{"id":"https://openalex.org/W3076540051","doi":"https://doi.org/10.1021/acs.jcim.0c00206","title":"BRIDGE: An Open Platform for Reproducible High-Throughput Free Energy Simulations","display_name":"BRIDGE: An Open Platform for Reproducible High-Throughput Free Energy Simulations","publication_year":2020,"publication_date":"2020-08-18","ids":{"openalex":"https://openalex.org/W3076540051","doi":"https://doi.org/10.1021/acs.jcim.0c00206","mag":"3076540051","pmid":"https://pubmed.ncbi.nlm.nih.gov/32810405"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c00206","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00206","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://eprints.soton.ac.uk/444424/1/Main_ApplNote_BRIDGE_FE_JCIM_2020R3TC.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023668095","display_name":"Tharindu Senapathi","orcid":"https://orcid.org/0000-0002-3277-4022"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Tharindu Senapathi","raw_affiliation_strings":["Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa"],"raw_orcid":"https://orcid.org/0000-0002-3277-4022","affiliations":[{"raw_affiliation_string":"Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045487219","display_name":"Miroslav Suruzhon","orcid":"https://orcid.org/0000-0002-6794-1679"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Miroslav Suruzhon","raw_affiliation_strings":["School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087764384","display_name":"Christopher B. Barnett","orcid":"https://orcid.org/0000-0002-1467-5741"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Christopher B. Barnett","raw_affiliation_strings":["Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa"],"raw_orcid":"https://orcid.org/0000-0002-1467-5741","affiliations":[{"raw_affiliation_string":"Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067820273","display_name":"Jonathan W. Essex","orcid":"https://orcid.org/0000-0003-2639-2746"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Essex","raw_affiliation_strings":["School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-2639-2746","affiliations":[{"raw_affiliation_string":"School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006872896","display_name":"Kevin J. Naidoo","orcid":"https://orcid.org/0000-0002-9898-3708"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"Kevin J. Naidoo","raw_affiliation_strings":["Institute of Infectious Disease and Molecular Medicine, Faculty of Health Science, University of Cape Town, Rondebosch 7701, South Africa","Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa"],"raw_orcid":"https://orcid.org/0000-0002-9898-3708","affiliations":[{"raw_affiliation_string":"Institute of Infectious Disease and Molecular Medicine, Faculty of Health Science, University of Cape Town, Rondebosch 7701, South Africa","institution_ids":["https://openalex.org/I157614274"]},{"raw_affiliation_string":"Scientific Computing Research Unit and Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa","institution_ids":["https://openalex.org/I157614274"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006872896"],"corresponding_institution_ids":["https://openalex.org/I157614274"],"apc_list":null,"apc_paid":null,"fwci":0.9688,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73653285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"60","issue":"11","first_page":"5290","last_page":"5295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7717196941375732},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5887364745140076},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.5800605416297913},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5563421249389648},{"id":"https://openalex.org/keywords/porting","display_name":"Porting","score":0.4794310927391052},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4671439826488495},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4589056372642517},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.45298510789871216},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3858981728553772},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.38155436515808105},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.32860708236694336},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3257739543914795}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7717196941375732},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5887364745140076},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.5800605416297913},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5563421249389648},{"id":"https://openalex.org/C106251023","wikidata":"https://www.wikidata.org/wiki/Q851989","display_name":"Porting","level":3,"score":0.4794310927391052},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4671439826488495},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4589056372642517},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.45298510789871216},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3858981728553772},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.38155436515808105},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.32860708236694336},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3257739543914795}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.0c00206","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00206","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32810405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32810405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:eprints.soton.ac.uk:444424","is_oa":true,"landing_page_url":"https://eprints.soton.ac.uk/444424/1/Main_ApplNote_BRIDGE_FE_JCIM_2020R3TC.pdf","pdf_url":"https://eprints.soton.ac.uk/444424/1/Main_ApplNote_BRIDGE_FE_JCIM_2020R3TC.pdf","source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:eprints.soton.ac.uk:444424","is_oa":true,"landing_page_url":"https://eprints.soton.ac.uk/444424/1/Main_ApplNote_BRIDGE_FE_JCIM_2020R3TC.pdf","pdf_url":"https://eprints.soton.ac.uk/444424/1/Main_ApplNote_BRIDGE_FE_JCIM_2020R3TC.pdf","source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.8299999833106995}],"awards":[{"id":"https://openalex.org/G105296940","display_name":"CCP-BioSim: Biomolecular