{"id":"https://openalex.org/W2091251097","doi":"https://doi.org/10.1017/s1471068411000287","title":"Automatic network reconstruction using ASP","display_name":"Automatic network reconstruction using ASP","publication_year":2011,"publication_date":"2011-07-01","ids":{"openalex":"https://openalex.org/W2091251097","doi":"https://doi.org/10.1017/s1471068411000287","mag":"2091251097"},"language":"en","primary_location":{"id":"doi:10.1017/s1471068411000287","is_oa":true,"landing_page_url":"https://doi.org/10.1017/s1471068411000287","pdf_url":"https://www.cambridge.org/core/services/aop-cambridge-core/content/view/D9AB3B4D4DF5780E22B3F622F573E876/S1471068411000287a.pdf/div-class-title-automatic-network-reconstruction-using-asp-div.pdf","source":{"id":"https://openalex.org/S59670734","display_name":"Theory and Practice of Logic Programming","issn_l":"1471-0684","issn":["1471-0684","1475-3081"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory and Practice of Logic Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.cambridge.org/core/services/aop-cambridge-core/content/view/D9AB3B4D4DF5780E22B3F622F573E876/S1471068411000287a.pdf/div-class-title-automatic-network-reconstruction-using-asp-div.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083371944","display_name":"Markus Durzinsky","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"MARKUS DURZINSKY","raw_affiliation_strings":["Magdeburg Centre for Systems Biology, Universit\u00e4t Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magdeburg Centre for Systems Biology, Universit\u00e4t Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002359152","display_name":"Wolfgang Marwan","orcid":"https://orcid.org/0000-0002-6311-5433"},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"WOLFGANG MARWAN","raw_affiliation_strings":["Magdeburg Centre for Systems Biology, Universit\u00e4t Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magdeburg Centre for Systems Biology, Universit\u00e4t Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071465645","display_name":"Max Ostrowski","orcid":null},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"MAX OSTROWSKI","raw_affiliation_strings":["Universit\u00e4t Potsdam, Germany","Universit\u00e4t Potsdam GERMANY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Potsdam, Germany","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Universit\u00e4t Potsdam GERMANY","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058467603","display_name":"Torsten Schaub","orcid":"https://orcid.org/0000-0002-7456-041X"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"TORSTEN SCHAUB","raw_affiliation_strings":["Universit\u00e4t Potsdam, Germany","Universit\u00e4t Potsdam GERMANY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Potsdam, Germany","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Universit\u00e4t Potsdam GERMANY","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048135620","display_name":"Annegret K. Wagler","orcid":"https://orcid.org/0000-0002-6055-1176"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"ANNEGRET WAGLER","raw_affiliation_strings":["Universit\u00e9 Blaise Pascal, Clermont-Ferrand, France","Universit\u00e9 Blaise Pascal Clermont Ferrand France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Blaise Pascal, Clermont-Ferrand, France","institution_ids":["https://openalex.org/I198244214"]},{"raw_affiliation_string":"Universit\u00e9 Blaise Pascal Clermont Ferrand France","institution_ids":["https://openalex.org/I198244214"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.1765,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.95418868,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"4-5","first_page":"749","last_page":"766"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11727","display_name":"Advanced Algebra and Logic","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8400415182113647},{"id":"https://openalex.org/keywords/answer-set-programming","display_name":"Answer set programming","score":0.7584162950515747},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6821562051773071},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.612820029258728},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5622830390930176},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5454937815666199},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5326672792434692},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.42383480072021484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39991098642349243},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3797150254249573},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3699759542942047},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3167468309402466},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.08502432703971863}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8400415182113647},{"id":"https://openalex.org/C182620335","wikidata":"https://www.wikidata.org/wiki/Q2852531","display_name":"Answer set programming","level":3,"score":0.7584162950515747},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6821562051773071},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.612820029258728},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5622830390930176},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5454937815666199},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5326672792434692},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.42383480072021484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39991098642349243},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3797150254249573},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3699759542942047},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3167468309402466},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.08502432703971863},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1017/s1471068411000287","is_oa":true,"landing_page_url":"https://doi.org/10.1017/s1471068411000287","pdf_url":"https://www.cambridge.org/core/services/aop-cambridge-core/content/view/D9AB3B4D4DF5780E22B3F622F573E876/S1471068411000287a.pdf/div-class-title-automatic-network-reconstruction-using-asp-div.pdf","source":{"id":"https://openalex.org/S59670734","display_name":"Theory and Practice of Logic Programming","issn_l":"1471-0684","issn":["1471-0684","1475-3081"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory and Practice of Logic Programming","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.228.1384","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.228.1384","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.uni-potsdam.de/wv/pdfformat/dumaosscwa11a.