{"id":"https://openalex.org/W3041168066","doi":"https://doi.org/10.1021/acs.jcim.0c00122","title":"DUBS: A Framework for Developing <u>D</u> irectory of <u>U</u> seful <u>B</u> enchmarking <u>S</u> ets for Virtual Screening","display_name":"DUBS: A Framework for Developing <u>D</u> irectory of <u>U</u> seful <u>B</u> enchmarking <u>S</u> ets for Virtual Screening","publication_year":2020,"publication_date":"2020-07-08","ids":{"openalex":"https://openalex.org/W3041168066","doi":"https://doi.org/10.1021/acs.jcim.0c00122","mag":"3041168066","pmid":"https://pubmed.ncbi.nlm.nih.gov/32639154"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.0c00122","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00122","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://infoscience.epfl.ch/handle/20.500.14299/172745","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005464954","display_name":"Jonathan Fine","orcid":"https://orcid.org/0000-0002-3685-8581"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Jonathan Fine","raw_affiliation_strings":["Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States","institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210118524"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050328230","display_name":"Matthew Muhoberac","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Matthew Muhoberac","raw_affiliation_strings":["Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States","institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210118524"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015199441","display_name":"Guillaume Fraux","orcid":"https://orcid.org/0000-0003-4824-6512"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Guillaume Fraux","raw_affiliation_strings":["\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Route Cantonale, 1015 Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-4824-6512","affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Route Cantonale, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066358077","display_name":"Gaurav Chopra","orcid":"https://orcid.org/0000-0003-0942-7898"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Gaurav Chopra","raw_affiliation_strings":["Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States","Purdue Institute for Drug Discovery, Integrative Data Science Institute, Purdue Center for Cancer Research, Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue Institute for Integrative Neuroscience, West Lafayette, Indiana 47907, United States"],"raw_orcid":"https://orcid.org/0000-0003-0942-7898","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States","institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210118524"]},{"raw_affiliation_string":"Purdue Institute for Drug Discovery, Integrative Data Science Institute, Purdue Center for Cancer Research, Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue Institute for Integrative Neuroscience, West Lafayette, Indiana 47907, United States","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066358077"],"corresponding_institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210118524"],"apc_list":null,"apc_paid":null,"fwci":0.289,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62556926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"60","issue":"9","first_page":"4137","last_page":"4143"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.9416905045509338},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.725700855255127},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7159979343414307},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6351501941680908},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.5647647976875305},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.5025844573974609},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46078693866729736},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4496206045150757},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43114861845970154},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3781251311302185},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3376333713531494},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16265079379081726},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14841297268867493},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14101669192314148}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.9416905045509338},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.725700855255127},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7159979343414307},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6351501941680908},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.5647647976875305},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.5025844573974609},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46078693866729736},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4496206045150757},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43114861845970154},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3781251311302185},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3376333713531494},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16265079379081726},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14841297268867493},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14101669192314148},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.0c00122","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.0c00122","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32639154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32639154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:infoscience.epfl.ch:281106","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/172745","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12034430","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12034430","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:281106","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/172745","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1679780777","display_name":null,"funder_award_id":"UL1TR002529","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8130582225","display_name":null,"funder_award_id":"P30 CA023168","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320309520","display_name":"Ralph W. and Grace M. Showalter Research Trust Fund","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320309667","display_name":"Purdue Research Foundation","ror":"https://ror.org/007n03h88"},{"id":"https://openalex.org/F4320314245","display_name":"Purdue University Center for Cancer Research","ror":null},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1925334442","https://openalex.org/W1968319881","https://openalex.org/W1969017960","https://openalex.org/W1983194490","https://openalex.org/W1988111902","https://openalex.org/W1996840082","https://openalex.org/W2013085020","https://openalex.org/W2028609644","https://openalex.org/W2031390939","https://openalex.org/W2044444984","https://openalex.org/W2067732724","https://openalex.org/W2078959398","https://openalex.org/W2088388996","https://openalex.org/W2127760066","https://openalex.org/W2129556489","https://openalex.org/W2134967712","https://openalex.org/W2136567909","https://openalex.org/W2142919646","https://openalex.org/W2155201844","https://openalex.org/W2157122545","https://openalex.org/W2169678694","https://openalex.org/W2195839185","https://openalex.org/W2294728472","https://openalex.org/W2337273834","https://openalex.org/W2346710580","https://openalex.org/W2400913246","https://openalex.org/W2417432242","https://openalex.org/W2527541313","https://openalex.org/W2587598315","https://openalex.org/W2774738748","https://openalex.org/W2902812092","https://openalex.org/W2910318997","https://openalex.org/W2922251278","https://openalex.org/W2944973540","https://openalex.org/W2949226104","https://openalex.org/W2950192635","https://openalex.org/W3007329471"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W4362464865","https://openalex.org/W2098840560","https://openalex.org/W4302604134","https://openalex.org/W2768880727","https://openalex.org/W2621548818","https://openalex.org/W2113146994","https://openalex.org/W2073081213"],"abstract_inverted_index":{"Benchmarking":[0,52],"is":[1,22,189],"a":[2,23,26,57,73,142,150,170,176],"crucial":[3],"step":[4],"in":[5,183],"evaluating":[6],"virtual":[7,40,102,184],"screening":[8,41,103],"methods":[9],"for":[10,29,101,179],"drug":[11],"discovery.":[12],"One":[13],"major":[14],"issue":[15],"that":[16,166],"arises":[17],"among":[18],"benchmarking":[19,65,118,180],"data":[20,83,91,119,181],"sets":[21,66,120,182],"lack":[24],"of":[25,50],"standardized":[27,177],"format":[28,78,108],"representing":[30],"the":[31,39,48,68,81,93,123,128],"protein":[32,69,94],"and":[33,59,89,96,121],"ligand":[34],"structures":[35],"used":[36,99,109],"to":[37,62,86,92,114,140,159,174],"benchmark":[38,143],"method.":[42],"To":[43],"address":[44],"this,":[45],"we":[46],"introduce":[47],"Directory":[49],"Useful":[51],"Sets":[53],"(DUBS)":[54],"framework,":[55],"as":[56],"simple":[58,74,106,151],"flexible":[60],"tool":[61],"rapidly":[63],"create":[64,141,160],"using":[67,144],"databank.":[70],"DUBS":[71,111,135,148,167,187],"uses":[72,149],"input":[75,107],"text":[76],"based":[77],"along":[79],"with":[80],"Lemon":[82],"mining":[84],"framework":[85],"efficiently":[87],"access":[88,122],"organize":[90],"databank":[95],"output":[97],"commonly":[98],"inputs":[100],"software.":[104],"The":[105,186],"by":[110],"allows":[112],"users":[113,154],"define":[115],"their":[116],"own":[117],"corresponding":[124],"information":[125],"directly":[126],"from":[127],"software":[129],"package.":[130],"Currently,":[131],"it":[132],"only":[133],"takes":[134],"less":[136],"than":[137],"2":[138],"min":[139],"this":[145,158],"format.":[146],"Since":[147],"python":[152],"script,":[153],"can":[155],"easily":[156],"modify":[157],"more":[161],"complex":[162],"benchmarks.":[163],"We":[164],"hope":[165],"will":[168],"be":[169],"useful":[171],"community":[172],"resource":[173],"provide":[175],"representation":[178],"screening.":[185],"package":[188],"available":[190],"on":[191],"GitHub":[192],"at":[193],"https://github.com/chopralab/lemon/tree/master/dubs.":[194]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-20T23:13:51.555489","created_date":"2020-07-16T00:00:00"}