simulation at the life sciences interface","funder_award_id":"EP/J010189/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G1198808071","display_name":"EPSRC Centre for Doctoral Training in Theory and Modelling in Chemical Sciences.","funder_award_id":"EP/L015722/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2082328766","display_name":null,"funder_award_id":"449130","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G5477962936","display_name":null,"funder_award_id":"EP/L015722","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8008707186","display_name":null,"funder_award_id":"EP/J010189/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"},{"id":"https://openalex.org/F4320307773","display_name":"GlaxoSmithKline","ror":"https://ror.org/01xsqw823"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320672","display_name":"South African Medical Research Council","ror":"https://ror.org/05q60vz69"},{"id":"https://openalex.org/F4320320691","display_name":"Department of Science and Technology, Republic of South Africa","ror":"https://ror.org/048kh7197"},{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320324164","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79"},{"id":"https://openalex.org/F4320326627","display_name":"Syngenta International","ror":null},{"id":"https://openalex.org/F4320334105","display_name":"Center for High Performance Computing","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3076540051.pdf","grobid_xml":"https://content.openalex.org/works/W3076540051.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1969488773","https://openalex.org/W1989195611","https://openalex.org/W2004124673","https://openalex.org/W2021832765","https://openalex.org/W2033906450","https://openalex.org/W2034194940","https://openalex.org/W2043383571","https://openalex.org/W2055648985","https://openalex.org/W2063206968","https://openalex.org/W2114227821","https://openalex.org/W2132262459","https://openalex.org/W2132925790","https://openalex.org/W2136482257","https://openalex.org/W2144305967","https://openalex.org/W2147993766","https://openalex.org/W2149170824","https://openalex.org/W2151020862","https://openalex.org/W2154670681","https://openalex.org/W2321484219","https://openalex.org/W2404280981","https://openalex.org/W2508846984","https://openalex.org/W2914266147","https://openalex.org/W2914963377","https://openalex.org/W2917207851","https://openalex.org/W2949223833","https://openalex.org/W2949467224","https://openalex.org/W2950265636","https://openalex.org/W2990010612","https://openalex.org/W3008264752","https://openalex.org/W6893605886"],"related_works":["https://openalex.org/W1820309981","https://openalex.org/W3124707092","https://openalex.org/W2375332572","https://openalex.org/W28826848","https://openalex.org/W3123383020","https://openalex.org/W4312942606","https://openalex.org/W2166776054","https://openalex.org/W2912579397","https://openalex.org/W2152694830","https://openalex.org/W2373446736"],"abstract_inverted_index":{"Biomolecular":[0],"Reaction":[1],"and":[2,55,58,75,99,125,161,176,185,192,206,222,236,256],"Interaction":[3],"Dynamics":[4],"Global":[5],"Environment":[6],"(BRIDGE)":[7],"is":[8,33],"an":[9,19,201],"open-source":[10],"web":[11,50,157],"platform":[12,65],"developed":[13],"with":[14],"the":[15,22,36,62,72,141,172,212,223,263],"aim":[16],"to":[17,27,92,220,229,261],"provide":[18],"environment":[20],"for":[21,52,66,80,216],"design":[23],"of":[24,77,130,189,195,204,214,254,267],"reliable":[25],"methods":[26,79,116,205,258],"conduct":[28],"reproducible":[29],"biomolecular":[30],"simulations.":[31,82],"It":[32],"built":[34],"on":[35,48,154,241],"well-known":[37],"Galaxy":[38],"bioinformatics":[39],"platform.":[40,145],"Through":[41],"this,":[42],"BRIDGE":[43,198],"hosts":[44],"computational":[45,78],"chemistry":[46],"tools":[47,89],"public":[49,190],"servers":[51,158],"internet":[53],"use":[54,108],"provides":[56],"machine-":[57],"operating-system-independent":[59],"portability":[60],"using":[61,171],"Docker":[63,143],"container":[64,144],"local":[67],"use.":[68],"This":[69,210],"construction":[70],"improves":[71],"accessibility,":[73],"shareability,":[74],"reproducibility":[76],"molecular":[81],"Here":[83],"we":[84,163],"present":[85,111],"integrated":[86],"free":[87,96,102,112,265],"energy":[88,113],"(or":[90],"apps)":[91],"calculate":[93],"absolute":[94],"binding":[95,101,264],"energies":[97,103,266],"(ABFEs)":[98],"relative":[100],"(RBFEs),":[104],"as":[105,123],"illustrated":[106],"through":[107,181],"cases.":[109],"We":[110,238],"perturbation":[114],"(FEP)":[115],"contained":[117],"in":[118,140],"various":[119],"software":[120,133],"packages":[121],"such":[122],"GROMACS":[124],"YANK":[126],"that":[127,165,226],"are":[128,227,259],"independent":[129,193],"hardware":[131],"configuration,":[132],"libraries,":[134],"or":[135],"operating":[136],"systems":[137],"when":[138],"ported":[139],"Galaxy-BRIDGE":[142],"By":[146],"performing":[147],"cyclin-dependent":[148],"kinase":[149],"2":[150],"(CDK2)":[151],"FEP":[152],"calculations":[153],"geographically":[155],"dispersed":[156],"(in":[159],"Africa":[160],"Europe),":[162],"illustrate":[164,239],"large-scale":[166],"computations":[167],"can":[168],"be":[169],"performed":[170],"exact":[173],"same":[174],"codes":[175],"methodology":[177],"by":[178,234],"collaborating":[179],"groups":[180],"publicly":[182],"shared":[183],"protocols":[184],"workflows.":[186],"The":[187],"ease":[188],"sharing":[191],"reproduction":[194],"simulations":[196],"via":[197],"makes":[199,211],"possible":[200],"open":[202],"review":[203],"complete":[207],"simulation":[208],"protocols.":[209],"discovery":[213],"inhibitors":[215],"drug":[217,249],"targets":[218],"accessible":[219],"nonexperts":[221],"computer":[224],"experiments":[225],"used":[228,260],"arrive":[230],"at":[231],"leads":[232],"verifiable":[233],"experts":[235],"reviewers.":[237],"this":[240],"\u03b2-galactoside":[242],"\u03b1-2,3-sialyltransferase":[243],"I":[244],"(ST3Gal-I),":[245],"a":[246,252],"breast":[247],"cancer":[248],"target,":[250],"where":[251],"combination":[253],"RBFE":[255],"ABFE":[257],"compute":[262],"three":[268],"inhibitors.":[269]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
