{"id":"https://openalex.org/W3012022167","doi":"https://doi.org/10.1017/s0269888920000132","title":"Matching biodiversity and ecology ontologies: challenges and evaluation results","display_name":"Matching biodiversity and ecology ontologies: challenges and evaluation results","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3012022167","doi":"https://doi.org/10.1017/s0269888920000132","mag":"3012022167"},"language":"en","primary_location":{"id":"doi:10.1017/s0269888920000132","is_oa":false,"landing_page_url":"https://doi.org/10.1017/s0269888920000132","pdf_url":null,"source":{"id":"https://openalex.org/S137506714","display_name":"The Knowledge Engineering Review","issn_l":"0269-8889","issn":["0269-8889","1469-8005"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Knowledge Engineering Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://publica.fraunhofer.de/documents/N-586418.html","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047005693","display_name":"Naouel Karam","orcid":"https://orcid.org/0000-0002-6762-6417"},"institutions":[{"id":"https://openalex.org/I2800804238","display_name":"Fraunhofer Institute for Open Communication Systems","ror":"https://ror.org/00px80p03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2800804238","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Naouel Karam","raw_affiliation_strings":["Fraunhofer FOKUS, Berlin, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"Fraunhofer FOKUS, Berlin, Germany e-mail:","institution_ids":["https://openalex.org/I2800804238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069001751","display_name":"Abderrahmane Khiat","orcid":"https://orcid.org/0000-0002-7708-7971"},"institutions":[{"id":"https://openalex.org/I4210144576","display_name":"Fraunhofer Institute for Intelligent Analysis and Information Systems","ror":"https://ror.org/04nc32781","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210144576","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Abderrahmane Khiat","raw_affiliation_strings":["Fraunhofer IAIS, Sankt Augustin, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS, Sankt Augustin, Germany e-mail:","institution_ids":["https://openalex.org/I4210144576"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046373717","display_name":"Alsayed Algergawy","orcid":"https://orcid.org/0000-0002-8550-4720"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alsayed Algergawy","raw_affiliation_strings":["Friedrich-Schiller University of Jena, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"Friedrich-Schiller University of Jena, Germany e-mail:","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012254977","display_name":"Melanie Sattler","orcid":"https://orcid.org/0000-0001-9543-0326"},"institutions":[{"id":"https://openalex.org/I180437899","display_name":"University of Bremen","ror":"https://ror.org/04ers2y35","country_code":"DE","type":"education","lineage":["https://openalex.org/I180437899"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Melanie Sattler","raw_affiliation_strings":["MARUM, University of Bremen, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"MARUM, University of Bremen, Germany e-mail:","institution_ids":["https://openalex.org/I180437899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060220259","display_name":"Claus Weiland","orcid":"https://orcid.org/0000-0003-0351-6523"},"institutions":[{"id":"https://openalex.org/I4210112860","display_name":"Senckenberg Biodiversity and Climate Research Centre","ror":"https://ror.org/01amp2a31","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2802697327","https://openalex.org/I315704651","https://openalex.org/I4210112860"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Claus Weiland","raw_affiliation_strings":["Senckenberg Biodiversity and Climate Research Center, Frankfurt, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"Senckenberg Biodiversity and Climate Research Center, Frankfurt, Germany e-mail:","institution_ids":["https://openalex.org/I4210112860"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080395777","display_name":"Marco Schmidt","orcid":"https://orcid.org/0000-0001-6087-6117"},"institutions":[{"id":"https://openalex.org/I4210112860","display_name":"Senckenberg Biodiversity and Climate Research Centre","ror":"https://ror.org/01amp2a31","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2802697327","https://openalex.org/I315704651","https://openalex.org/I4210112860"]},{"id":"https://openalex.org/I4210126671","display_name":"Kliniken der Stadt K\u00f6ln","ror":"https://ror.org/03hxbk195","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210126671"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Schmidt","raw_affiliation_strings":["Palmengarten der Stadt