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.651.9775","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.651.9775","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.uni-potsdam.de/bioasp/nr/paper.pdf","raw_type":"text"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:36760","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/36760","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:41241","is_oa":false,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:kobv:517-opus4-412419","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"postprint"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/42978","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/42978","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"doi:10.25932/publishup-41241","is_oa":true,"landing_page_url":"https://doi.org/10.25932/publishup-41241","pdf_url":null,"source":{"id":"https://openalex.org/S7407053006","display_name":"Universit\u00e4t Potsdam","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1017/s1471068411000287","is_oa":true,"landing_page_url":"https://doi.org/10.1017/s1471068411000287","pdf_url":"https://www.cambridge.org/core/services/aop-cambridge-core/content/view/D9AB3B4D4DF5780E22B3F622F573E876/S1471068411000287a.pdf/div-class-title-automatic-network-reconstruction-using-asp-div.pdf","source":{"id":"https://openalex.org/S59670734","display_name":"Theory and Practice of Logic Programming","issn_l":"1471-0684","issn":["1471-0684","1475-3081"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory and Practice of Logic Programming","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2091251097.pdf","grobid_xml":"https://content.openalex.org/works/W2091251097.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W134248041","https://openalex.org/W1481919380","https://openalex.org/W1482498688","https://openalex.org/W1502956986","https://openalex.org/W1520085989","https://openalex.org/W1544757461","https://openalex.org/W1551934730","https://openalex.org/W1574084679","https://openalex.org/W1587191403","https://openalex.org/W1606891084","https://openalex.org/W2000875416","https://openalex.org/W2004414305","https://openalex.org/W2011124182","https://openalex.org/W2026482829","https://openalex.org/W2061280979","https://openalex.org/W2063447902","https://openalex.org/W2069650148","https://openalex.org/W2079829409","https://openalex.org/W2093312553","https://openalex.org/W2100603120","https://openalex.org/W2103616991","https://openalex.org/W2110804558","https://openalex.org/W2116137060","https://openalex.org/W2116925421","https://openalex.org/W2147730579","https://openalex.org/W2156841851","https://openalex.org/W2166106382","https://openalex.org/W2967044339","https://openalex.org/W6628887588","https://openalex.org/W6634213903"],"related_works":["https://openalex.org/W2092211394","https://openalex.org/W2140698704","https://openalex.org/W2891226953","https://openalex.org/W2601354222","https://openalex.org/W1903938722","https://openalex.org/W4386211115","https://openalex.org/W4385821813","https://openalex.org/W2218202131","https://openalex.org/W3008962280","https://openalex.org/W1630259549"],"abstract_inverted_index":{"Abstract":[0],"Building":[1],"biological":[2,159,176],"models":[3,133],"by":[4,85,106],"inferring":[5],"functional":[6],"dependencies":[7],"from":[8,22],"experimental":[9],"data":[10],"is":[11,76,118,153,163],"an":[12,98,170,193],"important":[13],"issue":[14],"in":[15,64,72],"Molecular":[16],"Biology.":[17],"To":[18],"relieve":[19],"the":[20,34,65,68,83,109,147,183],"biologist":[21],"this":[23],"traditionally":[24],"manual":[25],"process,":[26],"various":[27],"approaches":[28,40],"have":[29],"been":[30],"proposed":[31,105],"to":[32,59,77,82,87,101,124],"increase":[33],"degree":[35],"of":[36,67,108,131,137,141,175,186],"automation.":[37],"However,":[38],"available":[39],"often":[41],"yield":[42],"a":[43,79,129,135],"single":[44],"model":[45],"only,":[46],"rely":[47],"on":[48],"specific":[49],"assumptions,":[50],"and/or":[51],"use":[52],"dedicated,":[53],"heuristic":[54,149],"algorithms":[55],"that":[56],"are":[57],"intolerant":[58],"changing":[60],"circumstances":[61],"or":[62],"requirements":[63],"view":[66],"rapid":[69],"progress":[70],"made":[71],"Biotechnology.":[73],"Our":[74],"aim":[75],"provide":[78],"declarative":[80,154],"solution":[81],"problem":[84],"appeal":[86],"Answer":[88],"Set":[89],"Programming":[90],"(ASP)":[91],"overcoming":[92],"these":[93],"difficulties.":[94],"We":[95],"build":[96],"upon":[97],"existing":[99,148],"approach":[100,112,191],"Automatic":[102],"Network":[103],"Reconstruction":[104],"part":[107],"authors.":[110],"This":[111],"has":[113,143],"firm":[114],"mathematical":[115],"foundations":[116],"and":[117,155,166,173],"well":[119],"suited":[120],"for":[121,158,169,181],"ASP":[122,142],"due":[123],"its":[125],"combinatorial":[126],"flavor":[127],"providing":[128],"characterization":[130],"all":[132],"explaining":[134],"set":[136],"experiments.":[138],"The":[139],"usage":[140],"several":[144],"benefits":[145],"over":[146],"algorithms.":[150],"First,":[151],"it":[152,162,179],"thus":[156,167],"transparent":[157],"experts.":[160],"Second,":[161],"elaboration":[164],"tolerant":[165],"allows":[168,180],"easy":[171],"exploration":[172],"incorporation":[174],"constraints.":[177],"Third,":[178],"exploring":[182],"entire":[184],"space":[185],"possible":[187],"models.":[188],"Finally,":[189],"our":[190],"offers":[192],"excellent":[194],"performance,":[195],"matching":[196],"existing,":[197],"special-purpose":[198],"systems.":[199]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
