{"id":"https://openalex.org/W3126031592","doi":"https://doi.org/10.1021/acs.jcim.0c00598","title":"Property-Unmatched Decoys in Docking Benchmarks","display_name":"Property-Unmatched Decoys in Docking Benchmarks","publication_year":2021,"publication_date":"2021-01-25","ids":{"openalex":"https://openalex.org/W3126031592","doi":"https://doi.org/10.1021/acs.jcim.0c00598","mag":"3126031592","pmid":"https://pubmed.ncbi.nlm.nih.gov/33494610"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c00598","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00598","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7913603","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024441850","display_name":"Reed M. Stein","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reed M. Stein","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101784955","display_name":"Yang Ying","orcid":"https://orcid.org/0000-0002-0112-3016"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Yang","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041554247","display_name":"Trent E. Balius","orcid":"https://orcid.org/0000-0002-6811-4667"},"institutions":[{"id":"https://openalex.org/I114662689","display_name":"Leidos (United States)","ror":"https://ror.org/012cvds63","country_code":"US","type":"company","lineage":["https://openalex.org/I114662689"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4396570585","display_name":"Leidos Biomedical Research Inc. (United States)","ror":"https://ror.org/00bardy64","country_code":null,"type":"company","lineage":["https://openalex.org/I114662689","https://openalex.org/I4396570585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trent E. Balius","raw_affiliation_strings":["Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., P.O. Box B, Frederick, Maryland 21702, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., P.O. Box B, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I114662689","https://openalex.org/I4210130649","https://openalex.org/I4396570585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109487965","display_name":"Matt J. O\u2019Meara","orcid":null},"institutions":[{"id":"https://openalex.org/I199037182","display_name":"Washtenaw Community College","ror":"https://ror.org/03k77wm53","country_code":"US","type":"education","lineage":["https://openalex.org/I199037182"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matt J. O\u2019Meara","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Palmer Commons, 100 Washtenaw Ave. #2017, Ann Arbor, Michigan 48109, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Palmer Commons, 100 Washtenaw Ave. #2017, Ann Arbor, Michigan 48109, United States","institution_ids":["https://openalex.org/I199037182","https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005823028","display_name":"Jiankun Lyu","orcid":"https://orcid.org/0000-0002-0461-5454"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiankun Lyu","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101491506","display_name":"Jennifer J. Young","orcid":"https://orcid.org/0000-0002-3265-9112"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Young","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090904857","display_name":"Khanh Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khanh Tang","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009419179","display_name":"Brian K. Shoichet","orcid":"https://orcid.org/0000-0002-6098-7367"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian K. Shoichet","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":"https://orcid.org/0000-0002-6098-7367","affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054045417","display_name":"John J. Irwin","orcid":"https://orcid.org/0000-0002-1195-6417"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John J. Irwin","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, United States","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5009419179","https://openalex.org/A5054045417"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":null,"apc_paid":null,"fwci":12.1748,"has_fulltext":false,"cited_by_count":137,"citation_normalized_percentile":{"value":0.9888061,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"61","issue":"2","first_page":"699","last_page":"714"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.9486678838729858},{"id":"https://openalex.org/keywords/maxima-and-minima","display_name":"Maxima and minima","score":0.6825710535049438},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6590801477432251},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6498368978500366},{"id":"https://openalex.org/keywords/goldilocks-principle","display_name":"Goldilocks principle","score":0.42858392000198364},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3372753858566284},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33171796798706055},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19860896468162537},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15122193098068237},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09202688932418823}],"concepts":[{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.9486678838729858},{"id":"https://openalex.org/C186633575","wikidata":"https://www.wikidata.org/wiki/Q845060","display_name":"Maxima and minima","level":2,"score":0.6825710535049438},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6590801477432251},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6498368978500366},{"id":"https://openalex.org/C177321328","wikidata":"https://www.wikidata.org/wiki/Q13580479","display_name":"Goldilocks principle","level":2,"score":0.42858392000198364},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3372753858566284},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33171796798706055},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19860896468162537},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15122193098068237},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09202688932418823},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C87355193","wikidata":"https://www.wikidata.org/wiki/Q411","display_name":"Astrobiology","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.0c00598","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00598","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:33494610","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33494610","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt7r785814","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/7r785814","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, vol 