Frankfurt, Germany e-mail:","Senckenberg Biodiversity and Climate Research Center, Frankfurt, Germany e-mail:"],"affiliations":[{"raw_affiliation_string":"Palmengarten der Stadt Frankfurt, Germany e-mail:","institution_ids":["https://openalex.org/I4210126671"]},{"raw_affiliation_string":"Senckenberg Biodiversity and Climate Research Center, Frankfurt, Germany e-mail:","institution_ids":["https://openalex.org/I4210112860"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5047005693"],"corresponding_institution_ids":["https://openalex.org/I2800804238"],"apc_list":null,"apc_paid":null,"fwci":0.9114,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.72363101,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.9175000190734863,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7879404425621033},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.6856206655502319},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.6253179311752319},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6209979057312012},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5950497984886169},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5648016333580017},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.49355804920196533},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46315398812294006},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.3943897783756256},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.380869597196579},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.33717477321624756},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.26342839002609253},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14589935541152954},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0938519537448883},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07106733322143555}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7879404425621033},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.6856206655502319},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.6253179311752319},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6209979057312012},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5950497984886169},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5648016333580017},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.49355804920196533},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46315398812294006},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.3943897783756256},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.380869597196579},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.33717477321624756},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.26342839002609253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14589935541152954},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0938519537448883},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07106733322143555},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1017/s0269888920000132","is_oa":false,"landing_page_url":"https://doi.org/10.1017/s0269888920000132","pdf_url":null,"source":{"id":"https://openalex.org/S137506714","display_name":"The Knowledge Engineering Review","issn_l":"0269-8889","issn":["0269-8889","1469-8005"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311721","host_organization_name":"Cambridge University Press","host_organization_lineage":["https://openalex.org/P4310311721","https://openalex.org/P4310311702"],"host_organization_lineage_names":["Cambridge University Press","University of Cambridge"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Knowledge Engineering Review","raw_type":"journal-article"},{"id":"pmh:oai:fraunhofer.de:N-586418","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-586418.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer FOKUS","raw_type":"article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/262130","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/262130","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"pmh:oai:fraunhofer.de:N-586418","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-586418.