8607940","https://openalex.org/W114346019","https://openalex.org/W1889312334","https://openalex.org/W1925392124","https://openalex.org/W1975443343","https://openalex.org/W1980110585","https://openalex.org/W1990066673","https://openalex.org/W1994843250","https://openalex.org/W2016264360","https://openalex.org/W2023043966","https://openalex.org/W2024835592","https://openalex.org/W2025357559","https://openalex.org/W2029478857","https://openalex.org/W2034365741","https://openalex.org/W2042167868","https://openalex.org/W2043789485","https://openalex.org/W2062849515","https://openalex.org/W2068322437","https://openalex.org/W2073777322","https://openalex.org/W2079075796","https://openalex.org/W2080138514","https://openalex.org/W2083347967","https://openalex.org/W2101234009","https://openalex.org/W2109553965","https://openalex.org/W2136513242","https://openalex.org/W2147200261","https://openalex.org/W2193540265","https://openalex.org/W2465717638","https://openalex.org/W2512514802","https://openalex.org/W2516812563","https://openalex.org/W2553258701","https://openalex.org/W2563843253","https://openalex.org/W2586057086","https://openalex.org/W2589065420","https://openalex.org/W2607595092","https://openalex.org/W2619289668","https://openalex.org/W2747758005","https://openalex.org/W2756470092","https://openalex.org/W2792246829","https://openalex.org/W2793069248","https://openalex.org/W2793687864","https://openalex.org/W2794956775","https://openalex.org/W2806146459","https://openalex.org/W2807896518","https://openalex.org/W2883969623","https://openalex.org/W2884557428","https://openalex.org/W2887293266","https://openalex.org/W2892079508","https://openalex.org/W2901754076","https://openalex.org/W2902319566","https://openalex.org/W2905629607","https://openalex.org/W2919199934","https://openalex.org/W2936599975","https://openalex.org/W2938050946","https://openalex.org/W2942801317","https://openalex.org/W2944021362","https://openalex.org/W2944959957","https://openalex.org/W2944966230","https://openalex.org/W2945375732","https://openalex.org/W2947589481","https://openalex.org/W2949453554","https://openalex.org/W2953352511","https://openalex.org/W2953561684","https://openalex.org/W2981572887","https://openalex.org/W2987660980","https://openalex.org/W2987724682","https://openalex.org/W2989775272","https://openalex.org/W3003285614","https://openalex.org/W3009548091","https://openalex.org/W3009776949","https://openalex.org/W3013954280","https://openalex.org/W3015957975","https://openalex.org/W3020081556","https://openalex.org/W3035978132","https://openalex.org/W4213345021","https://openalex.org/W4235448132"],"related_works":["https://openalex.org/W2990791507","https://openalex.org/W2504172226","https://openalex.org/W3122144785","https://openalex.org/W1520955230","https://openalex.org/W2374044650","https://openalex.org/W3047780025","https://openalex.org/W1979731698","https://openalex.org/W3210218061","https://openalex.org/W2986018130","https://openalex.org/W2072074612"],"abstract_inverted_index":{"Umami":[0],"or":[1],"the":[2,10,25,35,56,80,91,110,142,160,194,230],"taste":[3,13,27],"of":[4,9,24,60,66,95,113,149,162,178,183,186,232],"monosodium":[5],"glutamate":[6],"represents":[7],"one":[8],"major":[11],"attractive":[12],"modalities":[14],"in":[15,107],"humans.":[16],"Therefore,":[17],"knowledge":[18,177],"about":[19],"biophysical":[20,179],"and":[21,34,49,58,93,116,145,151,176,180],"biochemical":[22,181],"properties":[23,182],"umami":[26,42,61,96,127,184,223,233],"is":[28,197,204],"important":[29],"for":[30,40,55,90,125,221],"both":[31],"scientific":[32],"research":[33],"food":[36],"industry.":[37],"Experimental":[38],"approaches":[39],"predicting":[41,126],"peptides":[43,62,128],"are":[44],"labor":[45],"intensive,":[46],"time":[47],"consuming,":[48],"expensive.":[50],"To":[51,188],"date,":[52],"computational":[53,219],"models":[54],"prediction":[57,122],"analysis":[59,161],"as":[63,129,131,169,199,212,216,226,228],"a":[64,100,172,190,200,217],"function":[65],"sequence":[67,88],"information":[68,89],"have":[69,78],"not":[70],"been":[71],"developed":[72,102],"yet.":[73],"In":[74],"this":[75],"study,":[76],"we":[77],"proposed":[79],"first":[81],"sequence-based":[82],"predictor":[83,119],"named":[84],"iUmami-SCM":[85,98,140],"using":[86],"primary":[87],"identification":[92,225],"characterization":[94],"peptides.":[97,187,234],"utilized":[99],"newly":[101],"scoring":[103],"card":[104],"method":[105],"(SCM)":[106],"conjunction":[108],"with":[109],"propensity":[111,164],"scores":[112,165],"amino":[114],"acids":[115],"dipeptide.":[117],"Our":[118],"demonstrated":[120],"excellent":[121],"performance":[123],"ability":[124],"well":[130,227],"outperforming":[132],"other":[133],"commonly":[134],"used":[135],"machine":[136],"learning":[137],"classifiers.":[138],"Particularly,":[139],"afforded":[141],"highest":[143],"accuracy":[144],"Matthews":[146],"correlation":[147],"coefficient":[148],"0.865":[150],"0.679,":[152],"respectively,":[153],"on":[154],"an":[155],"independent":[156],"data":[157],"set.":[158],"Furthermore,":[159],"SCM-derived":[163],"was":[166],"performed":[167],"so":[168],"to":[170],"provide":[171],"more":[173],"in-depth":[174],"understanding":[175],"intensities":[185],"develop":[189],"convenient":[191],"bioinformatics":[192],"tool,":[193],"best":[195],"model":[196],"deployed":[198],"web":[201],"server":[202],"that":[203],"made":[205],"publicly":[206],"available":[207],"at":[208],"http://camt.pythonanywhere.com/iUmami-SCM.":[209],"The":[210],"iUmami-SCM,":[211],"presented":[213],"herein,":[214],"serves":[215],"powerful":[218],"technique":[220],"large-scale":[222],"peptide":[224],"facilitating":[229],"interpretation":[231]},"counts_by_year":[{"year":2026,"cited_by_count":22},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