61, iss 2","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7913603","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7913603","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7913603","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7913603","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.699999988079071,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G7214210738","display_name":null,"funder_award_id":"GM071896","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8836501443","display_name":null,"funder_award_id":"R35GM122481","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":100,"referenced_works":["https://openalex.org/W565471074","https://openalex.org/W1535631466","https://openalex.org/W1596324297","https://openalex.org/W1605578858","https://openalex.org/W1757990252","https://openalex.org/W1964958542","https://openalex.org/W1968319881","https://openalex.org/W1975293246","https://openalex.org/W1975570414","https://openalex.org/W1975875968","https://openalex.org/W1978009405","https://openalex.org/W1979597166","https://openalex.org/W1980285986","https://openalex.org/W1982996392","https://openalex.org/W1985588649","https://openalex.org/W1988744515","https://openalex.org/W1994067196","https://openalex.org/W1998503326","https://openalex.org/W2000350990","https://openalex.org/W2002368219","https://openalex.org/W2002610019","https://openalex.org/W2014123957","https://openalex.org/W2015907087","https://openalex.org/W2018989832","https://openalex.org/W2025006523","https://openalex.org/W2027640169","https://openalex.org/W2028609644","https://openalex.org/W2029087609","https://openalex.org/W2038772855","https://openalex.org/W2040496005","https://openalex.org/W2040823078","https://openalex.org/W2043509228","https://openalex.org/W2047189301","https://openalex.org/W2051060071","https://openalex.org/W2054338762","https://openalex.org/W2058820833","https://openalex.org/W2058835307","https://openalex.org/W2059457452","https://openalex.org/W2060531713","https://openalex.org/W2067455153","https://openalex.org/W2077627456","https://openalex.org/W2078374001","https://openalex.org/W2079331631","https://openalex.org/W2083339697","https://openalex.org/W2084266282","https://openalex.org/W2088388996","https://openalex.org/W2089879448","https://openalex.org/W2090631504","https://openalex.org/W2094208194","https://openalex.org/W2107506448","https://openalex.org/W2112101018","https://openalex.org/W2113846323","https://openalex.org/W2114411231","https://openalex.org/W2114779636","https://openalex.org/W2115339329","https://openalex.org/W2117897510","https://openalex.org/W2124074156","https://openalex.org/W2125957493","https://openalex.org/W2127760066","https://openalex.org/W2131562748","https://openalex.org/W2138199172","https://openalex.org/W2142182637","https://openalex.org/W2142210548","https://openalex.org/W2171234651","https://openalex.org/W2171242938","https://openalex.org/W2199426173","https://openalex.org/W2208175234","https://openalex.org/W2274656763","https://openalex.org/W2294728472","https://openalex.org/W2323252543","https://openalex.org/W2334725871","https://openalex.org/W2336411773","https://openalex.org/W2340614189","https://openalex.org/W2509519298","https://openalex.org/W2512819857","https://openalex.org/W2536259549","https://openalex.org/W2566202547","https://openalex.org/W2595605857","https://openalex.org/W2741729445","https://openalex.org/W2748633757","https://openalex.org/W2766694609","https://openalex.org/W2774371249","https://openalex.org/W2789866723","https://openalex.org/W2793989982","https://openalex.org/W2803094965","https://openalex.org/W2912171584","https://openalex.org/W2949923262","https://openalex.org/W2969325194","https://openalex.org/W2980538488","https://openalex.org/W2996552898","https://openalex.org/W3001433048","https://openalex.org/W3003690309","https://openalex.org/W3004731690","https://openalex.org/W3009044824","https://openalex.org/W3010016408","https://openalex.org/W3015273333","https://openalex.org/W3020257619","https://openalex.org/W3041168066","https://openalex.org/W3043660595","https://openalex.org/W3104508774"],"related_works":["https://openalex.org/W2075370846","https://openalex.org/W3092476706","https://openalex.org/W2051523251","https://openalex.org/W4256501598","https://openalex.org/W4247168545","https://openalex.org/W2124981562","https://openalex.org/W2187341605","https://openalex.org/W3005094479","https://openalex.org/W1973364873","https://openalex.org/W1963920545"],"abstract_inverted_index":{"Enrichment":[0],"of":[1,20,47,76,106,120],"ligands":[2,90],"versus":[3],"property-matched":[4,40,92],"decoys":[5,59,70,93],"is":[6,124],"widely":[7],"used":[8],"to":[9,26,49,79,84],"test":[10],"and":[11,91,115,139,153,162],"optimize":[12],"docking":[13],"library":[14,56,78,122],"screens.":[15],"However,":[16],"the":[17,44,73,77,107,121,130],"unconstrained":[18],"optimization":[19],"enrichment":[21,38,137,148],"alone":[22],"can":[23,33,134,142],"mislead,":[24],"leading":[25],"false":[27],"confidence":[28,145],"in":[29,52,99,136,146],"prospective":[30,101],"performance.":[31],"This":[32],"arise":[34],"by":[35,89],"over-optimizing":[36,65],"for":[37,66],"against":[39],"decoys,":[41],"without":[42],"considering":[43],"full":[45],"spectrum":[46],"molecules":[48,86],"be":[50,80],"found":[51],"a":[53,100],"true":[54],"large":[55],"screen.":[57,102],"Adding":[58,69],"representing":[60,117],"charge":[61],"extrema":[62],"helps":[63],"mitigate":[64],"electrostatic":[67],"interactions.":[68],"that":[71,95,132,141],"represent":[72],"overall":[74],"characteristics":[75],"docked":[81],"allows":[82],"one":[83,96,133],"sample":[85],"not":[87],"represented":[88],"but":[94],"will":[97],"encounter":[98,135],"An":[103],"optimized":[104],"version":[105],"DUD-E":[108],"set":[109],"(DUDE-Z),":[110],"as":[111,113],"well":[112],"Extrema":[114],"sets":[116,156],"broad":[118],"features":[119],"(Goldilocks),":[123],"developed":[125],"here.":[126],"We":[127],"also":[128],"explore":[129],"variability":[131],"calculations":[138],"how":[140],"temper":[143],"one's":[144],"small":[147],"differences.":[149],"The":[150],"new":[151,154],"tools":[152],"decoy":[155],"are":[157],"freely":[158],"available":[159],"at":[160],"http://tldr.docking.org":[161],"http://dudez.docking.org.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":39},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
