{"id":"https://openalex.org/W1964680470","doi":"https://doi.org/10.1017/s1471068410000554","title":"Detecting inconsistencies in large biological networks with answer set programming","display_name":"Detecting inconsistencies in large biological networks with answer set programming","publication_year":2011,"publication_date":"2011-01-27","ids":{"openalex":"https://openalex.org/W1964680470","doi":"https://doi.org/10.1017/s1471068410000554","mag":"1964680470"},"language":"en","primary_location":{"id":"doi:10.1017/s1471068410000554","is_oa":false,"landing_page_url":"https://doi.org/10.1017/s1471068410000554","pdf_url":null,"source":{"id":"https://openalex.org/S59670734","display_name":"Theory and Practice of Logic Programming","issn_l":"1471-0684","issn":["1471-0684","1475-3081"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory and Practice of Logic Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006066772","display_name":"Martin Gebser","orcid":"https://orcid.org/0000-0002-8010-4752"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"MARTIN GEBSER","raw_affiliation_strings":["Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058467603","display_name":"Torsten Schaub","orcid":"https://orcid.org/0000-0002-7456-041X"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"TORSTEN SCHAUB","raw_affiliation_strings":["Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012126355","display_name":"Sven Thiele","orcid":"https://orcid.org/0000-0002-5812-6963"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"SVEN THIELE","raw_affiliation_strings":["Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#"],"affiliations":[{"raw_affiliation_string":"Institute for Informatics, University of Potsdam, Potsdam, Germany (e-mail:","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Institute for informatics, university of potsdam, potsdam, germany (e-mail: gebser@cs.uni-potsdam.de, torsten@cs.uni-potsdam.de, sthiele@cs.uni-potsdam.de)#TAB#","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070748025","display_name":"Philippe Veber","orcid":"https://orcid.org/0000-0002-0204-1266"},"institutions":[{"id":"https://openalex.org/I4210141964","display_name":"Institut Cochin","ror":"https://ror.org/051sk4035","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210096427","https://openalex.org/I4210141964"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"PHILIPPE VEBER","raw_affiliation_strings":["Institut Cochin, Paris, France (e-mail:","Institut cochin, paris, france (e-mail: philippe.veber@googlemail.com)#TAB#"],"affiliations":[{"raw_affiliation_string":"Institut Cochin, Paris, France (e-mail:","institution_ids":["https://openalex.org/I4210141964"]},{"raw_affiliation_string":"Institut cochin, paris, france (e-mail: philippe.veber@googlemail.com)#TAB#","institution_ids":["https://openalex.org/I4210141964"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006066772"],"corresponding_institution_ids":["https://openalex.org/I176453806"],"apc_list":null,"apc_paid":null,"fwci":15.8203,"has_fulltext":false,"cited_by_count":86,"citation_normalized_percentile":{"value":0.99077017,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"11","issue":"2-3","first_page":"323","last_page":"360"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10906","display_name":"AI-based Problem Solving and Planning","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8817377686500549},{"id":"https://openalex.org/keywords/answer-set-programming","display_name":"Answer set programming","score":0.8238867521286011},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.7737316489219666},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.7219923138618469},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.5833027958869934},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4537532329559326},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4466102123260498},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4413912892341614},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4349970519542694},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4240560531616211},{"id":"https://openalex.org/keywords/eventual-consistency","display_name":"Eventual consistency","score":0.42263680696487427},{"id":"https://openalex.org/keywords/data-consistency","display_name":"Data consistency","score":0.4204517900943756},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3047066330909729},{"id":"https://openalex.org/keywords/consistency-model","display_name":"Consistency model","score":0.26191475987434387},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2558143138885498},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.1363203525543213},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.09469854831695557}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8817377686500549},{"id":"https://openalex.org/C182620335","wikidata":"https://www.wikidata.org/wiki/Q2852531","display_name":"Answer set