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer FOKUS","raw_type":"article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W91108659","https://openalex.org/W102861580","https://openalex.org/W110418550","https://openalex.org/W160306911","https://openalex.org/W173475825","https://openalex.org/W1506328535","https://openalex.org/W1523356682","https://openalex.org/W1547224514","https://openalex.org/W1993451156","https://openalex.org/W2003012803","https://openalex.org/W2003023097","https://openalex.org/W2013093146","https://openalex.org/W2015423051","https://openalex.org/W2058353863","https://openalex.org/W2066412242","https://openalex.org/W2067819940","https://openalex.org/W2097877306","https://openalex.org/W2116034137","https://openalex.org/W2118100588","https://openalex.org/W2119733112","https://openalex.org/W2124045889","https://openalex.org/W2124991490","https://openalex.org/W2129687578","https://openalex.org/W2139315672","https://openalex.org/W2143666974","https://openalex.org/W2148084209","https://openalex.org/W2148111377","https://openalex.org/W2151690004","https://openalex.org/W2153579005","https://openalex.org/W2156543375","https://openalex.org/W2159583324","https://openalex.org/W2261812172","https://openalex.org/W2302501749","https://openalex.org/W2398857618","https://openalex.org/W2400033706","https://openalex.org/W2406808301","https://openalex.org/W2467782726","https://openalex.org/W2479500447","https://openalex.org/W2507211235","https://openalex.org/W2521644033","https://openalex.org/W2524477088","https://openalex.org/W2531093471","https://openalex.org/W2546755630","https://openalex.org/W2550086694","https://openalex.org/W2585806604","https://openalex.org/W2738615202","https://openalex.org/W2756624211","https://openalex.org/W2756690326","https://openalex.org/W2759011721","https://openalex.org/W2768307970","https://openalex.org/W2769436351","https://openalex.org/W2774466664","https://openalex.org/W2898973103","https://openalex.org/W2899586782","https://openalex.org/W2915145848","https://openalex.org/W2949756071","https://openalex.org/W2952606960","https://openalex.org/W2962969117","https://openalex.org/W3037755596","https://openalex.org/W3157198147","https://openalex.org/W4241410814","https://openalex.org/W4294170691","https://openalex.org/W6632822377","https://openalex.org/W6642735192","https://openalex.org/W6681873994","https://openalex.org/W6682452302","https://openalex.org/W6682691769","https://openalex.org/W6697391645","https://openalex.org/W6727034900","https://openalex.org/W6729232281","https://openalex.org/W6733026769","https://openalex.org/W6739384892","https://openalex.org/W6756233532"],"related_works":["https://openalex.org/W274732444","https://openalex.org/W2396811154","https://openalex.org/W2223008607","https://openalex.org/W4206428734","https://openalex.org/W4248726527","https://openalex.org/W2386232412","https://openalex.org/W2793451634","https://openalex.org/W2363188691","https://openalex.org/W152870918","https://openalex.org/W149627178"],"abstract_inverted_index":{"Abstract":[0],"Biodiversity":[1],"research":[2],"studies":[3],"the":[4,20,66,111,124,155,162,188],"variability":[5,11],"and":[6,13,25,41,49,71,97,121,133,179],"diversity":[7,22],"of":[8,23,69,82,154],"organisms,":[9],"including":[10],"within":[12],"between":[14,60,95],"species":[15],"with":[16,35,187],"particular":[17],"focus":[18],"on":[19,123,181],"functional":[21],"traits":[24],"their":[26,61],"relationship":[27],"to":[28,84,139,184],"environment.":[29],"Managing":[30],"biodiversity":[31,132],"data":[32],"implies":[33],"dealing":[34],"its":[36],"heterogeneous":[37],"nature":[38],"using":[39],"semantics":[40],"tailored":[42],"ontologies.":[43,73],"These":[44],"are":[45,100],"themselves":[46],"differently":[47],"conceived,":[48],"combining":[50],"them":[51],"in":[52,87,161,176],"semantically":[53],"enabled":[54],"applications":[55],"necessitates":[56],"an":[57],"effective":[58],"alignment":[59],"concepts.":[62],"This":[63],"paper":[64],"describes":[65],"ontology":[67,85,145],"matching":[68,86,156,164],"biodiversity-":[70],"ecology-related":[72],"We":[74,102,172],"illustrate":[75],"diverse":[76],"challenges":[77],"introduced":[78],"by":[79,127],"this":[80,118],"kind":[81],"ontologies":[83,99],"general.":[88],"Real":[89],"use":[90,135],"cases":[91],"requiring":[92],"pairwise":[93],"alignments":[94],"environment":[96],"trait":[98],"introduced.":[101],"describe":[103],"our":[104,182],"experience":[105],"creating":[106],"a":[107,141],"new":[108,148],"track":[109],"at":[110],"Ontology":[112],"Alignment":[113],"Evaluation":[114],"Initiative":[115],"designed":[116],"for":[117,144,170],"specific":[119],"domain":[120],"report":[122],"results":[125],"obtained":[126],"state-of-the-art":[128],"participating":[129],"systems.":[130],"The":[131],"ecology":[134],"case":[136],"turns":[137],"out":[138],"be":[140],"strong":[142],"one":[143],"matching,":[146],"introducing":[147],"interesting":[149],"challenges.":[150],"Even":[151],"if":[152],"most":[153],"systems":[157],"perform":[158],"relatively":[159],"well":[160],"proposed":[163],"tasks,":[165],"there":[166],"is":[167],"still":[168],"room":[169],"improvement.":[171],"highlight":[173],"possible":[174],"directions":[175],"that":[177],"matter":[178],"elaborate":[180],"plan":[183],"further":[185],"progress":[186],"track.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-01-08T20:05:33.558190","created_date":"2025-10-10T00:00:00"}