programming","level":3,"score":0.8238867521286011},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.7737316489219666},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.7219923138618469},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.5833027958869934},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4537532329559326},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4466102123260498},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4413912892341614},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4349970519542694},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4240560531616211},{"id":"https://openalex.org/C34422012","wikidata":"https://www.wikidata.org/wiki/Q6125872","display_name":"Eventual consistency","level":4,"score":0.42263680696487427},{"id":"https://openalex.org/C93361087","wikidata":"https://www.wikidata.org/wiki/Q4426698","display_name":"Data consistency","level":2,"score":0.4204517900943756},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3047066330909729},{"id":"https://openalex.org/C37279795","wikidata":"https://www.wikidata.org/wiki/Q2492305","display_name":"Consistency model","level":3,"score":0.26191475987434387},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2558143138885498},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.1363203525543213},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.09469854831695557},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1017/s1471068410000554","is_oa":false,"landing_page_url":"https://doi.org/10.1017/s1471068410000554","pdf_url":null,"source":{"id":"https://openalex.org/S59670734","display_name":"Theory and Practice of Logic Programming","issn_l":"1471-0684","issn":["1471-0684","1475-3081"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Theory and Practice of Logic Programming","raw_type":"journal-article"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:36986","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/36986","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W204808196","https://openalex.org/W1482498688","https://openalex.org/W1513230022","https://openalex.org/W1520085989","https://openalex.org/W1544757461","https://openalex.org/W1552168992","https://openalex.org/W1584297074","https://openalex.org/W1587191403","https://openalex.org/W1587265115","https://openalex.org/W1601977376","https://openalex.org/W1606891084","https://openalex.org/W1613481848","https://openalex.org/W1630321466","https://openalex.org/W1639901403","https://openalex.org/W1721757222","https://openalex.org/W1925387111","https://openalex.org/W1976055110","https://openalex.org/W1978984420","https://openalex.org/W1991356071","https://openalex.org/W1992480370","https://openalex.org/W2011039300","https://openalex.org/W2011124182","https://openalex.org/W2018885902","https://openalex.org/W2023141722","https://openalex.org/W2029415078","https://openalex.org/W2033538120","https://openalex.org/W2033925647","https://openalex.org/W2056850725","https://openalex.org/W2062983176","https://openalex.org/W2069898971","https://openalex.org/W2087432892","https://openalex.org/W2088999712","https://openalex.org/W2089052780","https://openalex.org/W2094397891","https://openalex.org/W2100699693","https://openalex.org/W2104130992","https://openalex.org/W2105753008","https://openalex.org/W2130987249","https://openalex.org/W2134487266","https://openalex.org/W2144885342","https://openalex.org/W2152131859","https://openalex.org/W2171619830","https://openalex.org/W2592767170","https://openalex.org/W2611370172","https://openalex.org/W2967044339","https://openalex.org/W3103786587","https://openalex.org/W4233442745","https://openalex.org/W4301860484","https://openalex.org/W4312512934"],"related_works":["https://openalex.org/W2769374332","https://openalex.org/W2157257000","https://openalex.org/W2343489657","https://openalex.org/W2308026613","https://openalex.org/W169944433","https://openalex.org/W2358334493","https://openalex.org/W2916847028","https://openalex.org/W1645067580","https://openalex.org/W2971748376","https://openalex.org/W2993126026"],"abstract_inverted_index":{"Abstract":[0],"We":[1,38],"introduce":[2],"an":[3,41],"approach":[4,42],"to":[5,48,61,78,83],"detecting":[6],"inconsistencies":[7,65],"in":[8],"large":[9],"biological":[10],"networks":[11],"by":[12,66],"using":[13],"answer":[14,45],"set":[15,46],"programming.":[16],"To":[17],"this":[18,59,74],"end,":[19],"we":[20,57],"build":[21],"upon":[22],"a":[23],"recently":[24],"proposed":[25],"notion":[26],"of":[27,35,52,70],"consistency":[28,51],"between":[29],"biochemical/genetic":[30],"reactions":[31],"and":[32],"high-throughput":[33],"profiles":[34],"cell":[36],"activity.":[37],"then":[39],"present":[40],"based":[43],"on":[44],"programming":[47],"check":[49],"the":[50],"large-scale":[53],"data":[54,81],"sets.":[55],"Moreover,":[56],"extend":[58],"methodology":[60],"provide":[62],"explanations":[63],"for":[64],"determining":[67],"minimal":[68],"representations":[69],"conflicts.":[71],"In":[72],"practice,":[73],"can":[75],"be":[76],"used":[77],"identify":[79],"unreliable":[80],"or":[82],"indicate":[84],"missing":[85],"reactions.":[86]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":11}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
